BAC Information

Click to search

BAC

Clone NameB6Ng01-337M03
Chromosome1 (Build37)
Map Location 23,808,290 - 23,809,240
singlet/doubletsinglet
Overlap geneB3gat2
Upstream geneRims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782
Downstream geneSmap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337M03.bB6Ng01-337M03.g
ACCGA122282GA122283
length953928
definitionB6Ng01-337M03.b B6Ng01-337M03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcttgtattttgaaaatgtaatgtttctgccttgctgaggctc
caatacttgcatatgctaaacaagtatgccctgtgctaatctccagtcct
gtgaattttctcaaagataccaattttccatcctgtggatgtacacatag
cagtgtgattgctgggtaatagtggttctgattttagggttttttttttt
ttgaggcatctccacactgttttccataatggctgttctgatttgcattc
ctgttaactgctagcaagtttcctcttttcctctatctattttttttccc
aacacagatgtccatttgttcgtgtcttagatattgaaaacactgttctt
tcccttgctcatcctgctgccatttcaaaggtgagcagagctatttctaa
attctccagtctcctctgtttgtttgtatatttttccttacactaattcc
tcattgatgtgattactgtggctttctacgaagcagagcccagagagccc
ctaatatgtagtgccagtgattcacggtgtagccacagattcacaacctt
aagtatttaatataattaagtcacactgatcatgtctaagcagtttcctt
tgttttaaaactcaaaggaggaccgtgatatagctgtcccttgtgagact
aggccggggcctagcaaacacagaagtggatgctcacagtcaactattgg
atggatcacagggcccccaatggaggagctagagaaagtatccaaggagc
taaagggatctgcaaccctatcggtggaacaacattatgaactaaccagt
accccagagctcttgactctagctgcatatgtatcaaaagatggcctagt
cggccatcactgggaaagagaggcccattggtcaggcaaactttatatgc
cccagtacaggggaacgccagggccagaaaatgggaatggggtggggggg
ggg
gaattccagtgagagggtgttggatctctgggaactggagttatggacgt
tgtgagctgacacatggttgttgggaatttggaagagcagcccaggcttt
ttgtttgtttgtttgtttgtgttttcgagacagggtttctctgtgtagcc
ctggctgtcctggaactcactctgtagaccaggctagccttaaactcaga
aatccacctgcctctgcctcccgagtgctgggattaaaggtgtgtgccac
ctcgcctggtgcagcccaggcttttaaccactgagcaatctctccagctt
caaaaccgacttcactattaatctagtcacacattctgctgcaagcctct
ataaaggacacgaaagaaggttggaaggttgctttctttgcttgttcttt
ttttttttttttttgaatgcatttaattttttttattagatattttcttc
atttacatttcaaatgctatcccctttcctagtttcctttctgaaagacc
cctatactctttgcttgttcttactctcacggtaagtccattccttcact
gccttctctttccagattctggcatatactgaaggccagctaagacattc
agccctgtcaactgaacaactactagattattggggcctcctagtatgca
gccaagttggaccatagcctataagctaatacatcctatatcagtctatt
aataaataaataaagatagatagatagatagatagatagatagatagata
gatagatagctggctggctggttgtagttaggattctctagaggaaccct
aactaatgtacctgggttgtttggggggttcccaaagagcctctttggcc
aacaacttgattaggtataatccattctttgtactggaaggttcatttgg
tgatgagagatgtgtagtctgtctcttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23808290_23809240
seq2: B6Ng01-337M03.b_46_998

seq1  GAATTCTTCTTGTATTTTGAAAATGTAATGTTTCTGCCTTGCTGAGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGTATTTTGAAAATGTAATGTTTCTGCCTTGCTGAGGCTC  50

seq1  CAATACTTGCATATGCTAAACAAGTATGCCCTGTGCTAATCTCCAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTTGCATATGCTAAACAAGTATGCCCTGTGCTAATCTCCAGTCCT  100

seq1  GTGAATTTTCTCAAAGATACCAATTTTCCATCCTGTGGATGTACACATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTTTCTCAAAGATACCAATTTTCCATCCTGTGGATGTACACATAG  150

seq1  CAGTGTGATTGCTGGGTAATAGTGGTTCTGATTTTAGGGTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGATTGCTGGGTAATAGTGGTTCTGATTTTAGGGTTTTTTTTTTT  200

seq1  TTGAGGCATCTCCACACTGTTTTCCATAATGGCTGTTCTGATTTGCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCATCTCCACACTGTTTTCCATAATGGCTGTTCTGATTTGCATTC  250

seq1  CTGTTAACTGCTAGCAAGTTTCCTCTTTTCCTCTATCTATTTTTTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACTGCTAGCAAGTTTCCTCTTTTCCTCTATCTATTTTTTTTCCC  300

seq1  AACACAGATGTCCATTTGTTCGTGTCTTAGATATTGAAAACACTGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGATGTCCATTTGTTCGTGTCTTAGATATTGAAAACACTGTTCTT  350

seq1  TCCCTTGCTCATCCTGCTGCCATTTCAAAGGTGAGCAGAGCTATTTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGCTCATCCTGCTGCCATTTCAAAGGTGAGCAGAGCTATTTCTAA  400

seq1  ATTCTCCAGTCTCCTCTGTTTGTTTGTATATTTTTCCTTACACTAATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCAGTCTCCTCTGTTTGTTTGTATATTTTTCCTTACACTAATTCC  450

seq1  TCATTGATGTGATTACTGTGGCTTTCTACGAAGCAGAGCCCAGAGAGCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATGTGATTACTGTGGCTTTCTACGAAGCAGAGCCCAGAGAGCCC  500

seq1  CTAATATGTAGTGCCAGTGATTCACGGTGTAGCCACAGATTCACAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATATGTAGTGCCAGTGATTCACGGTGTAGCCACAGATTCACAACCTT  550

seq1  AAGTATTTAATATAATTAAGTCACACTGATCATGTCTAAGCAGTTTCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTAATATAATTAAGTCACACTGATCATGTCTAAGCAGTTTCCTT  600

seq1  TGTTTTAAAACTCAAAGGAGGACCGTGATATAGCTGTCCCTTGTGAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAACTCAAAGGAGGACCGTGATATAGCTGTCCCTTGTGAGACT  650

seq1  AGGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAACTATTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAACTATTGG  700

seq1  ATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGC  750

seq1  TAAAGGGATCTGCAACCCTATCGGTGGAACAACATTATGAACTAACCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGATCTGCAACCCTATCGGTGGAACAACATTATGAACTAACCAGT  800

seq1  ACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT  850

seq1  CGGCCATCACT-GGAAAGAGAGGCCCATTGGTCAGGCAAACTTTATATGC  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATCACTGGGAAAGAGAGGCCCATTGGTCAGGCAAACTTTATATGC  900

seq1  CCCAGTACAGGGGAACGCCAGGGCCAGAAAATGGGAAT-GGGTGGGGGGG  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCAGTACAGGGGAACGCCAGGGCCAGAAAATGGGAATGGGGTGGGGGGG  950

seq1  GAG  951
      | |
seq2  GGG  953