BAC Information

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BAC

Clone NameB6Ng01-334O10
Chromosome1 (Build37)
Map Location 56,246,689 - 56,359,539
singlet/doubletdoublet
Overlap genenone
Upstream geneRftn2, Mars2, LOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
Downstream geneHsfy2, Satb2, EG329160, 9130024F11Rik, LOC100042869, LOC383509
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334O10.bB6Ng01-334O10.g
ACCGA120289GA120290
length1,1071,193
definitionB6Ng01-334O10.b B6Ng01-334O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,358,433 - 56,359,539)(56,246,689 - 56,247,885)
sequence
gaattctctaactcagtctgaggcaagggaaaatttagaagatagtaaaa
agccttgtcatctctaggcaaaaactgtcctgggggtgagaaatagaggt
cccagaggtgacgtctgcaccacggaggcttcagaatgcacacacgagtc
actgtaaagactacaggagcacacagcgacacatttaattttgctaagtc
agtttgcatagcatttcaggattaatgggtagaatgcagttcataaatgt
cagttataactataatgttcaccctgtgccataatttaattccatgaagc
taaaggctagtaaatttagaaccaataaaaagaaatacttccttccattg
tatatttcaccccactgagaccactgccaaagggtcattgacacggggcc
agctctgaggaggaatttgacagtcctcagatatatatctggctagtcaa
agcggaggtgatttaagagttacaaaaatcctatgcagcttgaatgggag
tcagggaggtcctttaacctgtgtgctatttacaactccaagtggatgaa
gcacaaaagtttttaaaagtaattaattaattaacttttttattttacat
cctgatcgtggcccctgtccctcctctcctcccagtctcactcttagaaa
tccctctcccatcacaccttcgtggagaagagcaagctccccttgggtac
caccctaccttgagacatctagtcacagtaggcttaagcacatcctctcc
ctcttactatatagttcagttaagggaaggggatctaacatcgggcaact
gaatcagagacaccctgagtttcgatgctatttatagggaaggaaatcag
atgaatcttaactaagagcagatatgtgtattctttgcaactgtaaatgc
tgaaagtccagtgaattcaaatacttagctctcattagtaatggaggctt
ccagatcatgaaaggactgagactctctccagtttccaccaaatttccct
gattttagctatatatttggggtcaatatcctctttcctagtgatatcta
aaccaaacatttcatctgttagagaacacaccacccctgaagtaaacatt
cctactg

gaattcactctccttgctctcagaacctgaccaacatgcattggtaatag
ttgtaacgggggcagaagcagccaagggaatctatgagcacatgaacaca
tgtgattagaggaggaagggccctgcagaaggaagcattcttaactcctg
attcctttccccagacacaatcaagacacaacagagtaactgtcgtttca
atcttgctgaaggacaaaaagaaagaggagcttggaaaaactagaaagta
aaggggagacattgagaggaagaagctcaggagaaagacccactgactgt
tactctagtcttggggtcagctctgaactgtccatccacagatttcatcc
caaaccatctgtggatggctttaaagaaaagagatgccaacctccagcat
gtatccatatcaccatggaacttctgactaaccactaatgggcacaaacc
aaattgtattgtactggaacatgtctgaaaacttgattaacattttgaaa
ttgaaacatttagactggtcagagcttgcagcttgaagttgcctaattgt
ttggtgtgataaaagcaaagaaatccccttttcctctcctcctcccctct
cccacccaggtcccttcctctgtttcccatgattcttttcttccccttct
aagtgggattaaaacatcctcacttgggcatttctgcttgttacacttct
tacagtctttgggttgtatcctaggtattatgtactttttgtttaataac
cacttatcagtgagtacataccatgcatgtccctttgagtctgagttacc
tcacttagagtgatattttctagtctgctccattttcctgcaagatgcat
gaggtccttgttcttaagagcttattagtattccattgtataaatgaacc
acattttctgaatctattcatcccagttgtttccagcttctgactattac
aaataagctgctacagacatagtagagcaaagcagtctaacaatgaggaa
atgaagggaggttagtattactcgcatttagaatatccacataagactac
atgtagacagtacactacccatctattagaatcatagaggcttaaagaac
gcttctggacatgtgctcatcggttggactgaaggcacttgaattccgaa
tatttagacgcttttttaaggcaatttcaaatatgttccatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_56358433_56359539
seq2: B6Ng01-334O10.b_45_1151 (reverse)

seq1  CAGTAGGAAATGTTACTTCCAGGGT-GTGTG-TCTCTAACAGAATGAAAT  48
      |||||||||   |||||||  |||| ||||| |||||||||| |||||||
seq2  CAGTAGGAATGTTTACTTCAGGGGTGGTGTGTTCTCTAACAG-ATGAAAT  49

seq1  GTTTGGTTTAGATATCACTAGGAAAGAGATTAATTGA-CCCAAATATATA  97
      ||||||||||||||||||||||||||||  | ||||| ||||||||||||
seq2  GTTTGGTTTAGATATCACTAGGAAAGAGGAT-ATTGACCCCAAATATATA  98

seq1  GCTAAAATTCAGGGAAATTTGGTGGAAACTGGAGAGAGTCTCAGTCCCTT  147
      ||||||| ||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTAAAA-TCAGGGAAATTTGGTGGAAACTGGAGAGAGTCTCAGTCCTTT  147

seq1  CATGATCTGGAAGCCTCCATTACTAATGAGAGCTAAGTATTTGAATTCAC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTGGAAGCCTCCATTACTAATGAGAGCTAAGTATTTGAATTCAC  197

seq1  TGGACTTTCAGCATTTACAGTTGCAAAGAATACACATATCTGCTCTTAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTTCAGCATTTACAGTTGCAAAGAATACACATATCTGCTCTTAGT  247

seq1  TAAGATTCATCTGATTTCCTTCCCTATAAATAGCATCGAAACTCAGGGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCATCTGATTTCCTTCCCTATAAATAGCATCGAAACTCAGGGTG  297

seq1  TCTCTGATTCAGTTGCCCGATGTTAGATCCCCTTCCCTTAACTGAACTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGATTCAGTTGCCCGATGTTAGATCCCCTTCCCTTAACTGAACTAT  347

seq1  ATAGTAAGAGGGAGAGGATGTGCTTAAGCCTACTGTGACTAGATGTCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGAGGGAGAGGATGTGCTTAAGCCTACTGTGACTAGATGTCTCA  397

seq1  AGGTAGGGTGGTACCCAAGGGGAGCTTGCTCTTCTCCACGAAGGTGTGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGGTGGTACCCAAGGGGAGCTTGCTCTTCTCCACGAAGGTGTGAT  447

seq1  GGGAGAGGGATTTCTAAGAGTGAGACTGGGAGGAGAGGAGGGACAGGGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGGATTTCTAAGAGTGAGACTGGGAGGAGAGGAGGGACAGGGGC  497

seq1  CACGATCAGGATGTAAAATAAAAAAGTTAATTAATTAATTACTTTTAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATCAGGATGTAAAATAAAAAAGTTAATTAATTAATTACTTTTAAAA  547

seq1  ACTTTTGTGCTTCATCCACTTGGAGTTGTAAATAGCACACAGGTTAAAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGTGCTTCATCCACTTGGAGTTGTAAATAGCACACAGGTTAAAGG  597

seq1  ACCTCCCTGACTCCCATTCAAGCTGCATAGGATTTTTGTAACTCTTAAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCTGACTCCCATTCAAGCTGCATAGGATTTTTGTAACTCTTAAAT  647

seq1  CACCTCCGCTTTGACTAGCCAGATATATATCTGAGGACTGTCAAATTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCGCTTTGACTAGCCAGATATATATCTGAGGACTGTCAAATTCCT  697

seq1  CCTCAGAGCTGGCCCCGTGTCAATGACCCTTTGGCAGTGGTCTCAGTGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGCTGGCCCCGTGTCAATGACCCTTTGGCAGTGGTCTCAGTGGG  747

seq1  GTGAAATATACAATGGAAGGAAGTATTTCTTTTTATTGGTTCTAAATTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATATACAATGGAAGGAAGTATTTCTTTTTATTGGTTCTAAATTTA  797

seq1  CTAGCCTTTAGCTTCATGGAATTAAATTATGGCACAGGGTGAACATTATA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTTAGCTTCATGGAATTAAATTATGGCACAGGGTGAACATTATA  847

seq1  GTTATAACTGACATTTATGAACTGCATTCTACCCATTAATCCTGAAATGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACTGACATTTATGAACTGCATTCTACCCATTAATCCTGAAATGC  897

seq1  TATGCAAACTGACTTAGCAAAATTAAATGTGTCGCTGTGTGCTCCTGTAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAACTGACTTAGCAAAATTAAATGTGTCGCTGTGTGCTCCTGTAG  947

seq1  TCTTTACAGTGACTCGTGTGTGCATTCTGAAGCCTCCGTGGTGCAGACGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAGTGACTCGTGTGTGCATTCTGAAGCCTCCGTGGTGCAGACGT  997

seq1  CACCTCTGGGACCTCTATTTCTCACCCCCAGGACAGTTTTTGCCTAGAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGGGACCTCTATTTCTCACCCCCAGGACAGTTTTTGCCTAGAGA  1047

seq1  TGACAAGGCTTTTTACTATCTTCTAAATTTTCCCTTGCCTCAGACTGAGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGCTTTTTACTATCTTCTAAATTTTCCCTTGCCTCAGACTGAGT  1097

seq1  TAGAGAATTC  1107
      ||||||||||
seq2  TAGAGAATTC  1107


seq1: chr1_56246689_56247885
seq2: B6Ng01-334O10.g_69_1261

seq1  GAATTCACTCTCCTTGCTCTCAGAACCTGACCAACATGCATTGGTAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCCTTGCTCTCAGAACCTGACCAACATGCATTGGTAATAG  50

seq1  TTGTAACGGGGGCAGAAGCAGCCAAGGGAATCTATGAGCACATGAACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACGGGGGCAGAAGCAGCCAAGGGAATCTATGAGCACATGAACACA  100

seq1  TGTGATTAGAGGAGGAAGGGCCCTGCAGAAGGAAGCATTCTTAACTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTAGAGGAGGAAGGGCCCTGCAGAAGGAAGCATTCTTAACTCCTG  150

seq1  ATTCCTTTCCCCAGACACAATCAAGACACAACAGAGTAACTGTCGTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCCCCAGACACAATCAAGACACAACAGAGTAACTGTCGTTTCA  200

seq1  ATCTTGCTGAAGGACAAAAAGAAAGAGGAGCTTGGAAAAACTAGAAAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTGAAGGACAAAAAGAAAGAGGAGCTTGGAAAAACTAGAAAGTA  250

seq1  AAGGGGAGACATTGAGAGGAAGAAGCTCAGGAGAAAGACCCACTGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAGACATTGAGAGGAAGAAGCTCAGGAGAAAGACCCACTGACTGT  300

seq1  TACTCTAGTCTTGGGGTCAGCTCTGAACTGTCCATCCACAGATTTCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGTCTTGGGGTCAGCTCTGAACTGTCCATCCACAGATTTCATCC  350

seq1  CAAACCATCTGTGGATGGCTTTAAAGAAAAGAGATGCCAACCTCCAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATCTGTGGATGGCTTTAAAGAAAAGAGATGCCAACCTCCAGCAT  400

seq1  GTATCCATATCACCATGGAACTTCTGACTAACCACTAATGGGCACAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATATCACCATGGAACTTCTGACTAACCACTAATGGGCACAAACC  450

seq1  AAATTGTATTGTACTGGAACATGTCTGAAAACTTGATTAACATTTTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATTGTACTGGAACATGTCTGAAAACTTGATTAACATTTTGAAA  500

seq1  TTGAAACATTTAGACTGGTCAGAGCTTGCAGCTTGAAGTTGCCTAATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACATTTAGACTGGTCAGAGCTTGCAGCTTGAAGTTGCCTAATTGT  550

seq1  TTGGTGTGATAAAAGCAAAGAAATCCCCTTTTCCTCTCCTCCTCCCCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTGATAAAAGCAAAGAAATCCCCTTTTCCTCTCCTCCTCCCCTCT  600

seq1  CCCACCCAGGTCCCTTCCTCTGTTTCCCATGATTCTTTTCTTCCCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCAGGTCCCTTCCTCTGTTTCCCATGATTCTTTTCTTCCCCTTCT  650

seq1  AAGTGGGATTAAAACATCCTCACTTGGGCATTTCTGCTTGTTACACTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGATTAAAACATCCTCACTTGGGCATTTCTGCTTGTTACACTTCT  700

seq1  TACAGTCTTTGGGTTGTATCCTAGGTATTATGTACTTTTTGTTTAATAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTTTGGGTTGTATCCTAGGTATTATGTACTTTTTGTTTAATAAC  750

seq1  CACTTATCAGTGAGTACATACCATGCATGTCCCTTTGAGTCTGAGTTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATCAGTGAGTACATACCATGCATGTCCCTTTGAGTCTGAGTTACC  800

seq1  TCACTTAGAGTGATATTTTCTAGTCTGCTCCATTTTCCTGCAAGATGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTAGAGTGATATTTTCTAGTCTGCTCCATTTTCCTGCAAGATGCAT  850

seq1  GAGGTCCTTGTTCTTAAGAGCTTATTAGTATTCCATTGTATAAATGAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTTGTTCTTAAGAGCTTATTAGTATTCCATTGTATAAATGAACC  900

seq1  ACATTTTCTGAATCTATTCATCCCAGTTGTTTCCAGCTTCTGACTATTAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGAATCTATTCATCCCAGTTGTTTCCAGCTTCTGACTATTAC  950

seq1  AAATAAAGCTGCTACAGACATAGTAGAGCAAAAGCAGTCT-ACAATGAGG  999
      |||| |||||||||||||||||||||||| |||||||||| |||||||||
seq2  AAAT-AAGCTGCTACAGACATAGTAGAGC-AAAGCAGTCTAACAATGAGG  998

seq1  AAATGAAGGGAGGTTAAGTATTACTCGCATTTAGGAATATCCACATTAAG  1049
      ||||||||||||||| ||||||||||||||||| ||||||||||| ||||
seq2  AAATGAAGGGAGGTT-AGTATTACTCGCATTTA-GAATATCCACA-TAAG  1045

seq1  ACTAACATGTAGACAGTACACCTACACATCTATTAG-ATCATAGAGCTTT  1098
      ||| |||||||||||||||| |||| |||||||||| |||||||||  ||
seq2  ACT-ACATGTAGACAGTACA-CTACCCATCTATTAGAATCATAGAGGCTT  1093

seq1  AAAAGACAGCTCTGGACCATGTGCTCATCG--TTGAGTGAAGGAACTGAA  1146
      |||  ||   |||||| |||||||||||||  | || |||||| |||  |
seq2  AAAGAACGCTTCTGGA-CATGTGCTCATCGGTTGGACTGAAGGCACTTGA  1142

seq1  ATATTCAGAATATTTAGACAGCTTTTTATAGG-AATTT-AAATATGTT-C  1193
        |||| |||||||||||| |||||||  ||| ||||| ||||||||| |
seq2  --ATTCCGAATATTTAGAC-GCTTTTTTAAGGCAATTTCAAATATGTTCC  1189

seq1  ATGA  1197
      ||||
seq2  ATGA  1193


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