BAC Information

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BAC

Clone NameB6Ng01-334F14
Chromosome1 (Build37)
Map Location 162,338,962 - 162,499,228
singlet/doubletdoublet
Overlap geneRabgap1l
Upstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334F14.bB6Ng01-334F14.g
ACCGA119873GA119874
length1,1351,075
definitionB6Ng01-334F14.b B6Ng01-334F14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,338,962 - 162,340,087)(162,498,153 - 162,499,228)
sequence
gaattctcctcaagagcattataatctcctaacggtgaataaataaacac
attttaattagggggaattttgtagtttaagtgtacattgtataggctgt
tactaaagaactttgtgctgcctacttctgctttaagcttcacataagct
atggttcttataatactgaatctgggaaacaaatataaacagaaataaaa
tctgtagtaaattgtgactatttccaatgaaatacgtggacattacaggg
ctggggtttccagtgcttaaagaacaataattggatcttgcccatcattt
tcttagcaatgttgctggagattaacagttaccaagagaaaaatgctact
gtgcacatcaatgctggtagtgaagtctagaagtcactgtggaatgcagt
ttcaatggctgtacaggatgggatgcctgaagcagaaagccgggaccatc
cagatgtattggttgttgcttgcttcctcagaagccttgctgagagaact
ctcttgtgctgtgtgagtttgtaacttacataataaccacatcagagtaa
acttccctattccctcctgctttttatttttctgaaattgacttggctat
cttggaacccattttcattgatccatctgcctctgcctcccaaatgctgg
gactagaaatgtggaccaccacacttaactaaaattaataaatcatggtg
tttctgaaataatgcaaaaagaaaattcatagaaaatagtttcactagaa
taatatctgtgaaagggaagatctgtgctaggcatgtgacagtgctaacc
cacttgattcttacaacactgcttttcttcttgttgttgtacttaatttt
taaatattattttattttatgtgagtggatatttcacctgcatgtatgcc
tgtatatcatgtgtgtgccaaagaggttattgaatcccctgtgtctggag
ttacagatatatgtgaatgctgggtatcgcactgagggccctctggagtt
acagaatatatgtgaatgctgggtatcgcactgaggccctctggagttac
agaatatatgtgaaatgcttgggaatcgcactgaggcttctctggagtta
cagaaatattgttgaatgcttgggtatcacactga
gaattctgatgttattgattaataagggggaatatgaagcaatttcaaat
gagcaataattagtttttactccaaatcaatgcagtttaaaaatcttggt
aacactgctatttgacacatattcatattcattctctctctctctccctc
ttttcccctctctctttggttagtaatatagttgtaagctaacccatcag
agatttttttaattttctttgtttagtaaatgcatgacaaaatgaataaa
taatgtggataattattttgagagtacgttaaccttggaacattaaaaag
caagcaaacatctctaatttttatacactatgtctttttcagtcactcag
gtagtagattcattatttgaaccatgttaatctccaaaaatctgttaatg
cctgtgctggctttttttttaatatcaacttgacacaccttttagaagag
tgaacctcaattgagaaaactttcccaccacactgtgccgtgaggaagcc
attagcatgttttctggattgatatttgacggaggacccagttcactgtg
ggtggtggtcctggggctctcagaaagcaggctgagcaggtcatgagaag
caataagcagcactcctctttggcctctgtatccatttcttccctgactt
ctctagatgattgactataagctgtaaattgaaataaacccttcccaagt
tgtttttggtcatgtgttttatcacaccaatacaaaaataactaagacaa
tgggtttgtcatgtgctttctttttaattttttaattattttacttattt
acatcctaaatgttgccccctccagtcgtcccccccccagctacttcccc
atctcccctcttcttttctgagagggctccccacccccacccctctcacc
aatcacatcccatttccctggggcatcaagtctacaggatttagcacttc
ccttcccattgaagccagacaaggcagattgcttttctttaaaagagtaa
agatagaaagcttgggtgtcgggatgcatgaattgtagtcctgccaactc
agtaagactggtgaggaacgtaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_162338962_162340087
seq2: B6Ng01-334F14.b_48_1182

seq1  GAATTCTCCTCAAGAGCATTATAATCTCCTAACGGTGAATAAATAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCAAGAGCATTATAATCTCCTAACGGTGAATAAATAAACAC  50

seq1  ATTTTAATTAGGGGGAATTTTGTAGTTTAAGTGTACATTGTATAGGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTAGGGGGAATTTTGTAGTTTAAGTGTACATTGTATAGGCTGT  100

seq1  TACTAAAGAACTTTGTGCTGCCTACTTCTGCTTTAAGCTTCACATAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAAGAACTTTGTGCTGCCTACTTCTGCTTTAAGCTTCACATAAGCT  150

seq1  ATGGTTCTTATAATACTGAATCTGGGAAACAAATATAAACAGAAATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCTTATAATACTGAATCTGGGAAACAAATATAAACAGAAATAAAA  200

seq1  TCTGTAGTAAATTGTGACTATTTCCAATGAAATACGTGGACATTACAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTAAATTGTGACTATTTCCAATGAAATACGTGGACATTACAGGG  250

seq1  CTGGGGTTTCCAGTGCTTAAAGAACAATAATTGGATCTTGCCCATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTTCCAGTGCTTAAAGAACAATAATTGGATCTTGCCCATCATTT  300

seq1  TCTTAGCAATGTTGCTGGAGATTAACAGTTACCAAGAGAAAAATGCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCAATGTTGCTGGAGATTAACAGTTACCAAGAGAAAAATGCTACT  350

seq1  GTGCACATCAATGCTGGTAGTGAAGTCTAGAAGTCACTGTGGAATGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACATCAATGCTGGTAGTGAAGTCTAGAAGTCACTGTGGAATGCAGT  400

seq1  TTCAATGGCTGTACAGGATGGGATGCCTGAAGCAGAAAGCCGGGACCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGCTGTACAGGATGGGATGCCTGAAGCAGAAAGCCGGGACCATC  450

seq1  CAGATGTATTGGTTGTTGCTTGCTTCCTCAGAAGCCTTGCTGAGAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTATTGGTTGTTGCTTGCTTCCTCAGAAGCCTTGCTGAGAGAACT  500

seq1  CTCTTGTGCTGTGTGAGTTTGTAACTTACATAATAACCACATCAGAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGCTGTGTGAGTTTGTAACTTACATAATAACCACATCAGAGTAA  550

seq1  ACTTCCCTATTCCCTCCTGCTTTTTATTTTTCTGAAATTGACTTGGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTATTCCCTCCTGCTTTTTATTTTTCTGAAATTGACTTGGCTAT  600

seq1  CTTGGAACCCATTTTCATTGATCCATCTGCCTCTGCCTCCCAAATGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACCCATTTTCATTGATCCATCTGCCTCTGCCTCCCAAATGCTGG  650

seq1  GACTAGAAATGTGGACCACCACACTTAACTAAAATTAATAAATCATGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAAATGTGGACCACCACACTTAACTAAAATTAATAAATCATGGTG  700

seq1  TTTCTGAAATAATGCAAAAAGAAAATTCATAGAAAATAGTTTCACTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAATAATGCAAAAAGAAAATTCATAGAAAATAGTTTCACTAGAA  750

seq1  TAATATCTGTGAAAGGGAAGATCTGTGCTAGGCATGTGACAGTGCTAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTGTGAAAGGGAAGATCTGTGCTAGGCATGTGACAGTGCTAACC  800

seq1  CACTTGATTCTTACAACACTGCTTTTCTTCTTGTTGTTGTACTTAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATTCTTACAACACTGCTTTTCTTCTTGTTGTTGTACTTAATTTT  850

seq1  TAAATATTATTTTATTTTATGTGAGTGGATATTTCACCTGCATGTATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTATTTTATTTTATGTGAGTGGATATTTCACCTGCATGTATGCC  900

seq1  TGTATATCATGTGTGTGCCAAAGAGGTTATTGAATCCCCTGTGTCTGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCATGTGTGTGCCAAAGAGGTTATTGAATCCCCTGTGTCTGGAG  950

seq1  TTACAGATATATGTGAATGCTGGGTATCGCACTGA-GGCCCTCTGGAGTT  999
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTACAGATATATGTGAATGCTGGGTATCGCACTGAGGGCCCTCTGGAGTT  1000

seq1  ACAG-ATATATGTGAATGCTGGGTATCGCACTGAGGCCCTCTGGAGTTAC  1048
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATATATGTGAATGCTGGGTATCGCACTGAGGCCCTCTGGAGTTAC  1050

seq1  AG-ATATATGTG-AATGC-TGGGTATCGCACTGAGGC-TCTCTGGAGTTA  1094
      || ||||||||| ||||| |||| ||||||||||||| ||||||||||||
seq2  AGAATATATGTGAAATGCTTGGGAATCGCACTGAGGCTTCTCTGGAGTTA  1100

seq1  CAGATATAT--GTGAATGC-TGGGTATCACACTGA  1126
      |||| ||||   ||||||| |||||||||||||||
seq2  CAGAAATATTGTTGAATGCTTGGGTATCACACTGA  1135

seq1: chr1_162498153_162499228
seq2: B6Ng01-334F14.g_67_1141 (reverse)

seq1  TCTTAACGTTCCTCCACCAGTCTACCTGAGTTGCCAGGACTAC-AGTCAT  49
      |||| |||||||| |||||||||  |||||||| ||||||||| | ||||
seq2  TCTT-ACGTTCCT-CACCAGTCTTACTGAGTTGGCAGGACTACAATTCAT  48

seq1  GCATCCCGACACCC-AGCTTTCTAATCTTTTCTCTTTTTAAGAAAATGCA  98
      |||||||||||||| |||||||| |||||| ||||||| |||||||   |
seq2  GCATCCCGACACCCAAGCTTTCT-ATCTTTACTCTTTTAAAGAAAAGCAA  97

seq1  TCTGCCTTGTCTGGCCTCAATGGGAAGGGAAGTGCCTAATCCTGTAGACT  148
      ||||||||||||||| |||||||||||||||||||  |||||||||||||
seq2  TCTGCCTTGTCTGGCTTCAATGGGAAGGGAAGTGCTAAATCCTGTAGACT  147

seq1  TGATGCCCCAGGGAATGGGGATGTGATTGGTGGGAGGGGTGGGGGTGGGG  198
      |||||||||||||||  ||||||||||||||| |||||||||||||||||
seq2  TGATGCCCCAGGGAAATGGGATGTGATTGGTGAGAGGGGTGGGGGTGGGG  197

seq1  AGCCCTCTCAGAAAAGGAGAGGGGAGATGGGGAAGTAGCTGGGGGGGGGA  248
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCCCTCTCAGAAAAGAAGAGGGGAGATGGGGAAGTAGCTGGGGGGGGGA  247

seq1  CGACTGGAGGGGGCAACATTTAGGATGTAAATAAGTAAAATAATTAAAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGGAGGGGGCAACATTTAGGATGTAAATAAGTAAAATAATTAAAAA  297

seq1  ATTAAAAAGAAAGCACATGACAAACCCATTGTCTTAGTTATTTTTGTATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGAAAGCACATGACAAACCCATTGTCTTAGTTATTTTTGTATT  347

seq1  GGTGTGATAAAACACATGACCAAAAACAACTTGGGAAGGGTTTATTTCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATAAAACACATGACCAAAAACAACTTGGGAAGGGTTTATTTCAA  397

seq1  TTTACAGCTTATAGTCAATCATCTAGAGAAGTCAGGGAAGAAATGGATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGCTTATAGTCAATCATCTAGAGAAGTCAGGGAAGAAATGGATAC  447

seq1  AGAGGCCAAAGAGGAGTGCTGCTTATTGCTTCTCATGACCTGCTCAGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCAAAGAGGAGTGCTGCTTATTGCTTCTCATGACCTGCTCAGCCT  497

seq1  GCTTTCTGAGAGCCCCAGGACCACCACCCACAGTGAACTGGGTCCTCCGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGAGAGCCCCAGGACCACCACCCACAGTGAACTGGGTCCTCCGT  547

seq1  CAAATATCAATCCAGAAAACATGCTAATGGCTTCCTCACGGCACAGTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATCAATCCAGAAAACATGCTAATGGCTTCCTCACGGCACAGTGTG  597

seq1  GTGGGAAAGTTTTCTCAATTGAGGTTCACTCTTCTAAAAGGTGTGTCAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAGTTTTCTCAATTGAGGTTCACTCTTCTAAAAGGTGTGTCAAG  647

seq1  TTGATATTAAAAAAAAAGCCAGCACAGGCATTAACAGATTTTTGGAGATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTAAAAAAAAAGCCAGCACAGGCATTAACAGATTTTTGGAGATT  697

seq1  AACATGGTTCAAATAATGAATCTACTACCTGAGTGACTGAAAAAGACATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTTCAAATAATGAATCTACTACCTGAGTGACTGAAAAAGACATA  747

seq1  GTGTATAAAAATTAGAGATGTTTGCTTGCTTTTTAATGTTCCAAGGTTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATAAAAATTAGAGATGTTTGCTTGCTTTTTAATGTTCCAAGGTTAA  797

seq1  CGTACTCTCAAAATAATTATCCACATTATTTATTCATTTTGTCATGCATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACTCTCAAAATAATTATCCACATTATTTATTCATTTTGTCATGCATT  847

seq1  TACTAAACAAAGAAAATTAAAAAAATCTCTGATGGGTTAGCTTACAACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAACAAAGAAAATTAAAAAAATCTCTGATGGGTTAGCTTACAACTA  897

seq1  TATTACTAACCAAAGAGAGAGGGGAAAAGAGGGAGAGAGAGAGAGAATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTAACCAAAGAGAGAGGGGAAAAGAGGGAGAGAGAGAGAGAATGA  947

seq1  ATATGAATATGTGTCAAATAGCAGTGTTACCAAGATTTTTAAACTGCATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATATGTGTCAAATAGCAGTGTTACCAAGATTTTTAAACTGCATT  997

seq1  GATTTGGAGTAAAAACTAATTATTGCTCATTTGAAATTGCTTCATATTCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGGAGTAAAAACTAATTATTGCTCATTTGAAATTGCTTCATATTCC  1047

seq1  CCCTTATTAATCAATAACATCAGAATTC  1076
      ||||||||||||||||||||||||||||
seq2  CCCTTATTAATCAATAACATCAGAATTC  1075