BAC Information

Click to search

BAC

Clone NameB6Ng01-336A20
Chromosome1 (Build37)
Map Location 170,609,415 - 170,610,614
singlet/doubletsinglet
Overlap genenone
Upstream geneLmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336A20.bB6Ng01-336A20.g
ACCGA121097GA121098
length1,202868
definitionB6Ng01-336A20.b B6Ng01-336A20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaagaggtagagaaatatggtcttcttgatgttgatggacccat
gaaatgaagtggcctattctatcttttcaatacctgcccatcagctggca
tgggttagtgccaaatgatttaatgccatgtctagtaagccacacaaatt
gtccattctagtaacacaagagagccaatcacaaggtgaaaggttttcta
gcttttcagaatgggactctaagggtgcctgtggtttagtaggaaaaaaa
aactacagacttaaacaacctgggtttgaatgtggttctacctcatattc
taagcacttcaactctgtctttccatttatcagctaagtggagtaaccat
gcttattttgctacactgtgaaaataaggaaatgtatccacttatacatt
tatgctttccttcatccacaactatctgatccatgtaggaaaagccatga
tgtcttgtgatagtttgaatttattaaggcgtaaatgtaagatattatat
tatcctcaagtgtcttcaaagtgctcctataaaaataagtattatccatt
tttattaatacagctctaggaaatgtgattgtccaaaaattcaatattcg
ataactaactagctcaccgagccatgatgataaagcagaattcccaatct
tcacataatttcaagtgaactacatcttaaaaataatacagaaatcattt
tatcctttatgatcttcatatcattttactgtgaagagctcaaattctgt
aggttttcccattagtaatcattatcaccatttgcctaaggcagtaatag
tcttgacacaactctttcctaatcactgaatagtacccaaaactttttaa
agagagatgggatgtgaaaataaaaagattttgagaggcagctataaatt
atactgtacgctggaagtgaggcaagagcaataattcccagccattggag
aattaataatagtcctctctgttcctgccttaagacttctctacacatga
gaccagggggacatcaattagtgaaaatgtaatgctaagtaaagtaagga
aaatttcatgtcccttttcttatttgagagccaataattattatctaagt
cactaaatcttaaacaagtttcttataacctctttaacatgaatgctata
atttcatctgcctccaacctgttgtaaacctcagaatataatccaatgtg
tg

gaattcactaatatcagaaaataacatctgggacattgctaccagttatg
gagaaatgcagtggattatcagagatcatggtagacaataactcaccaaa
atgtgaataaggtagataaaatggacaatctaagagacacaaaacctacc
gatagagaatcacaagagaaataaatttgaacagatgtatgactaaggag
attaaagctataagaaaacatctccaaatcacaaataactcacacaaaat
gtactcactgataagtggatattagctcagaaacttagactacccaagat
acaagatacaatttgcaaaacacatgaaactcaagaagaacgaagaccaa
agtgtggacacttggccccttcttagaattgggaacaaaacacccataga
aggagttacagagacaaagtttggagctgagacgaaaagatggaccatct
agagactaccatatccggggatccatcccataatcagcttccaaacactg
acaccattgcatacactagcaagattttactgaaaggacccagatatagc
tgtctcttgtgagactacactggggcctagcaaacacagaagtggaggct
cgcagtcagctattggatggatcacagggcccccaatggaggagctagag
aaagtacccaaggagctaaagggatctgcaaccctataggtggaacaaca
ttatgaactaagcagtaccccggagctcttgactctagctgcatatgtat
caaaagatggcctagtcggccatcactggaaagagaggcccattggacat
gcaaactttatatgccccaatacaggggaacgccagggccaaaaaggggg
agtgggtggggtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_170609415_170610614
seq2: B6Ng01-336A20.b_50_1251 (reverse)

seq1  CACACATT-GAT--TATTTTGAGTTTTACAACAGGTTTGGGAGGCCAGAT  47
      |||||||| |||  |||| |||| |||||||||||||  ||||| |||||
seq2  CACACATTGGATTATATTCTGAGGTTTACAACAGGTT--GGAGG-CAGAT  47

seq1  GAATATTATAGCATTCATG-TAAAGAGTTTATAGGAAACT--GTTAAGAT  94
      ||| ||||||||||||||| ||||||| ||||| ||||||   |||||||
seq2  GAA-ATTATAGCATTCATGTTAAAGAGGTTATAAGAAACTTGTTTAAGAT  96

seq1  TAAGTGACTTAGAT-ATAATTATTTGGCTCTCAAATAGAAAAGGGGACAT  143
      | |||||||||||| ||||||| ||||||||||||||  ||| |||||||
seq2  TTAGTGACTTAGATAATAATTA-TTGGCTCTCAAATAAGAAAAGGGACAT  145

seq1  GAAATTTTCCTTACTTTACTTAGCATTACATTTTCACTAATTGATGTCCC  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTCCTTACTTTACTTAGCATTACATTTTCACTAATTGATGTCCC  195

seq1  CCTGGTCTCATGTGTAGAGAAGTCTTAAGGCAGGAACAGAGAGGACTATT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTCATGTGTAGAGAAGTCTTAAGGCAGGAACAGAGAGGACTATT  245

seq1  ATTAATTCTCCAATGGCTGGGAATTATTGCTCTTGCCTCACTTCCAGCGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTCTCCAATGGCTGGGAATTATTGCTCTTGCCTCACTTCCAGCGT  295

seq1  ACAGTATAATTTATAGCTGCCTCTCAAAATCTTTTTATTTTCACATCCCA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATAATTTATAGCTGCCTCTCAAAATCTTTTTATTTTCACATCCCA  345

seq1  TCTCTCTTTAAAAAGTTTTGGGTACTATTCAGTGATTAGGAAAGAGTTGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTAAAAAGTTTTGGGTACTATTCAGTGATTAGGAAAGAGTTGT  395

seq1  GTCAAGACTATTACTGCCTTAGGCAAATGGTGATAATGATTACTAATGGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGACTATTACTGCCTTAGGCAAATGGTGATAATGATTACTAATGGG  445

seq1  AAAACCTACAGAATTTGAGCTCTTCACAGTAAAATGATATGAAGATCATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTACAGAATTTGAGCTCTTCACAGTAAAATGATATGAAGATCATA  495

seq1  AAGGATAAAATGATTTCTGTATTATTTTTAAGATGTAGTTCACTTGAAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAAATGATTTCTGTATTATTTTTAAGATGTAGTTCACTTGAAAT  545

seq1  TATGTGAAGATTGGGAATTCTGCTTTATCATCATGGCTCGGTGAGCTAGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAAGATTGGGAATTCTGCTTTATCATCATGGCTCGGTGAGCTAGT  595

seq1  TAGTTATCGAATATTGAATTTTTGGACAATCACATTTCCTAGAGCTGTAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATCGAATATTGAATTTTTGGACAATCACATTTCCTAGAGCTGTAT  645

seq1  TAATAAAAATGGATAATACTTATTTTTATAGGAGCACTTTGAAGACACTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATGGATAATACTTATTTTTATAGGAGCACTTTGAAGACACTT  695

seq1  GAGGATAATATAATATCTTACATTTACGCCTTAATAAATTCAAACTATCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATAATATAATATCTTACATTTACGCCTTAATAAATTCAAACTATCA  745

seq1  CAAGACATCATGGCTTTTCCTACATGGATCAGATAGTTGTGGATGAAGGA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATCATGGCTTTTCCTACATGGATCAGATAGTTGTGGATGAAGGA  795

seq1  AAGCATAAATGTATAAGTGGATACATTTCCTTATTTTCACAGTGTAGCAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAATGTATAAGTGGATACATTTCCTTATTTTCACAGTGTAGCAA  845

seq1  AATAAGCATGGTTACTCCACTTAGCTGATAAATGGAAAGACAGAGTTGAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCATGGTTACTCCACTTAGCTGATAAATGGAAAGACAGAGTTGAA  895

seq1  GTGCTTAGAATATGAGGTAGAACCACATTCAAACCCAGGTTGTTTAAGTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTAGAATATGAGGTAGAACCACATTCAAACCCAGGTTGTTTAAGTC  945

seq1  TGTAGTTTTTTTTTCCTACTAAACCACAGGCACCCTTAGAGTCCCATTCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTTTTTTCCTACTAAACCACAGGCACCCTTAGAGTCCCATTCT  995

seq1  GAAAAGCTAGAAAACCTTTCACCTTGTGATTGGCTCTCTTGTGTTACTAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTAGAAAACCTTTCACCTTGTGATTGGCTCTCTTGTGTTACTAG  1045

seq1  AATGGACAATTTGTGTGGCTTACTAGACATGGCATTAAATCATTTGGCAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGACAATTTGTGTGGCTTACTAGACATGGCATTAAATCATTTGGCAC  1095

seq1  TAACCCATGCCAGCTGATGGGCAGGTATTGAAAAGATAGAATAGGCCACT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCATGCCAGCTGATGGGCAGGTATTGAAAAGATAGAATAGGCCACT  1145

seq1  TCATTTCATGGGTCCATCAACATCAAGAAGACCATATTTCTCTACCTCTT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATGGGTCCATCAACATCAAGAAGACCATATTTCTCTACCTCTT  1195

seq1  AGAATTC  1200
      |||||||
seq2  AGAATTC  1202


| Home | SequenceCutter | Blast | Download |