BAC Information

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BAC

Clone NameB6Ng01-332P09
Chromosome1 (Build37)
Map Location 17,387,356 - 17,388,537
singlet/doubletsinglet
Overlap geneRbm6-ps1
Upstream geneUbe2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1, Gdap1, LOC383495
Downstream genePpia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332P09.bB6Ng01-332P09.g
ACCGA118912GA118913
length1,1651,195
definitionB6Ng01-332P09.b B6Ng01-332P09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttatttttctcacattgcaaaaaaagtttatttaaaaaagttct
agcagcaagaacagtaacaaaacaaatggagaaaaggacaaataaaacaa
agaggaaattgtgtcctgtggggtgtctccactcttaatcgagttcttta
tatcgagcaaacatgactcttcgaatgatgtctcggtatgtctcattaga
ctgtctcttgctggttcttcctggggcaccaccaccaggtcccctcatct
gcccttcaatctcctctgatgaacccaatccaggatggctatatcccagg
cctgcccctttcctccagccagtggcctgctgggcacagcctcctttgct
actagtgtcattgtcttctttatcaacagggtttcgatcactgtctgttt
ctctggagtatttaatccgtttcctttctggagaatcaaaagattgtagt
ttttcccttcggtcatttcctttttctttaaaccttcccgcctgctctct
cctctccagacaggcgagctcttgctctgactgttttatcttccggtgaa
tttccaggttttgcttgtgcatatttgacagttgttggtatttggtaaga
acttctttttgggaaactgccttctgcagagcagacaagccagtttattc
cagtcagtgagtttgtcgtcttcattctctttcttggtcatctcctggag
aggctgtggctgtgaacaggaggggcctgttcctcttcttcctcttcctc
atagtcactgtctcctccatattcacccaggagaccaatcaatggattta
ccaccttaggtggaggaggactctcttcctttttcacagtaggaggtaga
ggcttcttaaaaacatcttctaggggagacttcccctcactggtactttc
ttgaaactttgtcattcctctgtctttttttctccttgccatctctttta
gatgtttcttcttgctatttgactttccttgactggtagatttcttttcc
ttgatttcttctcatcagtgactcaggtcctaggcacatagatttctgct
gggtgtggatcatagtagtctgcaagggtcatatagtagcagtgcagatc
aaaatattgtagcagtcaagtgatgactgtgccctggtcgaattggtatc
tgagaccagctgaat
gaattcaatgtcaatgaatcaacaaactctgtattttctctgagaaacag
tgacttagtggtcactaactcagtacgcactgatattttagagcatgcca
ttcacaaccaacttcactctagaaggagaatccagtcaatggctgtgtaa
aagtaaagaagaaataaatcctaatcttctcatcccaaatatagggtagg
ttttcatagggaaatatgagttttaaaaagtcagggacgtgacaaaatgt
tgtgggattccaggataaattacagaaattgataaaactggcattgacaa
tggtcatactcaactactgtttctcagggaatgatctccacacccaactg
caaagcataggatgaatgactattcttccatgggcagttgaaagaaaact
tcaggagaaaagatgttagagcacagctgattgaggagaattgtgagaaa
gggcactggacaaaggcctctgcaacactatatacacacttcagacagac
caggagctatggagctgttcacaaaagaaaatagactgggaagtgtagag
aaattttaatccagcaacatagctactctagctcaaatacagccatgctc
ttggtatatacctttaattctaaacaatgtaggtaaggttagtttataaa
aagaagatgctatgtttgaaagtgacatttaattaaggggcagacaaggt
gatgaatcagagaaagatttcatacaatgagtcagctataggagatgccc
aactctcacaagaactgacaggaggaggcagttcagtgagtttagacaat
acaattcaatttagttgagttcagtagctgagttaggttgaattcagttc
aagggtagtttttacttggacagcattacagagacagatttcaaaaagaa
taagctagacactgggtgaagacataataagccagagaatgagatggagt
cagaaaattctaatagattgctagagttagtttgagcaaacagagcaatt
cagtcagaagcttagaaagccagttttgatcagtcagtttgagaagagat
tagaacacagcaactgattgacaagcagcagattcagaaagagctagaaa
aaggtgagcttatttagcaaggccctctatgacatacattgagaaaaatg
ttacattacaggaaaacacccattggtgtgtgtctctatagagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17387356_17388537
seq2: B6Ng01-332P09.b_51_1215

seq1  GAATTCTTATTTTTCTCACATTGCAAAAAAAGTTTATTTAAAAAAGTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTTTCTCACATTGCAAAAAAAGTTTATTTAAAAAAGTTCT  50

seq1  AGCAGCAAGAACAGTAACAAAACAAATGGAGAAAAGGACAAATAAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAGAACAGTAACAAAACAAATGGAGAAAAGGACAAATAAAACAA  100

seq1  AGAGGAAATTGTGTCCTGTGGGGTGTCTCCACTCTTAATCGAGTTCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATTGTGTCCTGTGGGGTGTCTCCACTCTTAATCGAGTTCTTTA  150

seq1  TATCGAGCAAACATGACTCTTCGAATGATGTCTCGGTATGTCTCATTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGAGCAAACATGACTCTTCGAATGATGTCTCGGTATGTCTCATTAGA  200

seq1  CTGTCTCTTGCTGGTTCTTCCTGGGGCACCACCACCAGGTCCCCTCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTTGCTGGTTCTTCCTGGGGCACCACCACCAGGTCCCCTCATCT  250

seq1  GCCCTTCAATCTCCTCTGATGAACCCAATCCAGGATGGCTATATCCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCAATCTCCTCTGATGAACCCAATCCAGGATGGCTATATCCCAGG  300

seq1  CCTGCCCCTTTCCTCCAGCCAGTGGCCTGCTGGGCACAGCCTCCTTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCCCTTTCCTCCAGCCAGTGGCCTGCTGGGCACAGCCTCCTTTGCT  350

seq1  ACTAGTGTCATTGTCTTCTTTATCAACAGGGTTTCGATCACTGTCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGTCATTGTCTTCTTTATCAACAGGGTTTCGATCACTGTCTGTTT  400

seq1  CTCTGGAGTATTTAATCCGTTTCCTTTCTGGAGAATCAAAAGATTGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTATTTAATCCGTTTCCTTTCTGGAGAATCAAAAGATTGTAGT  450

seq1  TTTTCCCTTCGGTCATTTCCTTTTTCTTTAAACCTTCCCGCCTGCTCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTCGGTCATTTCCTTTTTCTTTAAACCTTCCCGCCTGCTCTCT  500

seq1  CCTCTCCAGACAGGCGAGCTCTTGCTCTGACTGTTTTATCTTCCGGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCAGACAGGCGAGCTCTTGCTCTGACTGTTTTATCTTCCGGTGAA  550

seq1  TTTCCAGGTTTTGCTTGTGCATATTTGACAGTTGTTGGTATTTGGTAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTTTTGCTTGTGCATATTTGACAGTTGTTGGTATTTGGTAAGA  600

seq1  ACTTCTTTTTGGGAAACTGCCTTCTGCAGAGCAGACAAGCCAGTTTATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTTTGGGAAACTGCCTTCTGCAGAGCAGACAAGCCAGTTTATTC  650

seq1  CAGTCAGTGAGTTTGTCGTCTTCATTCTCTTTCTTGGTCATCTCCTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGTGAGTTTGTCGTCTTCATTCTCTTTCTTGGTCATCTCCTGGAG  700

seq1  AGGCTGTGGCTGTGAACAGGAGGGGCCTGTTCCTCTTCTTCCTCTTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGGCTGTGAACAGGAGGGGCCTGTTCCTCTTCTTCCTCTTCCTC  750

seq1  ATAGTCACTGTCTCCTCCATATTCACCCAGGAGACCAATCAATGGATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACTGTCTCCTCCATATTCACCCAGGAGACCAATCAATGGATTTA  800

seq1  CCACCTTAGGTGGAGGAGGACTCTCTTCCTTTTTCACAGTAGGAGGTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTAGGTGGAGGAGGACTCTCTTCCTTTTTCACAGTAGGAGGTAGA  850

seq1  GGCTTCTTAAAAACATCTTCTAGGGGAGACTTCCCCTCACTGGTACTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTTAAAAACATCTTCTAGGGGAGACTTCCCCTCACTGGTACTTTC  900

seq1  TTGAAACTTTGTCATTCCTCTGTCTTTTTTTCTCCTTGCCATCTCTTTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACTTTGTCATTCCTCTGTCTTTTTTTCTCCTTGCCATCTCTTTTA  950

seq1  GATGTTTCTTTCTTGCTATTTGACTTTCCTTGACTGGTAGATTTCTTTTC  1000
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTC-TTCTTGCTATTTGACTTTCCTTGACTGGTAGATTTCTTTTC  999

seq1  CTTGATTTCTTCTTCATCAGGTGACTCAGGGTCCTAGGGCACATAGATTT  1050
      |||||||||||| |||||| |||||||| ||||||| |||||||||||||
seq2  CTTGATTTCTTC-TCATCA-GTGACTCA-GGTCCTA-GGCACATAGATTT  1045

seq1  CTTGCTGGGTGTTGGGATCATAGTAAGTTCCTGCCAAGGGGTCATAATAG  1100
      | ||||||||||  |||||||||| |||  ||||  | ||||||| ||||
seq2  C-TGCTGGGTGT--GGATCATAGT-AGT--CTGC--AAGGGTCAT-ATAG  1086

seq1  TAGCCAGTTGCAGAATCATATA-TGTAGCAGTCAGGTGATGACTGTTGCC  1149
      ||| ||| ||||||   | ||| ||||||||||| |||||||||| ||||
seq2  TAG-CAG-TGCAGATCAAAATATTGTAGCAGTCAAGTGATGACTG-TGCC  1133

seq1  CTTGTCG-ATTTGTATCTGAGGACCAGTCTGAAT  1182
      || |||| ||| |||||||| |||||| ||||||
seq2  CTGGTCGAATTGGTATCTGA-GACCAG-CTGAAT  1165