BAC Information

Click to search

BAC

Clone NameB6Ng01-338N06
Chromosome1 (Build37)
Map Location 8,084,681 - 8,198,545
singlet/doubletdoublet
Overlap genenone
Upstream genePcmtd1, LOC545302, LOC665063, LOC665069, LOC100039408
Downstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-338N06.bB6Ng01-338N06.g
ACCGA123000GA123001
length1,1601,108
definitionB6Ng01-338N06.b B6Ng01-338N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,197,377 - 8,198,545)(8,084,681 - 8,085,624)
sequence
gaattctttatctgttgtgtctttgataaagtttttttttttttaatttg
gctgtgtcaatcagccttctgtttgacatttataatgcatatggtcttag
ttatggctgttacattgagaacatagagaacagtggtaaggactatgaga
taataaggaatataaaatgaaaatgagaatgagagggagagagaaagtaa
aaggaagagaagtgagaaaaggaggaaaatttaaattttatgatttctct
caacctattaggaaagtctctgagaggtctagacataatagatgaacatt
ttacaaatttctctagaatactatgactttcaatgtctggccctctatac
cataagttccaactattacaacaggtaagtaaataaagaatacatctttt
gagatttccatcctccatggaaatacattttagtatgccccttacaattt
ttatttagcctgtggcatataacgcccatgggaatggaaatgcaaagatg
catcaaacatttatattcaatcctagccggttcatgatatactgtgaaca
aaacaatttgtccagatgaaactgagttaacttggtactgagatagtggc
aaataatgaaagtaaaataaaaataacagcaataaaagtgttgagagtgt
tggaaagatggaaggcccagcgcttaagagcatttcctttggcagaagat
ctaagttctgttcccagcatccacttggtggctcacaaaagtctataata
cagttccagaggattcactatcctcttctggattccataggctccaggca
tatatgcagtacacagcatacatgtaggcagagcacatacatgcatagta
aaaataaataattccttaaaaggtttgttgaaatcatgaaaaagtaatgt
tatctctgttcagcagctataaaggaaaagaggagtgtttccaccccact
ggatgttttccagtagagtgaaatgaaatcaaagcaaagtgtactagaat
ggtgtgacctctcagcttctgagagacatcttgcatctcttcaaatctga
ctatggtaactatttcagcgtatggcaaattcatcagtatcacaggaaca
gagctaggtgtagtgaattgcagaagctcgtggaaatagtccatatgtgt
cttagtcagg

gaattcagtaagaatgttacctattctgtaacactcaaatttacttctag
tagagacagtgaaaataattaggcattacaatttacttgaatagagctag
aaatctcagggctagtctacatagtaattacttaggacaatagccgagtc
acacccaaacacaggaatacacaatgggctaagaaataggtgggttatag
tattatttatgaaaggattagtagaacagaatttctatggtgcaggattt
ttcactaggccccagaggaattagcataatcaggtatttactaaagaacc
cctggtggtgggtttaacaatagactagcattgtatcagagcattcacct
ggttcctgtgtttagccgatcttaattagggttgttcctattctcagttg
tgaacaaggcctggctcctgtcatctttttatgtatgcattttctttatt
tgctgtaagaaccagtgtaccttgtattcgacaagccttcttctttttct
tctatattaaaagtctggtgtttgcttggagaacagacatccagatacag
cactcccttgtgtctgtgtccgtttgtcactttttttttgtcaccaactg
catgtgcgcctgtaacggtaaccccaaaaatttttttccgcggattgagg
gaggccaactaggactggtccgtggcactgaatactatccaatgcaattc
agcatcttctttggaataatctccctttctcctagtacatgattctaatc
ctgtgcctaacaatcacaagtttgacatgtcaccactggccttactatta
cacatagggtccagtattttagcatgtctgagtattagtgttcttttaga
ccaattattaattatttctcacaacaatgacatcagtccccatgtctctc
tctactttaaagaggtgatagtgatttatacttcatagtgccttgtaaac
ttgtaattctgaagagtctacaacttgttcttaatctgtaaatataatga
ttataattctgaaattatagaaaatgtgctttcataaatataggtaggta
tgcaatcaatattttatttgtggacaaattggtggaacttctctgaaaag
aatatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_8197377_8198545
seq2: B6Ng01-338N06.b_48_1207 (reverse)

seq1  CCTGACTAAGACAC-TAT-GACTATTTTCCCACGAGCTCTCTGCATGTCA  48
      |||||||||||||| ||| ||||||||  ||||||||| ||||||  |||
seq2  CCTGACTAAGACACATATGGACTATTT--CCACGAGCT-TCTGCAATTCA  47

seq1  CTACACTGGGCTCTGTT-CTGTGATAACTGATGATTTTGCCATACGCTTG  97
      ||||||   |||||||| ||||||| |||||||| |||||||||||||  
seq2  CTACACCTAGCTCTGTTCCTGTGAT-ACTGATGAATTTGCCATACGCT--  94

seq1  GAAATAGTTTTACCATAGTCAAGATTTTGAAGAGATGCAAGATGTCTCTC  147
      |||||||  ||||||||||| ||| |||||||||||||||||||||||||
seq2  GAAATAG--TTACCATAGTC-AGA-TTTGAAGAGATGCAAGATGTCTCTC  140

seq1  AG-AGCTGAAGAGGTCACACCATTCTAGTACACTTTGCTTTTGATTTCAT  196
      || ||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  AGAAGCTG-AGAGGTCACACCATTCTAGTACACTTTGC-TTTGATTTCAT  188

seq1  TTCCACTCTACTGGAAAACATCCAGT-GGGTGGAAACACTCCTCTTTTCC  245
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TT-CACTCTACTGGAAAACATCCAGTGGGGTGGAAACACTCCTCTTTTCC  237

seq1  TTTATAGCTGCCTGAACAGAGATAACATTACTTTTTCATGATTTCAACAA  295
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGCTG-CTGAACAGAGATAACATTACTTTTTCATGATTTCAACAA  286

seq1  ACCTTTTAAGGAATTATTTATTTTTACTATGCATGTATGTGCTCTGCCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTAAGGAATTATTTATTTTTACTATGCATGTATGTGCTCTGCCTA  336

seq1  CATGTATGCTGTGTACTGCATATATGCCTGGAGCCTATGGAATCCAGAAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGCTGTGTACTGCATATATGCCTGGAGCCTATGGAATCCAGAAG  386

seq1  AGGATAGTGAATCCTCTGGAACTGTATTATAGACTTTTGTGAGCCACCAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGTGAATCCTCTGGAACTGTATTATAGACTTTTGTGAGCCACCAA  436

seq1  GTGGATGCTGGGAACAGAACTTAGATCTTCTGCCAAAGGAAATGCTCTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCTGGGAACAGAACTTAGATCTTCTGCCAAAGGAAATGCTCTTA  486

seq1  AGCGCTGGGCCTTCCATCTTTCCAACACTCTCAACACTTTTATTGCTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGGGCCTTCCATCTTTCCAACACTCTCAACACTTTTATTGCTGTT  536

seq1  ATTTTTATTTTACTTTCATTATTTGCCACTATCTCAGTACCAAGTTAACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTACTTTCATTATTTGCCACTATCTCAGTACCAAGTTAACT  586

seq1  CAGTTTCATCTGGACAAATTGTTTTGTTCACAGTATATCATGAACCGGCT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCATCTGGACAAATTGTTTTGTTCACAGTATATCATGAACCGGCT  636

seq1  AGGATTGAATATAAATGTTTGATGCATCTTTGCATTTCCATTCCCATGGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTGAATATAAATGTTTGATGCATCTTTGCATTTCCATTCCCATGGG  686

seq1  CGTTATATGCCACAGGCTAAATAAAAATTGTAAGGGGCATACTAAAATGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATATGCCACAGGCTAAATAAAAATTGTAAGGGGCATACTAAAATGT  736

seq1  ATTTCCATGGAGGATGGAAATCTCAAAAGATGTATTCTTTATTTACTTAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATGGAGGATGGAAATCTCAAAAGATGTATTCTTTATTTACTTAC  786

seq1  CTGTTGTAATAGTTGGAACTTATGGTATAGAGGGCCAGACATTGAAAGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTAATAGTTGGAACTTATGGTATAGAGGGCCAGACATTGAAAGTC  836

seq1  ATAGTATTCTAGAGAAATTTGTAAAATGTTCATCTATTATGTCTAGACCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATTCTAGAGAAATTTGTAAAATGTTCATCTATTATGTCTAGACCT  886

seq1  CTCAGAGACTTTCCTAATAGGTTGAGAGAAATCATAAAATTTAAATTTTC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGACTTTCCTAATAGGTTGAGAGAAATCATAAAATTTAAATTTTC  936

seq1  CTCCTTTTCTCACTTCTCTTCCTTTTACTTTCTCTCTCCCTCTCATTCTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTCACTTCTCTTCCTTTTACTTTCTCTCTCCCTCTCATTCTC  986

seq1  ATTTTCATTTTATATTCCTTATTATCTCATAGTCCTTACCACTGTTCTCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTTATATTCCTTATTATCTCATAGTCCTTACCACTGTTCTCT  1036

seq1  ATGTTCTCAATGTAACAGCCATAACTAAGACCATATGCATTATAAATGTC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTCAATGTAACAGCCATAACTAAGACCATATGCATTATAAATGTC  1086

seq1  AAACAGAAGGCTGATTGACACAGCCAAATTAAAAAAAAAAAAACTTTATC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAGGCTGATTGACACAGCCAAATTAAAAAAAAAAAAACTTTATC  1136

seq1  AAAGACACAACAGATAAAGAATTC  1169
      ||||||||||||||||||||||||
seq2  AAAGACACAACAGATAAAGAATTC  1160


seq1: chr1_8084681_8085624
seq2: B6Ng01-338N06.g_249_1176

seq1  AAGAAATAGGTGGGTTATAGTATTATTTATGAAAGGATTAGTAGAACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAGGTGGGTTATAGTATTATTTATGAAAGGATTAGTAGAACAGA  50

seq1  ATTTCTATGGTGCAGGATTTTTCACTAGGCCCCAGAGGAATTAGCATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATGGTGCAGGATTTTTCACTAGGCCCCAGAGGAATTAGCATAAT  100

seq1  CAGGTATTTACTAAAGAACCCCTGGTGGTGGGTTTAACAATAGACTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTACTAAAGAACCCCTGGTGGTGGGTTTAACAATAGACTAGCA  150

seq1  TTGTATCAGAGCATTCACCTGGTTCCTGTGTTTAGCCGATCTTAATTAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCAGAGCATTCACCTGGTTCCTGTGTTTAGCCGATCTTAATTAGG  200

seq1  GTTGTTCCTATTCTCAGTTGTGAACAAGGCCTGGCTCCTGTCATCTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCCTATTCTCAGTTGTGAACAAGGCCTGGCTCCTGTCATCTTTTT  250

seq1  ATGTATGCATTTTCTTTATTTGCTGTAAGAACCAGTGTACCTTGTATTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGCATTTTCTTTATTTGCTGTAAGAACCAGTGTACCTTGTATTCG  300

seq1  ACAAGCCTTCTTCTTTTTCTTCTATATTAAAAGTCTGGTGTTTGCTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCTTCTTCTTTTTCTTCTATATTAAAAGTCTGGTGTTTGCTTGGA  350

seq1  GAACAGACATCCAGATACAGCACTCCCTTGTGTCTGTGTCCGTTTGTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACATCCAGATACAGCACTCCCTTGTGTCTGTGTCCGTTTGTCAC  400

seq1  TTTTTTTTTGTCACCAACTGCATGTGCGCCTGTAACGGTAACCCCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGTCACCAACTGCATGTGCGCCTGTAACGGTAACCCCAAAAA  450

seq1  TTTTTTTCCGCGGATTGAGGGAGGCCAACTAGGACTGGTCCGTGGCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCGCGGATTGAGGGAGGCCAACTAGGACTGGTCCGTGGCACTG  500

seq1  AATACTATCCAATGCAATTCAGCATCTTCTTTGGAATAATCT-CCTTTCT  549
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AATACTATCCAATGCAATTCAGCATCTTCTTTGGAATAATCTCCCTTTCT  550

seq1  CCTAGTACATGATTCTAATCCTGTGCCTAACAATCACAAGTTTGACATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTACATGATTCTAATCCTGTGCCTAACAATCACAAGTTTGACATGT  600

seq1  CACCACTGGCCTTACTATTACACATA-GGTCCAGTATTTTAGCATGTCTG  648
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CACCACTGGCCTTACTATTACACATAGGGTCCAGTATTTTAGCATGTCTG  650

seq1  AGTATTAGTGTTCTTTTAGACCAATTATTTAATTATTTCTCACAACAATG  698
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTATTAGTGTTCTTTTAGACCAATTA-TTAATTATTTCTCACAACAATG  699

seq1  ACATCAGTCCCCATGTCTCTCTCTACTTTAAAGAGTTGATAGTGATTTTA  748
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  ACATCAGTCCCCATGTCTCTCTCTACTTTAAAGAGGTGATAGTGA-TTTA  748

seq1  TACTTCATAGTGCCTTGTAAAACTTGTAATTCTGAAGAAGTATACAACTT  798
      |||||||||||||||||| |||||||||||||||||| ||| ||||||||
seq2  TACTTCATAGTGCCTTGT-AAACTTGTAATTCTGAAG-AGTCTACAACTT  796

seq1  GTTCTTTAATCTGTAAATATAATTGATTATTAATTTCTGAAATTTAATAG  848
      |||| ||||||||||||||||| |||||||  | ||||||||||  ||||
seq2  GTTC-TTAATCTGTAAATATAA-TGATTAT--AATTCTGAAATT--ATAG  840

seq1  AAAATGTGCTTTCATAAATATTAGGTAAGTTATGCAATTAATATATTTTA  898
      |||||||||||||||||||| ||||| || |||||||| |  ||||||||
seq2  AAAATGTGCTTTCATAAATA-TAGGT-AGGTATGCAATCA--ATATTTTA  886

seq1  TTTGTTGACAAAATTTGTTGAAAATTTCTCTGAGAAGAATAATGAA  944
      ||||| ||||||  ||| ||  || |||||||| |||||| |||||
seq2  TTTGTGGACAAA--TTGGTG-GAACTTCTCTGAAAAGAAT-ATGAA  928


| Home | SequenceCutter | Blast | Download |