BAC Information

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BAC

Clone NameB6Ng01-335E10
Chromosome1 (Build37)
Map Location 93,657,863 - 93,793,396
singlet/doubletdoublet
Overlap geneTwist2
Upstream geneCol6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
Downstream geneHdac4, LOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335E10.bB6Ng01-335E10.g
ACCGA120558GA120559
length892197
definitionB6Ng01-335E10.b B6Ng01-335E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,792,507 - 93,793,396)(93,657,863 - 93,658,059)
sequence
gaattcttggacttcctgttggtagccagccagtgttggactagctggac
cacagcctataagcctctatctatctatctatctatctatctatctatct
atctatctatctatcttcattctattagtctgttcctctagagaactcta
atacacctattttctggacattccagacagtatccaccgtctgggcatgg
ccatagttttacccactgtcaggatggtgaccatagtccttacctactgt
ctggacatggtcatagtctttaccccctgtctggacatggtcatagtctt
tacccctgtctggacatggttatagtctttgcgccctgtctggatatgcc
cacactacttgttacccacggtctggacatggccatactccgtccccaac
ttgcttcacgttttcacagttgtgaacttccagtcgtcttctgtgacatt
taaaaacgaagcatggagagccagccccccgccccacccccagagagtta
caatgcagtttcctcaaggaggcaccacagcaaagagaagatgtgaagat
ggcttgtgtctaggaagaacatcccacagagagcagtccacagagctggt
gacatagtgaggaagaacgcgtgtcctccctcttagggtgctagggcagt
tgaaggatctatggtgtaactttaatttttttcaatgtttacttttaatg
atggttcttaaatgctttaacctcccttctagcccacacccattagaggt
agtggaaagaaagaatatggacagggtgcatgggggcagggggggggcag
cagggcagtagttctgtttgataaaggtctttggagcaatgccctgcctg
tattgcctgggaaattggcagttcagttcaccggttagcagc
tccggataatgtcagttagaaaacaatgttgggttgggcagtggtggcat
acatctttaaccccagcacatgggaggcagaggcaggggaatctctgggc
tcgaggccagcctggactatagagtgagttccaagactgacaggctgtac
agagaaaccctgtcttgaagaaaagaaaatgaggagaggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_93792507_93793396
seq2: B6Ng01-335E10.b_46_937 (reverse)

seq1  GCTGCTAACCTGTGAACTGAACTGCCAATTT-CCAGACAATACAGGCA-G  48
      |||||||||| |||||||||||||||||||| |||| ||||||||||| |
seq2  GCTGCTAACCGGTGAACTGAACTGCCAATTTCCCAGGCAATACAGGCAGG  50

seq1  GCATTGCTCCAAAGAACCTTTCTC-AACAGAACTACTCCCCTGCTGCCCC  97
      |||||||||||||| |||||| || |||||||||||| ||||||||||||
seq2  GCATTGCTCCAAAG-ACCTTTATCAAACAGAACTACTGCCCTGCTGCCCC  99

seq1  CCCCCTGCCCCCATGCACCCTGTCCATATTCTTTCTTTCCACTACCTCTA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCCCCATGCACCCTGTCCATATTCTTTCTTTCCACTACCTCTA  149

seq1  ATGGGTGTGGGCTAGAAGGGAGGTTAAAGCATTTAAGAACCATCATTAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTGGGCTAGAAGGGAGGTTAAAGCATTTAAGAACCATCATTAAA  199

seq1  AGTAAACATTGAAAAAAATTAAAGTTACACCATAGATCCTTCAACTGCCC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACATTGAAAAAAATTAAAGTTACACCATAGATCCTTCAACTGCCC  249

seq1  TAGCACCCTAAGAGGGAGGACACGCGTTCTTCCTCACTATGTCACCAGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCCTAAGAGGGAGGACACGCGTTCTTCCTCACTATGTCACCAGCT  299

seq1  CTGTGGACTGCTCTCTGTGGGATGTTCTTCCTAGACACAAGCCATCTTCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGACTGCTCTCTGTGGGATGTTCTTCCTAGACACAAGCCATCTTCA  349

seq1  CATCTTCTCTTTGCTGTGGTGCCTCCTTGAGGAAACTGCATTGTAACTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTCTTTGCTGTGGTGCCTCCTTGAGGAAACTGCATTGTAACTCT  399

seq1  CTGGGGGTGGGGCGGGGGGCTGGCTCTCCATGCTTCGTTTTTAAATGTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTGGGGCGGGGGGCTGGCTCTCCATGCTTCGTTTTTAAATGTCA  449

seq1  CAGAAGACGACTGGAAGTTCACAACTGTGAAAACGTGAAGCAAGTTGGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGACGACTGGAAGTTCACAACTGTGAAAACGTGAAGCAAGTTGGGG  499

seq1  ACGGAGTATGGCCATGTCCAGACCGTGGGTAACAAGTAGTGTGGGCATAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGTATGGCCATGTCCAGACCGTGGGTAACAAGTAGTGTGGGCATAT  549

seq1  CCAGACAGGGCGCAAAGACTATAACCATGTCCAGACAGGGGTAAAGACTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACAGGGCGCAAAGACTATAACCATGTCCAGACAGGGGTAAAGACTA  599

seq1  TGACCATGTCCAGACAGGGGGTAAAGACTATGACCATGTCCAGACAGTAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGTCCAGACAGGGGGTAAAGACTATGACCATGTCCAGACAGTAG  649

seq1  GTAAGGACTATGGTCACCATCCTGACAGTGGGTAAAACTATGGCCATGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGACTATGGTCACCATCCTGACAGTGGGTAAAACTATGGCCATGCC  699

seq1  CAGACGGTGGATACTGTCTGGAATGTCCAGAAAATAGGTGTATTAGAGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACGGTGGATACTGTCTGGAATGTCCAGAAAATAGGTGTATTAGAGTT  749

seq1  CTCTAGAGGAACAGACTAATAGAATGAAGATAGATAGATAGATAGATAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGGAACAGACTAATAGAATGAAGATAGATAGATAGATAGATAGA  799

seq1  TAGATAGATAGATAGATAGATAGATAGAGGCTTATAGGCTGTGGTCCAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATAGATAGAGGCTTATAGGCTGTGGTCCAGC  849

seq1  TAGTCCAACACTGGCTGGCTACCAACAGGAAGTCCAAGAATTC  890
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAACACTGGCTGGCTACCAACAGGAAGTCCAAGAATTC  892

seq1: chr1_93657863_93658059
seq2: B6Ng01-335E10.g_73_269

seq1  TCCGGATAATGTCAGTTAGAAAACAATGTTGGGTTGGGCAGTGGTGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGATAATGTCAGTTAGAAAACAATGTTGGGTTGGGCAGTGGTGGCAT  50

seq1  ACATCTTTAACCCCAGCACATGGGAGGCAGAGGCAGGGGAATCTCTGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTAACCCCAGCACATGGGAGGCAGAGGCAGGGGAATCTCTGGGC  100

seq1  TCGAGGCCAGCCTGGACTATAGAGTGAGTTCCAAGACTGACAGGCTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGCCAGCCTGGACTATAGAGTGAGTTCCAAGACTGACAGGCTGTAC  150

seq1  AGAGAAACCCTGTCTTGAAGAAAAGAAAATGAGGAGAGGGGAGGGGA  197
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTTGAAGAAAAGAAAATGAGGAGAGGGGAGGGGA  197