BAC Information

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BAC

Clone NameB6Ng01-335L24
Chromosome1 (Build37)
Map Location 126,809,388 - 126,929,433
singlet/doubletdoublet
Overlap genenone
Upstream geneDpp10, LOC666998
Downstream geneActr3, Slc35f5, Lypd1, E030049G20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335L24.bB6Ng01-335L24.g
ACCGA120877GA120878
length1,1801,158
definitionB6Ng01-335L24.b B6Ng01-335L24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,809,388 - 126,810,560)(126,928,263 - 126,929,433)
sequence
gaattcaatcttaaaaaaacacttataataagacaatactaaaagagagc
acgtggatccatacaccagactaatgcgggaatagggtatgagtatatgg
gaatgccagaactccaggaggtgagcttctgtgaaactctttgcctcatg
aaagcttccaggcctctcagcctgcaagccgacttcataggagtgtgagt
ggcaagagttttctgtgagaacattcttgtccaaactgtctcctttatgg
taatgaaatccaagtttgaatgagagtgatttcttagtgcctgtcaggca
cggtatctggagtaacttgtccaatttactaataactaccagtattcaca
aaggcagctctcaagtctcctagaacttctatccttttaactttctagtt
cttggacagcattaaagtagcctgaggcctgtgagatagctcagtaggta
aagttgcttgctgccaagcctgcggacctaagttcaattcccaggtctca
catggcagagaaagactgacttctgaaaatgatcctctccgtatgcatgg
tgagcacgcacaacacactaaaataaataaatgtaaagtcgcctgacatt
tgctcagcctgtagaaaaggaagaaagaaatgtcagggtctgggaaacag
ctcagtggtgggtagagtgcttggtgtgcaagcctgagtgtctgggctgg
gatctccaatgcccatggaaagaaaagccagggttggctgtgaacaccta
tgaccatggcattggggatggggcaacagagataggtatagtcatagaac
ttgatagccactctttctagacgaaataataaactctagagtcattgagt
ggtgctgtctcaaaacacaaggtagggagggataaagaaggacacctagt
atcatcctctagcttcctcatatgcattcattcatgaatacaaacacaca
tacacacacacacacacacacacacacacacacacacacacactacatac
ttcacacaccccaagaaagaaatgagggggatgaggggaaataaaggaat
gtcaatcaatggacagaaaatgtgataattccggtctaggaaaagaaata
aagggaataaatataatttgaatgaacttagaataattgatattatttta
tgctctgtaggcatggtccatctatctcag

gaattcaactggggataagtagatgatgttataaacagagggagtttact
aagcaagaaagatacttctgagactggccaggtgatatgcatttgctcat
ggccaatgtccatgatgcccccccctctatatatatggtctcaccttagt
cagaaaagaaataaaaaaaaaaaaccaaatctctagaggcccaagggaac
agagctgcaagacttggccacaggggaagcagtcctagaactgatagagc
atctccagatcttggttaccctgcctaaacctcaattactctagcaccca
acctatgcacaggaagaaaccaaatggaccaaggggaagaggcaaactgg
aagcaagtggctgcttattcttcctggccagcagacccctgctgttatca
gaagagaaatggtcaccaaactctctcaggcgacccatctgggagtgact
aactgctgagttaataagacccaaatattccagacaaaaaattccctaga
tttggattacctctctttcaaaatggtatagtcttcatagccaaagtttt
cctaaatttggaaaaggtcctaaatgttaattaaaaacaccattgtgccc
agaggctccaaagctcagggcaggtaacaaggataaatagaaagaaaaag
ttaagttaatatgtccttgagactggtgaaaattaggccaactgcctacc
tgttgctctcatgaaggccagatataccccatattaagacatttatatgg
caaaaattacttttcccttctcaaattcttgcagatcctgcaacagaccc
agagtactaatcatcaaatggtttgagaggcgcacccttgcctttgtctg
agcctacctactagttccagcctggcagtcttacatgggttagagagggt
cctcacttagagcccacagccagtgtgaaaaggcccatagcctataattc
tcacccctactgaagtgaaggtcaccagtgtcccatgggcctaccacctc
cagctaaaggagattacatcagatgacatgggtggtcaccagagcctcac
cccttaagatagagtgatacctatggttgtcatggatgtctgtttgtctc
ccaatggaaaggccatctcatagccagcttgaagtacagaattccactga
gaacccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_126809388_126810560
seq2: B6Ng01-335L24.b_51_1230

seq1  GAATTCAATCTTAAAAAAACACTTATAATAAGACAATACTAAAAGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCTTAAAAAAACACTTATAATAAGACAATACTAAAAGAGAGC  50

seq1  ACGTGGATCCATACACCAGACTAATGCGGGAATAGGGTATGAGTATATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGATCCATACACCAGACTAATGCGGGAATAGGGTATGAGTATATGG  100

seq1  GAATGCCAGAACTCCAGGAGGTGAGCTTCTGTGAAACTCTTTGCCTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCAGAACTCCAGGAGGTGAGCTTCTGTGAAACTCTTTGCCTCATG  150

seq1  AAAGCTTCCAGGCCTCTCAGCCTGCAAGCCGACTTCATAGGAGTGTGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTCCAGGCCTCTCAGCCTGCAAGCCGACTTCATAGGAGTGTGAGT  200

seq1  GGCAAGAGTTTTCTGTGAGAACATTCTTGTCCAAACTGTCTCCTTTATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAGTTTTCTGTGAGAACATTCTTGTCCAAACTGTCTCCTTTATGG  250

seq1  TAATGAAATCCAAGTTTGAATGAGAGTGATTTCTTAGTGCCTGTCAGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATCCAAGTTTGAATGAGAGTGATTTCTTAGTGCCTGTCAGGCA  300

seq1  CGGTATCTGGAGTAACTTGTCCAATTTACTAATAACTACCAGTATTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTATCTGGAGTAACTTGTCCAATTTACTAATAACTACCAGTATTCACA  350

seq1  AAGGCAGCTCTCAAGTCTCCTAGAACTTCTATCCTTTTAACTTTCTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCTCTCAAGTCTCCTAGAACTTCTATCCTTTTAACTTTCTAGTT  400

seq1  CTTGGACAGCATTAAAGTAGCCTGAGGCCTGTGAGATAGCTCAGTAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACAGCATTAAAGTAGCCTGAGGCCTGTGAGATAGCTCAGTAGGTA  450

seq1  AAGTTGCTTGCTGCCAAGCCTGCGGACCTAAGTTCAATTCCCAGGTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTTGCTGCCAAGCCTGCGGACCTAAGTTCAATTCCCAGGTCTCA  500

seq1  CATGGCAGAGAAAGACTGACTTCTGAAAATGATCCTCTCCGTATGCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGAGAAAGACTGACTTCTGAAAATGATCCTCTCCGTATGCATGG  550

seq1  TGAGCACGCACAACACACTAAAATAAATAAATGTAAAGTCGCCTGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACGCACAACACACTAAAATAAATAAATGTAAAGTCGCCTGACATT  600

seq1  TGCTCAGCCTGTAGAAAAGGAAGAAAGAAATGTCAGGGTCTGGGAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCTGTAGAAAAGGAAGAAAGAAATGTCAGGGTCTGGGAAACAG  650

seq1  CTCAGTGGTGGGTAGAGTGCTTGGTGTGCAAGCCTGAGTGTCTGGGCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGTGGGTAGAGTGCTTGGTGTGCAAGCCTGAGTGTCTGGGCTGG  700

seq1  GATCTCCAATGCCCATGGAAAGAAAAGCCAGGGTTGGCTGTGAACACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCAATGCCCATGGAAAGAAAAGCCAGGGTTGGCTGTGAACACCTA  750

seq1  TGACCATGGCATTGGGGATGGGGCAACAGAGATAGGTATAGTCATAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGGCATTGGGGATGGGGCAACAGAGATAGGTATAGTCATAGAAC  800

seq1  TTGATAGCCACTCTTTCTAGACGAAATAATAAACTCTAGAGTCATTGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGCCACTCTTTCTAGACGAAATAATAAACTCTAGAGTCATTGAGT  850

seq1  GGTGCTGTCTCAAAACACAAGGTAGGGAGGGATAAAGAAGGACACCTAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTCTCAAAACACAAGGTAGGGAGGGATAAAGAAGGACACCTAGT  900

seq1  ATCATCCTCTAGCTTCCTCATATGCATTCATTCATGAATACAAACACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCTCTAGCTTCCTCATATGCATTCATTCATGAATACAAACACACA  950

seq1  TACACACACACACACACACACACACACACACACACACACACAC-ACACAC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  TACACACACACACACACACACACACACACACACACACACACACTACATAC  1000

seq1  -TCACACACCCCAAG-AAGAAATGA-GGGGATGAGGGGAAA-AAAGAAAT  1045
       |||||||||||||| ||||||||| ||||||||||||||| |||| |||
seq2  TTCACACACCCCAAGAAAGAAATGAGGGGGATGAGGGGAAATAAAGGAAT  1050

seq1  GTCAATCAAT-GACAG-AAATGTGATTATT-CGGTCTAGG-AAAGAATAA  1091
      |||||||||| ||||| ||||||||| ||| ||||||||| ||||||  |
seq2  GTCAATCAATGGACAGAAAATGTGATAATTCCGGTCTAGGAAAAGAAATA  1100

seq1  AAGGAAATAAAATATATTTGAAATGA--CTAGAATAAATTTTGTATATAT  1139
      |||| ||| ||||||| ||  |||||   ||||||||  ||  |||   |
seq2  AAGGGAAT-AAATATAATTTGAATGAACTTAGAATAA--TTGATATTATT  1147

seq1  TTATG-TCTGGTAGGCATGGTTTCATCTATCTCAG  1173
      ||||| ||| |||||||||| | ||||||||||||
seq2  TTATGCTCT-GTAGGCATGG-TCCATCTATCTCAG  1180


seq1: chr1_126928263_126929433
seq2: B6Ng01-335L24.g_67_1224 (reverse)

seq1  TTGGG-TCTCAGTGGA--TCTGTACTCAAAGCCTGGCTTATGAGAATTTG  47
      ||||| ||||||||||  ||||||||  ||| ||||| |||||||     
seq2  TTGGGTTCTCAGTGGAATTCTGTACTTCAAG-CTGGC-TATGAGA-----  43

seq1  GGGCCTTCTCCATGGGGAGACAAAACAGGACAACCATGACAACCATAGGG  97
       |||||| ||||| ||||||| ||||| |||| |||||||||||||||| 
seq2  TGGCCTT-TCCATTGGGAGAC-AAACA-GACATCCATGACAACCATAGG-  89

seq1  TTATCACTCTTATCCTTAGGGGTTGGAGGCTCTGGTGACCACCCATTGTC  147
       |||||||| |||| | ||||||  |||||||||||||||||||| ||||
seq2  -TATCACTC-TATCTTAAGGGGT--GAGGCTCTGGTGACCACCCA-TGTC  134

seq1  ATCTGATGTAATCTCCTTTAGCTGGAGGTGGTAGGCCCATGGGGACACTG  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCTGATGTAATCTCCTTTAGCTGGAGGTGGTAGGCCCAT-GGGACACTG  183

seq1  GTGACCTTCACTTCAGTAGGGGTGAGAATTATAGGCTATGGGCCTTTTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCTTCACTTCAGTAGGGGTGAGAATTATAGGCTATGGGCCTTTTCA  233

seq1  CACTGGCTGTGGGCTCTAAGTGAGGACCCTCTCTAA-CCATGTAAGACTG  296
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CACTGGCTGTGGGCTCTAAGTGAGGACCCTCTCTAACCCATGTAAGACTG  283

seq1  CCAGGCTGGAACTAGTAGGTAGGCTCAGACAAAGGCAAGGGTGCGCCTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGGAACTAGTAGGTAGGCTCAGACAAAGGCAAGGGTGCGCCTCT  333

seq1  CAAACCATTTGATGATTAGTACTCTGGGTCTGTTGCAGGATCTGCAAGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCATTTGATGATTAGTACTCTGGGTCTGTTGCAGGATCTGCAAGAA  383

seq1  TTTGAGAAGGGAAAAGTAATTTTTGCCATATAAATGTCTTAATATGGGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAGGGAAAAGTAATTTTTGCCATATAAATGTCTTAATATGGGGT  433

seq1  ATATCTGGCCTTCATGAGAGCAACAGGTAGGCAGTTGGCCTAATTTTCAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGGCCTTCATGAGAGCAACAGGTAGGCAGTTGGCCTAATTTTCAC  483

seq1  CAGTCTCAAGGACATATTAACTTAACTTTTTCTTTCTATTTATCCTTGTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAAGGACATATTAACTTAACTTTTTCTTTCTATTTATCCTTGTT  533

seq1  ACCTGCCCTGAGCTTTGGAGCCTCTGGGCACAATGGTGTTTTTAATTAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCCTGAGCTTTGGAGCCTCTGGGCACAATGGTGTTTTTAATTAAC  583

seq1  ATTTAGGACCTTTTCCAAATTTAGGAAAACTTTGGCTATGAAGACTATAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGACCTTTTCCAAATTTAGGAAAACTTTGGCTATGAAGACTATAC  633

seq1  CATTTTGAAAGAGAGGTAATCCAAATCTAGGGAATTTTTTGTCTGGAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGAAAGAGAGGTAATCCAAATCTAGGGAATTTTTTGTCTGGAATA  683

seq1  TTTGGGTCTTATTAACTCAGCAGTTAGTCACTCCCAGATGGGTCGCCTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCTTATTAACTCAGCAGTTAGTCACTCCCAGATGGGTCGCCTGA  733

seq1  GAGAGTTTGGTGACCATTTCTCTTCTGATAACAGCAGGGGTCTGCTGGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTGGTGACCATTTCTCTTCTGATAACAGCAGGGGTCTGCTGGCC  783

seq1  AGGAAGAATAAGCAGCCACTTGCTTCCAGTTTGCCTCTTCCCCTTGGTCC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATAAGCAGCCACTTGCTTCCAGTTTGCCTCTTCCCCTTGGTCC  833

seq1  ATTTGGTTTCTTCCTGTGCATAGGTTGGGTGCTAGAGTAATTGAGGTTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTTTCTTCCTGTGCATAGGTTGGGTGCTAGAGTAATTGAGGTTTA  883

seq1  GGCAGGGTAACCAAGATCTGGAGATGCTCTATCAGTTCTAGGACTGCTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTAACCAAGATCTGGAGATGCTCTATCAGTTCTAGGACTGCTTC  933

seq1  CCCTGTGGCCAAGTCTTGCAGCTCTGTTCCCTTGGGCCTCTAGAGATTTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGCCAAGTCTTGCAGCTCTGTTCCCTTGGGCCTCTAGAGATTTG  983

seq1  GTTTTTTTTTTTTATTTCTTTTCTGACTAAGGTGAGACCATATATATAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTTTATTTCTTTTCTGACTAAGGTGAGACCATATATATAGA  1033

seq1  GGGGGGGGCATCATGGACATTGGCCATGAGCAAATGCATATCACCTGGCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGCATCATGGACATTGGCCATGAGCAAATGCATATCACCTGGCC  1083

seq1  AGTCTCAGAAGTATCTTTCTTGCTTAGTAAACTCCCTCTGTTTATAACAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCAGAAGTATCTTTCTTGCTTAGTAAACTCCCTCTGTTTATAACAT  1133

seq1  CATCTACTTATCCCCAGTTGAATTC  1171
      |||||||||||||||||||||||||
seq2  CATCTACTTATCCCCAGTTGAATTC  1158


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