BAC Information

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BAC

Clone NameB6Ng01-338I02
Chromosome1 (Build37)
Map Location 100,093,063 - 100,237,753
singlet/doubletdoublet
Overlap geneLOC666153, LOC100040887
Upstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneSlco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338I02.bB6Ng01-338I02.g
ACCGA122786GA122787
length1,201909
definitionB6Ng01-338I02.b B6Ng01-338I02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,236,568 - 100,237,753)(100,093,063 - 100,093,969)
sequence
gaattcttggcagtcaagcttcctctgaaaccctgaagtgctggtgtgac
caagctcctgggatcctaggatcctaagatcctgggcatgttagagcacc
tgaaattggtacctcctctagggaccatgaggctgtctttttagtcctaa
accaaagtagaccagtgccaactgtaaagaacctgagccactgatcgggt
ggggttcctgtgtctgtgctccagctgtctccaggcacccaggttctgtt
gcaacagatgttgggttctactcaccaatgatcctaagattctgggcttg
ctagggcacctgtggagtagagagccctctggagatcatgggactgcctt
ctgaaaatatctaataaaaaagaatttttaaatgacagtgttctggaaga
caatagtctaaaatggctcttctatacacacatacaatgtctcaaatacc
agaatctataactgggtatgtgacacatttgtcaaacagcaggtgtgagt
gtaaatcaggattttgagctcaagtctgtcctgatttataagccaagatt
gggacctcaatataagaccatgtgcccctcataaacatagacaccaaaac
tctgcgagtggtagggtcctgccagaaaataatgaagcaattctgatcat
ttcctcccccacaccacatcttcccttttgtaaacattatgcatagctgc
ttgaatcaataatcttcttttccattcaatgaggagcttcttccaacttt
tcttcccaggcccactttcttctctcaactcttctgctagtcatcattta
cgaagctgaacatcaaagctctcactgtctccatttttacctacttacta
gaaagagatcataggataccatgtgataaataaagagattaatagtcaag
agctctgtttcccttgcactgggtgaggcattatatgtagttcctattag
ttttcagaatgtgccgcagaccctctgggccccattgtctgcgtggaacg
ggttcttctagtcatgggtggacaaagcataggatgagtgacaaaataga
acgcacaacaggagaggtcgtggtgaatctgaatgtaatttttcaattcg
aacatcagaactttaatgcagaagaaccaataaggaggttggggtgaaca
atttacccgccagtcaaattgagttacccagaacgcttaatgaggactct
t

gaattccaggcaatgctgagagcagaagaaactcttctctagggattaac
aggttatctaaaccaaatacctcgctctgaagacaaatatacaagtaata
taaaactgatcaggtttatttaggctttagtatttaggaaaaaatatatt
ttattaataaaattagagagaaagaggctatgaacttaaagcagaaggca
gacaggtacataggaagtttacaggaaagggaagggagtggtgatatagt
tatattataatcacaaaaccaaacatgttatttttgaaaatattagaata
tgttcatagagcatatgtcttgggtactctatcaaaagtgtataaaacag
ataacagatatggtacatgatttttaaattatcctagaagaagataaaat
ggatcagagtctggaaacacctggaaaattttatatgagtttacagcagt
gtcaatacaaatatctgccgagacaaaactgacagaaaaattgcttgaga
catttgtttcgaagtcaggtgcttcaaaaaatatgcactaggcatttgtg
tcgagctgtgtgttgaggaaagtgatttttggtttggtgatgtctgaaag
ggagggctggatgaagttttcctcgtaatctgtaaaaggatatgagaggc
caagaagaggaagaaacatgctacggaaaggcaagactgtcagaaaaagc
tgatgtcaactgtagggggggtagttctgatgccttaaacaggaatctac
ttgtgaacactgaaggtccttttccctaattggttcttgattgattaata
aagatgctcgtgggccagtgagctgcagaataggggaatacttccaggtt
ttctgcaggcaggctagcagacacagaggagagaggtttgccatgcttgg
gcagtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100236568_100237753
seq2: B6Ng01-338I02.b_43_1243 (reverse)

seq1  AAGAG---TCATTAAGCG-TCTGGTTACCTCATTTGTACCTTGCGGGTA-  45
      |||||   |||||||||| ||||| || |||| || |  || ||||||| 
seq2  AAGAGTCCTCATTAAGCGTTCTGGGTAACTCAATT-TGACTGGCGGGTAA  49

seq1  --TG-TCA-CCCAACTTCCTTATTG--TCTTCTGCATAAAAAGTCTGATG  89
        || ||| |||||| |||||||||  |||||||||| |||  |||||||
seq2  ATTGTTCACCCCAACCTCCTTATTGGTTCTTCTGCATTAAAGTTCTGATG  99

seq1  TTCGATTTGAAAAATTACATTCAGATTCCACACGACCTCTCCTG-TGTGC  138
      ||||| ||||||||||||||||||||||  |||||||||||||| |||||
seq2  TTCGAATTGAAAAATTACATTCAGATTCACCACGACCTCTCCTGTTGTGC  149

seq1  G-TCTA-TTTGTCACTCATCCTATGCTTTGTCCACCCATGACTAG-AGAA  185
      | |||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTCTATTTTGTCACTCATCCTATGCTTTGTCCACCCATGACTAGAAGAA  199

seq1  -CCGTTCCACGCAGACAATGGGGCCCAGAGGGTCTGCGGCACATTCTGAA  234
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTCCACGCAGACAATGGGGCCCAGAGGGTCTGCGGCACATTCTGAA  249

seq1  AACTAATAGGAACTACATATAATGCCTCACCCAGTGCAAGGGAAACAGAG  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATAGGAACTACATATAATGCCTCACCCAGTGCAAGGGAAACAGAG  299

seq1  CTCTTGACTATTAATCTCTTTATTTATCACATGGTATCCTATGATCTCTT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACTATTAATCTCTTTATTTATCACATGGTATCCTATGATCTCTT  349

seq1  TCTAGTAAGTAGGTAAAAATGGAGACAGTGAGAGCTTTGATGTTCAGCTT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTAAGTAGGTAAAAATGGAGACAGTGAGAGCTTTGATGTTCAGCTT  399

seq1  CGTAAATGATGACTAGCAGAAGAGTTGAGAGAAGAAAGTGGGCCTGGGAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAATGATGACTAGCAGAAGAGTTGAGAGAAGAAAGTGGGCCTGGGAA  449

seq1  GAAAAGTTGGAAGAAGCTCCTCATTGAATGGAAAAGAAGATTATTGATTC  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTGGAAGAAGCTCCTCATTGAATGGAAAAGAAGATTATTGATTC  499

seq1  AAGCAGCTATGCATAATGTTTACAAAAGGGAAGATGTGGTGTGGGGGAGG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTATGCATAATGTTTACAAAAGGGAAGATGTGGTGTGGGGGAGG  549

seq1  AAATGATCAGAATTGCTTCATTATTTTCTGGCAGGACCCTACCACTCGCA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCAGAATTGCTTCATTATTTTCTGGCAGGACCCTACCACTCGCA  599

seq1  GAGTTTTGGTGTCTATGTTTATGAGGGGCACATGGTCTTATATTGAGGTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGGTGTCTATGTTTATGAGGGGCACATGGTCTTATATTGAGGTC  649

seq1  CCAATCTTGGCTTATAAATCAGGACAGACTTGAGCTCAAAATCCTGATTT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTTGGCTTATAAATCAGGACAGACTTGAGCTCAAAATCCTGATTT  699

seq1  ACACTCACACCTGCTGTTTGACAAATGTGTCACATACCCAGTTATAGATT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACCTGCTGTTTGACAAATGTGTCACATACCCAGTTATAGATT  749

seq1  CTGGTATTTGAGACATTGTATGTGTGTATAGAAGAGCCATTTTAGACTAT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATTTGAGACATTGTATGTGTGTATAGAAGAGCCATTTTAGACTAT  799

seq1  TGTCTTCCAGAACACTGTCATTTAAAAATTCTTTTTTATTAGATATTTTC  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCAGAACACTGTCATTTAAAAATTCTTTTTTATTAGATATTTTC  849

seq1  AGAAGGCAGTCCCATGATCTCCAGAGGGCTCTCTACTCCACAGGTGCCCT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCAGTCCCATGATCTCCAGAGGGCTCTCTACTCCACAGGTGCCCT  899

seq1  AGCAAGCCCAGAATCTTAGGATCATTGGTGAGTAGAACCCAACATCTGTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCCAGAATCTTAGGATCATTGGTGAGTAGAACCCAACATCTGTT  949

seq1  GCAACAGAACCTGGGTGCCTGGAGACAGCTGGAGCACAGACACAGGAACC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAACCTGGGTGCCTGGAGACAGCTGGAGCACAGACACAGGAACC  999

seq1  CCACCCGATCAGTGGCTCAGGTTCTTTACAGTTGGCACTGGTCTACTTTG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGATCAGTGGCTCAGGTTCTTTACAGTTGGCACTGGTCTACTTTG  1049

seq1  GTTTAGGACTAAAAAGACAGCCTCATGGTCCCTAGAGGAGGTACCAATTT  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGACTAAAAAGACAGCCTCATGGTCCCTAGAGGAGGTACCAATTT  1099

seq1  CAGGTGCTCTAACATGCCCAGGATCTTAGGATCCTAGGATCCCAGGAGCT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCTCTAACATGCCCAGGATCTTAGGATCCTAGGATCCCAGGAGCT  1149

seq1  TGGTCACACCAGCACTTCAGGGTTTCAGAGGAAGCTTGACTGCCAAGAAT  1184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACACCAGCACTTCAGGGTTTCAGAGGAAGCTTGACTGCCAAGAAT  1199

seq1  TC  1186
      ||
seq2  TC  1201


seq1: chr1_100093063_100093969
seq2: B6Ng01-338I02.g_65_973

seq1  GAATTCCAGGCAATGCTGAGAGCAGAAGAAACTCTTCTCTAGGGATTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAATGCTGAGAGCAGAAGAAACTCTTCTCTAGGGATTAAC  50

seq1  AGGTTATCTAAACCAAATACCTCGCTCTGAAGACAAATATACAAGTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATCTAAACCAAATACCTCGCTCTGAAGACAAATATACAAGTAATA  100

seq1  TAAAACTGATCAGGTTTATTTAGGCTTTAGTATTTAGGAAAAAATATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGATCAGGTTTATTTAGGCTTTAGTATTTAGGAAAAAATATATT  150

seq1  TTATTAATAAAATTAGAGAGAAAGAGGCTATGAACTTAAAGCAGAAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAATAAAATTAGAGAGAAAGAGGCTATGAACTTAAAGCAGAAGGCA  200

seq1  GACAGGTACATAGGAAGTTTACAGGAAAGGGAAGGGAGTGGTGATATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTACATAGGAAGTTTACAGGAAAGGGAAGGGAGTGGTGATATAGT  250

seq1  TATATTATAATCACAAAACCAAACATGTTATTTTTGAAAATATTAGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATAATCACAAAACCAAACATGTTATTTTTGAAAATATTAGAATA  300

seq1  TGTTCATAGAGCATATGTCTTGGGTACTCTATCAAAAGTGTATAAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAGAGCATATGTCTTGGGTACTCTATCAAAAGTGTATAAAACAG  350

seq1  ATAACAGATATGGTACATGATTTTTAAATTATCCTAGAAGAAGATAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGATATGGTACATGATTTTTAAATTATCCTAGAAGAAGATAAAAT  400

seq1  GGATCAGAGTCTGGAAACACCTGGAAAATTTTATATGAGTTTACAGCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGAGTCTGGAAACACCTGGAAAATTTTATATGAGTTTACAGCAGT  450

seq1  GTCAATACAAATATCTGCCGAGACAAAACTGACAGAAAAATTGCTTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATACAAATATCTGCCGAGACAAAACTGACAGAAAAATTGCTTGAGA  500

seq1  CATTTGTTTCGAAGTCAGGTGCTTCAAAAAATATGCACTAGGCATTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTCGAAGTCAGGTGCTTCAAAAAATATGCACTAGGCATTTGTG  550

seq1  TCGAGCTGTGTGTTGAGGAAAGTGATTTTTGGTTTGGTGATGTCTGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCTGTGTGTTGAGGAAAGTGATTTTTGGTTTGGTGATGTCTGAAAG  600

seq1  GGAGGGCTGGATGAAGTTTTCCTCGTAATCTGTAAAAGGATATGAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCTGGATGAAGTTTTCCTCGTAATCTGTAAAAGGATATGAGAGGC  650

seq1  CAAGAAGAGGAAGAAACATGCTACGGAAAGGCAAGACTGTCAG-AAAAGC  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAGAAGAGGAAGAAACATGCTACGGAAAGGCAAGACTGTCAGAAAAAGC  700

seq1  TGATGTCAACTGTAGGGGGGGTAGTTCTGATGCCTTAAACAGGAATCTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCAACTGTAGGGGGGGTAGTTCTGATGCCTTAAACAGGAATCTAC  750

seq1  TTGTGAACACTGAAGGTCCTTTTCCCTAATTGGTTCTTGATTGATTAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAACACTGAAGGTCCTTTTCCCTAATTGGTTCTTGATTGATTAATA  800

seq1  AAGATGCTCGT-GGCCAGTGAGCTGCAGAATA-GGGAATACTTCCAGGTT  847
      ||||||||||| |||||||||||||||||||| |||||||||||||||||
seq2  AAGATGCTCGTGGGCCAGTGAGCTGCAGAATAGGGGAATACTTCCAGGTT  850

seq1  TTCTGCAGGCAGGCTAGCAGACACAGAGGAGAAGAGGTTTGCCATGCTTG  897
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCTGCAGGCAGGCTAGCAGACACAGAGGAG-AGAGGTTTGCCATGCTTG  899

seq1  GGCAGTGGTG  907
      ||||||||||
seq2  GGCAGTGGTG  909


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