BAC Information

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BAC

Clone NameB6Ng01-337C17
Chromosome1 (Build37)
Map Location 189,037,930 - 189,185,425
singlet/doubletdoublet
Overlap geneSpata17, Gpatch2
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337C17.bB6Ng01-337C17.g
ACCGA121878GA121879
length1,145953
definitionB6Ng01-337C17.b B6Ng01-337C17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,184,265 - 189,185,425)(189,037,930 - 189,038,886)
sequence
gaattcactaatgcaggttgagattttctttgattgtatcagtgctgtcc
atcaaagagatgactttctgatttcagccccaaacctagcctcctctgct
gtatttgcgtttaaacaaaatacagtttccatgctctagacaggaacttt
gaaagaaaccccctcctagagttcctgtctgcatttctcttggggctgta
gagctctcctgtgtagccactatgcagaaaacggcattattcactctgca
atcttcttagtccccgcagcctttcatcatgtcttgttccaattctccaa
attgtatatagaatgaaggtcatggcccagaccccagctctttaaaaaag
agccaccctttcttcattgttctgggaaatctgcttgggctcctggccaa
ggccatactgcccagttagtattcttttgcttctgtaccaagcaaccagc
atgtcatgaggtgtgtatgttaggggctactgtcagatggtcactgttta
gatcctatcaatttgaaatttattttaactgcacacgagctgagatagga
tgcttgtacagtgtactgtattttaaggggaatgttaggcataagttcca
gggtagactagtataaaaaaattttaaaaacttttgatatcatacactat
agacagatttagaatattattttccataacaagctttccttctatttaat
ttgaattgctaatacgctacctgttaacaatatagcattctatatcttta
ggtattacgtaatctggactctttggtcatttaagaatgagagtttttct
aattatatttcattaaggaagcatcatctagtctttataagcaggtatga
ccaatatgaggtagtgacattctgtctgtgaggttcactggaaaacagtg
cacgaggtccccagcacagaagcatcacacacaacaattctttgtcctgt
agagctacttcttttgtaatcttgactctggcacctaagtcacttgagtt
tccaaactagtgtgggtgatcagatgtgactcagggcttccaaccctggc
aatgcttctctgtaatgtgtgaacctgctctttgctgctgctcagattct
ttgcgatcctttgaaggagggaggtgacctctatgacaggtcgga

gaattccattgcgcaatggctatgcttatttaaagatgattaattggaag
cttcggtaatgtgattattcactaaataactgttgtagctattccatttc
aggaagcaagacagtacaggctgaaataatggttaaactaagaggcaaga
aaaaaagcaacattggcctacttctagcaagaaaatccatagtttctcac
aaaagttacaagattgaattatcactgtagttgctagaggttcacgatga
aatagcaaaactatagttgagatgtatgttaggataagaatagcttatca
ggactttctcacactgacttggtcactgctggtctgctataatttatcac
actttttgtaatgtactttttgtgattccttctaagttttgaaaaccact
gggccattgcttctagtttcaatgtccccttttcatggagaggaagttta
ggtgtggggggtgagaatgctgccttagctcttgcccatttactgtacca
attatcttgtcacaatggtatagaaacttcacttggacaaatgaatcaca
gatgaattgaattctgtgatgtttgtgagattaagtgaagctcaaattcc
catttggacattgatattctgaattcatggaactacctgggtaagcctgg
ttaacgttaattaggccactagacctacattgtataaaataggtttcacc
aaaccaaatttctcagtgattattttaaaatgtcaaaaaaaaaaagcccc
acaaaacaaacagtattttgaggaagactcccaaatgtttgcccagggca
gcccttgaattttctgtgttgcccaggctggactggactcacagtcatcc
tcctgcctgttccccagtcggggttacttcatttagggcggcccttaata
ttcctctattctgggatcttcataagaataataaactattattgacttgt
caa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189184265_189185425
seq2: B6Ng01-337C17.b_48_1192 (reverse)

seq1  TCCGACCTGTCACTAGGAGGCTCCACCTCCTTCCTTCAAAAGGGGGACGC  50
      |||||||||||| || ||||   ||||||| |||||||||    |||   
seq2  TCCGACCTGTCA-TA-GAGG--TCACCTCCCTCCTTCAAA----GGATCG  42

seq1  CAAAGAA-CTGAAGCCAGCCAGCCAAAGAGCAGGT---CACATTACAGAG  96
      ||||||| ||||   ||| ||| ||||||||||||   ||||||||||||
seq2  CAAAGAATCTGA--GCAG-CAG-CAAAGAGCAGGTTCACACATTACAGAG  88

seq1  AAGCAATGGCCAGGGGTTGGAAGCCCTGAGTTCACATCTGATCCAACCCA  146
      |||| || |||| ||||||||||||||||| ||||||||||||  |||||
seq2  AAGC-ATTGCCA-GGGTTGGAAGCCCTGAG-TCACATCTGATC--ACCCA  133

seq1  CACTAGTTTGGGAAACTCAAGTGACTTAGGGTGCCAGAGTCAAGATTTAC  196
      ||||||||| |||||||||||||||||| |||||||||||||||| ||||
seq2  CACTAGTTT-GGAAACTCAAGTGACTTA-GGTGCCAGAGTCAAGA-TTAC  180

seq1  AAAAGAAGTAGCTCTACAGGACAAAGAATTGTTGTGTGTGATGCTTCTGT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTAGCTCTACAGGACAAAGAATTGTTGTGTGTGATGCTTCTGT  230

seq1  GCTGGGGACCTCGTGCACTGTTTTCCAGTGAACCTCACAGACAGAATGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGGACCTCGTGCACTGTTTTCCAGTGAACCTCACAGACAGAATGTC  280

seq1  ACTACCTCATATTGGTCATACCTGCTTATAAAGACTAGATGATGCTTCCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTCATATTGGTCATACCTGCTTATAAAGACTAGATGATGCTTCCT  330

seq1  TAATGAAATATAATTAGAAAAACTCTCATTCTTAAATGACCAAAGAGTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAATATAATTAGAAAAACTCTCATTCTTAAATGACCAAAGAGTCC  380

seq1  AGATTACGTAATACCTAAAGATATAGAATGCTATATTGTTAACAGGTAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACGTAATACCTAAAGATATAGAATGCTATATTGTTAACAGGTAGC  430

seq1  GTATTAGCAATTCAAATTAAATAGAAGGAAAGCTTGTTATGGAAAATAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGCAATTCAAATTAAATAGAAGGAAAGCTTGTTATGGAAAATAAT  480

seq1  ATTCTAAATCTGTCTATAGTGTATGATATCAAAAGTTTTTAAAATTTTTT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATCTGTCTATAGTGTATGATATCAAAAGTTTTTAAAATTTTTT  530

seq1  TATACTAGTCTACCCTGGAACTTATGCCTAACATTCCCCTTAAAATACAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTAGTCTACCCTGGAACTTATGCCTAACATTCCCCTTAAAATACAG  580

seq1  TACACTGTACAAGCATCCTATCTCAGCTCGTGTGCAGTTAAAATAAATTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTGTACAAGCATCCTATCTCAGCTCGTGTGCAGTTAAAATAAATTT  630

seq1  CAAATTGATAGGATCTAAACAGTGACCATCTGACAGTAGCCCCTAACATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGATAGGATCTAAACAGTGACCATCTGACAGTAGCCCCTAACATA  680

seq1  CACACCTCATGACATGCTGGTTGCTTGGTACAGAAGCAAAAGAATACTAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTCATGACATGCTGGTTGCTTGGTACAGAAGCAAAAGAATACTAA  730

seq1  CTGGGCAGTATGGCCTTGGCCAGGAGCCCAAGCAGATTTCCCAGAACAAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAGTATGGCCTTGGCCAGGAGCCCAAGCAGATTTCCCAGAACAAT  780

seq1  GAAGAAAGGGTGGCTCTTTTTTAAAGAGCTGGGGTCTGGGCCATGACCTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGGTGGCTCTTTTTTAAAGAGCTGGGGTCTGGGCCATGACCTT  830

seq1  CATTCTATATACAATTTGGAGAATTGGAACAAGACATGATGAAAGGCTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTATATACAATTTGGAGAATTGGAACAAGACATGATGAAAGGCTGC  880

seq1  GGGGACTAAGAAGATTGCAGAGTGAATAATGCCGTTTTCTGCATAGTGGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTAAGAAGATTGCAGAGTGAATAATGCCGTTTTCTGCATAGTGGC  930

seq1  TACACAGGAGAGCTCTACAGCCCCAAGAGAAATGCAGACAGGAACTCTAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGGAGAGCTCTACAGCCCCAAGAGAAATGCAGACAGGAACTCTAG  980

seq1  GAGGGGGTTTCTTTCAAAGTTCCTGTCTAGAGCATGGAAACTGTATTTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTTTCTTTCAAAGTTCCTGTCTAGAGCATGGAAACTGTATTTTG  1030

seq1  TTTAAACGCAAATACAGCAGAGGAGGCTAGGTTTGGGGCTGAAATCAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACGCAAATACAGCAGAGGAGGCTAGGTTTGGGGCTGAAATCAGAA  1080

seq1  AGTCATCTCTTTGATGGACAGCACTGATACAATCAAAGAAAATCTCAACC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTCTTTGATGGACAGCACTGATACAATCAAAGAAAATCTCAACC  1130

seq1  TGCATTAGTGAATTC  1161
      |||||||||||||||
seq2  TGCATTAGTGAATTC  1145


seq1: chr1_189037930_189038886
seq2: B6Ng01-337C17.g_64_1016

seq1  GAATTCCATTGCGCAATGGCTATGCTTATTTAAAGATGATTAATTGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTGCGCAATGGCTATGCTTATTTAAAGATGATTAATTGGAAG  50

seq1  CTTCGGTAATGTGATTATTCACTAAATAACTGTTGTAGCTATTCCATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGTAATGTGATTATTCACTAAATAACTGTTGTAGCTATTCCATTTC  100

seq1  AGGAAGCAAGACAGTACAGGCTGAAATAATGGTTAAACTAAGAGGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCAAGACAGTACAGGCTGAAATAATGGTTAAACTAAGAGGCAAGA  150

seq1  AAAAAAGCAACATTGGCCTACTTCTAGCAAGAAAATCCATAGTTTCTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCAACATTGGCCTACTTCTAGCAAGAAAATCCATAGTTTCTCAC  200

seq1  AAAAGTTACAAGATTGAATTATCACTGTAGTTGCTAGAGGTTCACGATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTACAAGATTGAATTATCACTGTAGTTGCTAGAGGTTCACGATGA  250

seq1  AATAGCAAAACTATAGTTGAGATGTATGTTAGGATAAGAATAGCTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAAAACTATAGTTGAGATGTATGTTAGGATAAGAATAGCTTATCA  300

seq1  GGACTTTCTCACACTGACTTGGTCACTGCTGGTCTGCTATAATTTATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTCTCACACTGACTTGGTCACTGCTGGTCTGCTATAATTTATCAC  350

seq1  ACTTTTTGTAATGTACTTTTTGTGATTCCTTCTAAGTTTTGAAAACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGTAATGTACTTTTTGTGATTCCTTCTAAGTTTTGAAAACCACT  400

seq1  GGGCCATTGCTTCTAGTTTCAATGTCCCCTTTTCATGGAGAGGAAGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATTGCTTCTAGTTTCAATGTCCCCTTTTCATGGAGAGGAAGTTTA  450

seq1  GGTGTGGGGGGTGAGAATGCTGCCTTAGCTCTTGCCCATTTACTGTACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGGGGGTGAGAATGCTGCCTTAGCTCTTGCCCATTTACTGTACCA  500

seq1  ATTATCTTGTCACAATGGTATAGAAACTTCACTTGGACAAATGAATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTGTCACAATGGTATAGAAACTTCACTTGGACAAATGAATCACA  550

seq1  GATGAATTGAATTCTGTGATGTTTGTGAGATTAAGTGAAGCTCAAATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTGAATTCTGTGATGTTTGTGAGATTAAGTGAAGCTCAAATTCC  600

seq1  CATTTGGACATTGATATTCTGAATTCATGGAACTACCTGGGTAAGCCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGACATTGATATTCTGAATTCATGGAACTACCTGGGTAAGCCTGG  650

seq1  TTAACGTTAATTAGGCCACTAGACCTACATTGTATAAAATAGGTTTCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGTTAATTAGGCCACTAGACCTACATTGTATAAAATAGGTTTCACC  700

seq1  AAACCAAATTTCTCAGTGATTATTTTAAAATGTCGAAAAAAAAAAAGCCC  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAACCAAATTTCTCAGTGATTATTTTAAAATGTC-AAAAAAAAAAAGCCC  749

seq1  CACAAAACAAAACAGTATTTTGAGGAAGACTCCCAAATG-TTGCCCAGGG  799
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  CACAAAAC-AAACAGTATTTTGAGGAAGACTCCCAAATGTTTGCCCAGGG  798

seq1  CAG-CCTTGAATTTTCTGTGTTGCCCAGGCTGGACTGGACTCACAGTCAT  848
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTGAATTTTCTGTGTTGCCCAGGCTGGACTGGACTCACAGTCAT  848

seq1  CCTCCTGCCTGTTTCCCCAGTCGGGGTTTACTTCATTTAGGGCGGCCCTT  898
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  CCTCCTGCCTG-TTCCCCAGTCGGGG-TTACTTCATTTAGGGCGGCCCTT  896

seq1  AATAATTCTCTATTCTGGGATCTTCCTTAGAGAATATTAACTTATTAATG  948
      |||| | |||||||||||||||||| |   |||||| |||  ||||| ||
seq2  AATATTCCTCTATTCTGGGATCTTCAT--AAGAATAATAAACTATTATTG  944

seq1  ACTTGTCAA  957
      |||||||||
seq2  ACTTGTCAA  953


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