BAC Information

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BAC

Clone NameB6Ng01-335P03
Chromosome1 (Build37)
Map Location 179,277,734 - 179,420,411
singlet/doubletdoublet
Overlap geneZfp238
Upstream geneCep170, Sdccag8, LOC666235, Akt3
Downstream geneEG631449, LOC100040770, 1700016C15Rik, Adss, EG631584, EG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335P03.bB6Ng01-335P03.g
ACCGA121017GA121018
length6931,188
definitionB6Ng01-335P03.b B6Ng01-335P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(179,419,722 - 179,420,411)(179,277,734 - 179,278,922)
sequence
gaattcagtcctgtcacctgactgctatggaaacacaatctccttcctgt
gcctcccagatagagaacgaattaccagaaccagagatgcgtcccttgga
taaactctggcatgattttttttttttaaactcagagactcttttaaaaa
tgcaaatggtctggttagaaggccacgagactcacttttcctagaacgga
cactgaggcagaagtgggaactttctgttttgtctctatttgacagaggc
tctccagttctctgtgtcgggtgcccagtcttttgaaacaggaagcacat
gggctgctttgcctttctttctccttttaagaaccaactggttccctttt
ttggggtggcgtggaagggaaggaaagcagcagcctgctttccacatggg
gtccagacgtgtattttgtgcatcccactttccagcaaggccacagcgta
atactgaccgtgaagctgacattccaggaaggactgagaaggctgtgccc
tcctcactgtcagggacccttgtctaccagtctggttcactgagagtcta
tcctgagacagccagatgcttaagctggtggcatcaaataaaataatgga
aacggccatttcccaaaatgaaatcatgaaaactacataaacatctctct
ctctctctctctctctctctctctctctctctctctctctgtg
gaattcattttgcaagtggagtacacaaagaggggagacttggaaagttc
tttccccggccccatcttcacccctaccctataacttaagttctcaggag
tttgaggagtctgtgctgacttcctgtgatactgttttctttttaatttt
taaatgtgctttaacttgtgtgtgtttgcttgcacacatgtgcacacaca
tgagtgcaagtattggataggtgtacaagggtaccagaggcgtcagatct
ttctaaagctggagttagaggctgttgtgaactgcccaatgtgggtgctg
ggaacagaactctgatcttctggaaaagaagtgatcttcactgctggtct
ctatctccatctctgccctgctccacctccacttctgctttaagaactgg
aatgttctgccgttctcctaggctggttggaagaacttgtttacttgcaa
aggcccccgtcagcatctttctggccaatgttctgttttctcagctttct
ctaatgtctagccccaggtcctagaatcagtcctgatgatgaaaagatga
ctgtagacttcagcagtattgaatgaaggatgtcaagacttctatagact
caacatgcaacacagtgccatgtctgctaacctttcaggaccaactgtcc
tttgttgtcctatgactcctgacttcttgcatgccctccagccactacat
cctgagctatacctgtgcctctcatccaccaaggccactggcctgttctg
ccacctctttctttaatagtgtcaactaagccctatcctgccctgagccc
cagcctgctggatggatttcttcacaccactgtggtgagttctgttggac
tggcctcgtggggctcactcatgtgtacccgactgagggtatgcctgggt
ttgccaccatatttgatggctttttgcatcctgcctgaaaggccctttgg
gtacagtatctcagcccaatggttaaaccacgaagggctgtcggcaccta
gccaggaatggcgtgttgcaaggaattcagacatcccaccagctttgtct
tcggaccatgtagaatgcctttatatagtatctcatatgtttgaaatggt
ggtgtatgtagatgcttctggtatctatttaattaggaaaggctcattaa
agccatgactgtaattcatgacagcctttttatatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_179419722_179420411
seq2: B6Ng01-335P03.b_48_737 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGT  50

seq1  TTATGTAGTTTTCATGATTTCATTTTGGGAAATGGCCGTTTCCATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGTTTTCATGATTTCATTTTGGGAAATGGCCGTTTCCATTATTT  100

seq1  TATTTGATGCCACCAGCTTAAGCATCTGGCTGTCTCAGGATAGACTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATGCCACCAGCTTAAGCATCTGGCTGTCTCAGGATAGACTCTCA  150

seq1  GTGAACCAGACTGGTAGACAAGGGTCCCTGACAGTGAGGAGGGCACAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCAGACTGGTAGACAAGGGTCCCTGACAGTGAGGAGGGCACAGCC  200

seq1  TTCTCAGTCCTTCCTGGAATGTCAGCTTCACGGTCAGTATTACGCTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCCTTCCTGGAATGTCAGCTTCACGGTCAGTATTACGCTGTGG  250

seq1  CCTTGCTGGAAAGTGGGATGCACAAAATACACGTCTGGACCCCATGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGGAAAGTGGGATGCACAAAATACACGTCTGGACCCCATGTGGA  300

seq1  AAGCAGGCTGCTGCTTTCCTTCCCTTCCACGCCACCCCAAAAAAGGGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCTGCTGCTTTCCTTCCCTTCCACGCCACCCCAAAAAAGGGAAC  350

seq1  CAGTTGGTTCTTAAAAGGAGAAAGAAAGGCAAAGCAGCCCATGTGCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGTTCTTAAAAGGAGAAAGAAAGGCAAAGCAGCCCATGTGCTTCC  400

seq1  TGTTTCAAAAGACTGGGCACCCGACACAGAGAACTGGAGAGCCTCTGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAAAAGACTGGGCACCCGACACAGAGAACTGGAGAGCCTCTGTCA  450

seq1  AATAGAGACAAAACAGAAAGTTCCCACTTCTGCCTCAGTGTCCGTTCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGACAAAACAGAAAGTTCCCACTTCTGCCTCAGTGTCCGTTCTAG  500

seq1  GAAAAGTGAGTCTCGTGGCCTTCTAACCAGACCATTTGCATTTTTAAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGAGTCTCGTGGCCTTCTAACCAGACCATTTGCATTTTTAAAAG  550

seq1  AGTCTCTGAGTTTAAAAAAAAAAAATCATGCCAGAGTTTATCCAAGGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGAGTTTAAAAAAAAAAAATCATGCCAGAGTTTATCCAAGGGAC  600

seq1  GCATCTCTGGTTCTGGTAATTCGTTCTCTATCTGGGAGGCACAGGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTCTGGTTCTGGTAATTCGTTCTCTATCTGGGAGGCACAGGAAGGA  650

seq1  GATTGTGTTTCCATAGCAGTCAGGTGACAGGACTGAATTC  690
      ||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGTTTCCATAGCAGTCAGGTGACAGGACTGAATTC  690

seq1: chr1_179277734_179278922
seq2: B6Ng01-335P03.g_67_1254

seq1  GAATTCATTTTGCAAGTGGAGTACACAAAGAGGGGAGACTTGGAAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGCAAGTGGAGTACACAAAGAGGGGAGACTTGGAAAGTTC  50

seq1  TTTCCCCGGCCCCATCTTCACCCCTACCCTATAACTTAAGTTCTCAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCGGCCCCATCTTCACCCCTACCCTATAACTTAAGTTCTCAGGAG  100

seq1  TTTGAGGAGTCTGTGCTGACTTCCTGTGATACTGTTTTCTTTTTAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAGTCTGTGCTGACTTCCTGTGATACTGTTTTCTTTTTAATTTT  150

seq1  TAAATGTGCTTTAACTTGTGTGTGTTTGCTTGCACACATGTGCACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGCTTTAACTTGTGTGTGTTTGCTTGCACACATGTGCACACACA  200

seq1  TGAGTGCAAGTATTGGATAGGTGTACAAGGGTACCAGAGGCGTCAGATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCAAGTATTGGATAGGTGTACAAGGGTACCAGAGGCGTCAGATCT  250

seq1  TTCTAAAGCTGGAGTTAGAGGCTGTTGTGAACTGCCCAATGTGGGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGCTGGAGTTAGAGGCTGTTGTGAACTGCCCAATGTGGGTGCTG  300

seq1  GGAACAGAACTCTGATCTTCTGGAAAAGAAGTGATCTTCACTGCTGGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAACTCTGATCTTCTGGAAAAGAAGTGATCTTCACTGCTGGTCT  350

seq1  CTATCTCCATCTCTGCCCTGCTCCACCTCCACTTCTGCTTTAAGAACTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCCATCTCTGCCCTGCTCCACCTCCACTTCTGCTTTAAGAACTGG  400

seq1  AATGTTCTGCCGTTCTCCTAGGCTGGTTGGAAGAACTTGTTTACTTGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTCTGCCGTTCTCCTAGGCTGGTTGGAAGAACTTGTTTACTTGCAA  450

seq1  AGGCCCCCGTCAGCATCTTTCTGGCCAATGTTCTGTTTTCTCAGCTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCCGTCAGCATCTTTCTGGCCAATGTTCTGTTTTCTCAGCTTTCT  500

seq1  CTAATGTCTAGCCCCAGGTCCTAGAATCAGTCCTGATGATGAAAAGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTCTAGCCCCAGGTCCTAGAATCAGTCCTGATGATGAAAAGATGA  550

seq1  CTGTAGACTTCAGCAGTATTGAATGAAGGATGTCAAGACTTCTATAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGACTTCAGCAGTATTGAATGAAGGATGTCAAGACTTCTATAGACT  600

seq1  CAACATGCAACACAGTGCCATGTCTGCTAACCTTTCAGGACCAACTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGCAACACAGTGCCATGTCTGCTAACCTTTCAGGACCAACTGTCC  650

seq1  TTTGTTGTCCTATGACTCCTGACTTCTTGCATGCCCTCCAGCCACTACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTCCTATGACTCCTGACTTCTTGCATGCCCTCCAGCCACTACAT  700

seq1  CCTGAGCTATACCTGTGCCTCTCATCCACCAAGGCCACTGGCCTGTTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTATACCTGTGCCTCTCATCCACCAAGGCCACTGGCCTGTTCTG  750

seq1  CCACCTCTTTCTTTAATAGTGTCAACTAAGCCCTATCCTGCCCTGAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTTTCTTTAATAGTGTCAACTAAGCCCTATCCTGCCCTGAGCCC  800

seq1  CAGCCTGCTGGATGGATTTCTTCACACCACTGTGGTGAGTTCTGTTGGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCTGGATGGATTTCTTCACACCACTGTGGTGAGTTCTGTTGGAC  850

seq1  TGGCCTCGTGGGGCTCACTCATGTGTACCCGACTGAGGGTATGCCTGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGTGGGGCTCACTCATGTGTACCCGACTGAGGGTATGCCTGGGT  900

seq1  TTGCCACCATA-TTGATGGCTTTTTGCATCCTGCCTGAAAGGCCCTTT-G  948
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  TTGCCACCATATTTGATGGCTTTTTGCATCCTGCCTGAAAGGCCCTTTGG  950

seq1  GTACAGTATCTCAAGCCAATGGTTAAACCACG-AGGGCTGTCGGCACCTA  997
      |||||||||||||  ||||||||||||||||| |||||||||||||||||
seq2  GTACAGTATCTCAGCCCAATGGTTAAACCACGAAGGGCTGTCGGCACCTA  1000

seq1  GCCAGGAATGGCGTGTTGCAAGGAATTCAGACATCCCACCAAGCCTTGTC  1047
      |||||||||||||||||||||||||||||||||||||||| ||| |||||
seq2  GCCAGGAATGGCGTGTTGCAAGGAATTCAGACATCCCACC-AGCTTTGTC  1049

seq1  TCGGGAACCCAATGTAGAATG-CTTTATATAAGTATTCTCATTATGTTTT  1096
      |  |||   | |||||||||| |||||||| |||| ||||| |||| |||
seq2  TTCGGA---CCATGTAGAATGCCTTTATAT-AGTA-TCTCA-TATG-TTT  1092

seq1  GAAAATGT-GTGTATGTAGATGCTTCT-GTATCTAATTTAATTAGAGAAG  1144
      ||||  || |||||||||||||||||| |||||| ||||||||||  |||
seq2  GAAATGGTGGTGTATGTAGATGCTTCTGGTATCT-ATTTAATTAGGAAAG  1141

seq1  GCTCTATTTAAAAGCATGACTG-AATTCATGACAGC---TTTTTATCAC  1189
      ||||   |||||  |||||||| |||||||||||||   ||| ||||||
seq2  GCTC--ATTAAAGCCATGACTGTAATTCATGACAGCCTTTTTATATCAC  1188