BAC Information

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BAC

Clone NameB6Ng01-338F04
Chromosome1 (Build37)
Map Location 52,888,042 - 52,889,216
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1
Downstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338F04.bB6Ng01-338F04.g
ACCGA122663GA122664
length1,2511,168
definitionB6Ng01-338F04.b B6Ng01-338F04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaaactttaaaaatccaaagtttcttaactgtaaactcctata
aacaactaaaacaaaaacaagttacaagcttccaacatataatggcatag
aataaacattcttattccaaaagggaagactcagagcataagaagaataa
aaataccaaagcagaactgaattccaacagggcaagcataaaagcctaga
gctctttctttatacagcatattatagctctggagcttgtgatggtatca
gtgtgattccaaaaggatttggaagccctattcctcctcccttgctactt
acagcacacacagcttttctcttaggtccactctactccacacttgcagc
tctccttggcagaccttccatggacctggcatctctgacacttaggtgtc
ctcatcaatagcatatcagggcctctcttcacggtttgcaactctgtcac
acggtgcctggccttagtggatccccaggatctcctcaatcttgcatctt
ccatgccttcaaaaccagcatcatgtgacaaccttgccaattcctgctgc
cagcttcaagtcagcccagctccttagtcggcagctgtatatacgcttct
gtgttctcaccaagaacacacttcctgttggcccagtgtcaagcactggg
tttctctaaaatctccttagcagttatagacgtttgcagatttttctgtt
tctgcaccttccctctcggaaattttacttttcccatacacctttcctcc
accaaacaaattagctcatcatctttaaatttcacttcacttaagttctt
aggacatgaacagaataaagacaggttccttaacaaaatgtcacacggac
ggccccagccaagttcatgacatgacagtccttggttctctctttgaaac
cttatgagccagaccttcactgtccttcacttcattcctctatacactgt
tgtcttccaggatgccactagaacatcctattaagccctgtttacagtac
tcagtgtttggttttttatcccaaagttcaaaattctatacattacactc
acaaacaggttgcaaaggcctaaactcacagggtcagttttatcgcacag
caacccactctcacttacgactctctgtcttcaggctttttttctgtttc
tgataaaaaggaccaattcgatccactctatggggaaagggtttattagc
gcatgtattgggaggtttatattttcaccatcatgcaacagtgtgagagt
c
gaattcttttttatatattgtgctttgaaatgagttatctttagttttgt
ttcagaaatgtatacaacttgttttgctattttgtggtttcaacataaaa
ctaatttaatagaaaataatgtatttatttcttaaggattaaaaataaaa
catttaaacgcttccttaaaatgtctatatgctgactcaaattcttttcc
taaacgacaccaatggtgtctcttccagaccgcctgccaagggatcactc
tagaaaaaacttaaatcaaggatgagagtggatgggcaatggcaaacgag
tggcccctcctgcaatgattcttctgacttttaaaattatcaaaaccctt
tcctttgtgatctaaagctgtttcttatgcttttcctgaggaaaaaaatg
tgactttgggaatatgaaagtctatatgaaagcatagtttatattaagcc
tataaatcacacatttactgacaataagtcaaaaatattttaaaataaca
ctttaacaaaacaaaacataaataacaaaaaaggcttttgaataaataag
atgttacaattttgacagatgaatgcaaatttgcatactaataagatgaa
tgtggttgtttatttctatagaaaaattaaatcttagctaaatttttgat
cgcgtaagacacagcatatttgatgatttttcagaattcaccaatattct
gattctctaatcagcaaaactgagaatgctgttttacataagtagaaaat
aagatgacagaagcatgtttcagaattactgaaaatcctcttctcattgc
aggtcattgaaacgaattaaaaaatctgtttaaaggctgttttatgaaac
tcaaggtggcaattcaaacagtgatttagaaaaatcaagcattcctagca
atacacagatgtactaagttgttactttcatgctgagaaataatggtaga
aaatagttgaaatattttccataattaaactatttattattttttgtaga
acagaacatttgtatgcacagcagacactaatatttatacccaatatttc
tcaagtctgagctgaggcactgtgaatccatgagcttccattcaggtgag
catcatcaatgattttatttttgactaacttttgatctgtgcatcgaaat
ttgatggtccaattcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52888042_52889216
seq2: B6Ng01-338F04.g_65_1232

seq1  GAATTCTTTTTTATATATTGTGCTTTGAAATGAGTTATCTTTAGTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTATATATTGTGCTTTGAAATGAGTTATCTTTAGTTTTGT  50

seq1  TTCAGAAATGTATACAACTTGTTTTGCTATTTTGTGGTTTCAACATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATGTATACAACTTGTTTTGCTATTTTGTGGTTTCAACATAAAA  100

seq1  CTAATTTAATAGAAAATAATGTATTTATTTCTTAAGGATTAAAAATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTAATAGAAAATAATGTATTTATTTCTTAAGGATTAAAAATAAAA  150

seq1  CATTTAAACGCTTCCTTAAAATGTCTATATGCTGACTCAAATTCTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACGCTTCCTTAAAATGTCTATATGCTGACTCAAATTCTTTTCC  200

seq1  TAAACGACACCAATGGTGTCTCTTCCAGACCGCCTGCCAAGGGATCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGACACCAATGGTGTCTCTTCCAGACCGCCTGCCAAGGGATCACTC  250

seq1  TAGAAAAAACTTAAATCAAGGATGAGAGTGGATGGGCAATGGCAAACGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAACTTAAATCAAGGATGAGAGTGGATGGGCAATGGCAAACGAG  300

seq1  TGGCCCCTCCTGCAATGATTCTTCTGACTTTTAAAATTATCAAAACCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTCCTGCAATGATTCTTCTGACTTTTAAAATTATCAAAACCCTT  350

seq1  TCCTTTGTGATCTAAAGCTGTTTCTTATGCTTTTCCTGAGGAAAAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGATCTAAAGCTGTTTCTTATGCTTTTCCTGAGGAAAAAAATG  400

seq1  TGACTTTGGGAATATGAAAGTCTATATGAAAGCATAGTTTATATTAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTGGGAATATGAAAGTCTATATGAAAGCATAGTTTATATTAAGCC  450

seq1  TATAAATCACACATTTACTGACAATAAGTCAAAAATATTTTAAAATAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATCACACATTTACTGACAATAAGTCAAAAATATTTTAAAATAACA  500

seq1  CTTTAACAAAACAAAACATAAATAACAAAAAAGGCTTTTGAATAAATAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACAAAACAAAACATAAATAACAAAAAAGGCTTTTGAATAAATAAG  550

seq1  ATGTTACAATTTTGACAGATGAATGCAAATTTGCATACTAATAAGATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAATTTTGACAGATGAATGCAAATTTGCATACTAATAAGATGAA  600

seq1  TGTGGTTGTTTATTTCTATAGAAAAATTAAATCTTAGCTAAATTTTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTTTATTTCTATAGAAAAATTAAATCTTAGCTAAATTTTTGAT  650

seq1  CGCGTAAGACACAGCATATTTGATGATTTTTCAGAATTCACCAATATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTAAGACACAGCATATTTGATGATTTTTCAGAATTCACCAATATTCT  700

seq1  GATTCTCTAATCAGCAAAACTGAGAATGCTGTTTTACATAAGTAGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCTAATCAGCAAAACTGAGAATGCTGTTTTACATAAGTAGAAAAT  750

seq1  AAGATGACAGAAGCATGTTTCAGAATTACTGAAAATCCTCTTCTCATTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGACAGAAGCATGTTTCAGAATTACTGAAAATCCTCTTCTCATTGC  800

seq1  AGGTCATTGAAACGAATTAAAAAATCTGTTTAAAGGCTGTTTTATGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATTGAAACGAATTAAAAAATCTGTTTAAAGGCTGTTTTATGAAAC  850

seq1  TCAAGGTGGCAATTCAAACAGTGATTTAGAAAAATCAAGCATTCCTAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTGGCAATTCAAACAGTGATTTAGAAAAATCAAGCATTCCTAGCA  900

seq1  ATACACAGATGTACTAAGTTGTTACTTTCATGCTGAGAAATAATGGTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGATGTACTAAGTTGTTACTTTCATGCTGAGAAATAATGGTAGA  950

seq1  AAATAGTTGAAATATTTTTCCATAATTAAACTATT--ATATTTTTGTAAG  998
      |||||||||||||| ||||||||||||||||||||   |||||||   ||
seq2  AAATAGTTGAAATA-TTTTCCATAATTAAACTATTTATTATTTTTTGTAG  999

seq1  AACAGAAACATTTGTATGCACAGCAAGAACACTATAATTTATACCCCAAT  1048
      ||||| |||||||||||||||||||   ||||||  ||||||| ||||||
seq2  AACAG-AACATTTGTATGCACAGCA--GACACTAATATTTATA-CCCAAT  1045

seq1  A-TTCTCAAGTCTGAGCTGAGGCACTGTGAAATCATGAGCTTTCATTCAG  1097
      | |||||||||||||||||||||||||||||  ||||||||| |||||||
seq2  ATTTCTCAAGTCTGAGCTGAGGCACTGTGAATCCATGAGCTTCCATTCAG  1095

seq1  GTGAGCATCATCATGGATTTTATTTTGAATTAATTTTTGATCTGTGCATT  1147
      |||||||||||||  |||||||||||  | ||| ||||||||||||||  
seq2  GTGAGCATCATCAATGATTTTATTTTTGACTAACTTTTGATCTGTGCA--  1143

seq1  TGGAAAATTTTTATTGTTCCAATTCCTT  1175
      | ||||   |||  || |||||||||||
seq2  TCGAAA---TTTGATGGTCCAATTCCTT  1168