BAC Information

Click to search

BAC

Clone NameB6Ng01-333F23
Chromosome1 (Build37)
Map Location 59,697,280 - 59,825,082
singlet/doubletdoublet
Overlap geneSumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2
Upstream geneAls2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2, Als2cr7, Fzd7, Gm973
Downstream geneAls2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333F23.bB6Ng01-333F23.g
ACCGA119204GA119205
length1,149327
definitionB6Ng01-333F23.b B6Ng01-333F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,823,919 - 59,825,082)(59,697,280 - 59,697,606)
sequence
gaattcttcattcctctataattatacgatgcttcatatgttacatgtag
cctcattatacacaaatctactatttcatacatcttgtcttttcacgcag
cgttatgtcttgacaggacaatggaatgttagaggaataaaatctgcata
tatgccagtggaactaggcttgccctcttgccctttgtcactgcctcgac
acacactgctcctaggtaggtagggtaggtattactctccctccctccag
atttgagcccacaaaaagacaaatgaaacaagataaatagttgttatatg
atatgaagattttgtggctgcaaataatcttgtaaaaaaaaaagtgacca
tccaccatactcagattcagttagcactgatgatataaagcatgcatctc
ttttaaaattctgtgggtaaagaactccccacccctcaaaaaagtgtgtt
atatacaaattaactcagtataactaaactacagagaaaaaaatactcat
caagaaactcaggtaacttttgtagtgtccaaactgagaaacacaaatga
agattactaaacttacagttagctacttgacaaaattcactaaccactca
ataatgctaaacatgattttctcactttagacaactatattcctgaagag
agataaaactgaaatattgacaaaagaattatttcagatgtattacaaaa
gctgacccccaagcaagcctgaattaccttattaaagctggtagtgagtg
catttaacaaatttttattaaaataatttattttaagcaagtacatctct
attttctaacaaattccaattatttgcatatcgactgttcttagaattag
ggagtccaaaacttactcagagtaaaagagattaaaatcatctcaaaaga
aattatatatttagtaaagctgacttgggtagctcacacttgtaacccca
gtgcttgggaggctgagacagaactgccaagagcttgcatccactagact
acacagagttgcagacacactgccctaaaacacccatccaccaccaaaga
tacgtatccagattccaaagatgacataaatatagtcttgcatatttttt
ctcctatcatacatcatgcacctaccagttactactcatcagaatactc
aaggccatcttcagttagttccaaaccagccttggctaaatgagattgtc
tcaaaaaactggagaaagactggtggtgtgtggcttaatcccagtgctca
aaagccaaaggcaggcagatagatttctgtgagtttgaggcaccctgttt
acattgtgagtttcagaacagcccaggatacatagtgagacccccgtctc
aaaaaaacttaagagaaacaacaacaaacaaatccaagcaaacaaaaaat
aggatttgcacagcatgtacaaggtcaagagattgatctagcacagacta
gaggggaaggaaatgggggaggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_59823919_59825082
seq2: B6Ng01-333F23.b_48_1196 (reverse)

seq1  GAGTATACTGATGAAGTGATGTAACTGGTAGGTGCAATTGATGTAATTGA  50
      |||||| |||||||   |  ||||||||||||||||  |||||||  || 
seq2  GAGTATTCTGATGA---GTAGTAACTGGTAGGTGCA--TGATGTA--TG-  42

seq1  ATAGGAGAAAAAATATTGCAAGACTAATAAATATTATGTCATTCTTTGGG  100
      ||||||||||||||| ||||||||| |||    |||||||| ||||||| 
seq2  ATAGGAGAAAAAATA-TGCAAGACT-ATA---TTTATGTCA-TCTTTGGA  86

seq1  ATCCTGGATACGTTATCTTTGGTGGTGG--TGGTGTTTTAGGGCAGTGTG  148
      || ||||||||| |||||||||||||||   |||||||||||||||||||
seq2  AT-CTGGATACG-TATCTTTGGTGGTGGATGGGTGTTTTAGGGCAGTGTG  134

seq1  TCCTGCAACTCTGTGTAGTCTAGTTGGATGCAAGCTCTTGGCAGTTCTGT  198
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  T-CTGCAACTCTGTGTAGTCTAG-TGGATGCAAGCTCTTGGCAGTTCTGT  182

seq1  CTCAGCCTCCCAAGCACTGGGGTTACAAGTGTGAGCTA-CCAAGTCAGCT  247
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCAGCCTCCCAAGCACTGGGGTTACAAGTGTGAGCTACCCAAGTCAGCT  232

seq1  TTACTAAATATATAATTTCTTTTGAGATGATTTTAATCTCTTTTACTCTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAATATATAATTTCTTTTGAGATGATTTTAATCTCTTTTACTCTG  282

seq1  AGTAAGTTTTGGACTCCCTAATTCTAAGAACAGTCGATATGCAAATAATT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTTTTGGACTCCCTAATTCTAAGAACAGTCGATATGCAAATAATT  332

seq1  GGAATTTGTTAGAAAATAGAGATGTACTTGCTTAAAATAAATTATTTTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGTTAGAAAATAGAGATGTACTTGCTTAAAATAAATTATTTTAA  382

seq1  TAAAAATTTGTTAAATGCACTCACTACCAGCTTTAATAAGGTAATTCAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTGTTAAATGCACTCACTACCAGCTTTAATAAGGTAATTCAGG  432

seq1  CTTGCTTGGGGGTCAGCTTTTGTAATACATCTGAAATAATTCTTTTGTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGGGGGTCAGCTTTTGTAATACATCTGAAATAATTCTTTTGTCA  482

seq1  ATATTTCAGTTTTATCTCTCTTCAGGAATATAGTTGTCTAAAGTGAGAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAGTTTTATCTCTCTTCAGGAATATAGTTGTCTAAAGTGAGAAA  532

seq1  ATCATGTTTAGCATTATTGAGTGGTTAGTGAATTTTGTCAAGTAGCTAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTTAGCATTATTGAGTGGTTAGTGAATTTTGTCAAGTAGCTAAC  582

seq1  TGTAAGTTTAGTAATCTTCATTTGTGTTTCTCAGTTTGGACACTACAAAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGTTTAGTAATCTTCATTTGTGTTTCTCAGTTTGGACACTACAAAA  632

seq1  GTTACCTGAGTTTCTTGATGAGTATTTTTTTCTCTGTAGTTTAGTTATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGAGTTTCTTGATGAGTATTTTTTTCTCTGTAGTTTAGTTATAC  682

seq1  TGAGTTAATTTGTATATAACACACTTTTTTGAGGGGTGGGGAGTTCTTTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAATTTGTATATAACACACTTTTTTGAGGGGTGGGGAGTTCTTTA  732

seq1  CCCACAGAATTTTAAAAGAGATGCATGCTTTATATCATCAGTGCTAACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGAATTTTAAAAGAGATGCATGCTTTATATCATCAGTGCTAACTG  782

seq1  AATCTGAGTATGGTGGATGGTCACTTTTTTTTTTACAAGATTATTTGCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGAGTATGGTGGATGGTCACTTTTTTTTTTACAAGATTATTTGCAG  832

seq1  CCACAAAATCTTCATATCATATAACAACTATTTATCTTGTTTCATTTGTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAATCTTCATATCATATAACAACTATTTATCTTGTTTCATTTGTC  882

seq1  TTTTTGTGGGCTCAAATCTGGAGGGAGGGAGAGTAATACCTACCCTACCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGGGCTCAAATCTGGAGGGAGGGAGAGTAATACCTACCCTACCT  932

seq1  ACCTAGGAGCAGTGTGTGTCGAGGCAGTGACAAAGGGCAAGAGGGCAAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGAGCAGTGTGTGTCGAGGCAGTGACAAAGGGCAAGAGGGCAAGC  982

seq1  CTAGTTCCACTGGCATATATGCAGATTTTATTCCTCTAACATTCCATTGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCCACTGGCATATATGCAGATTTTATTCCTCTAACATTCCATTGT  1032

seq1  CCTGTCAAGACATAACGCTGCGTGAAAAGACAAGATGTATGAAATAGTAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAAGACATAACGCTGCGTGAAAAGACAAGATGTATGAAATAGTAG  1082

seq1  ATTTGTGTATAATGAGGCTACATGTAACATATGAAGCATCGTATAATTAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGTATAATGAGGCTACATGTAACATATGAAGCATCGTATAATTAT  1132

seq1  AGAGGAATGAAGAATTC  1164
      |||||||||||||||||
seq2  AGAGGAATGAAGAATTC  1149

seq1: chr1_59697280_59697606
seq2: B6Ng01-333F23.g_74_400

seq1  AAGGCCATCTTCAGTTAGTTCCAAACCAGCCTTGGCTAAATGAGATTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATCTTCAGTTAGTTCCAAACCAGCCTTGGCTAAATGAGATTGTC  50

seq1  TCAAAAAACTGGAGAAAGACTGGTGGTGTGTGGCTTAATCCCAGTGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAACTGGAGAAAGACTGGTGGTGTGTGGCTTAATCCCAGTGCTCA  100

seq1  AAAGCCAAAGGCAGGCAGATAGATTTCTGTGAGTTTGAGGCACCCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCAAAGGCAGGCAGATAGATTTCTGTGAGTTTGAGGCACCCTGTTT  150

seq1  ACATTGTGAGTTTCAGAACAGCCCAGGATACATAGTGAGACCCCCGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGAGTTTCAGAACAGCCCAGGATACATAGTGAGACCCCCGTCTC  200

seq1  AAAAAAACTTAAGAGAAACAACAACAAACAAATCCAAGCAAACAAAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACTTAAGAGAAACAACAACAAACAAATCCAAGCAAACAAAAAAT  250

seq1  AGGATTTGCACAGCATGTACAAGGTCAAGAGATTGATCTAGCACAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTGCACAGCATGTACAAGGTCAAGAGATTGATCTAGCACAGACTA  300

seq1  GAGGGGAAGGAAATGGGGGAGGAAGGA  327
      |||||||||||||||||||||||||||
seq2  GAGGGGAAGGAAATGGGGGAGGAAGGA  327