BAC Information

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BAC

Clone NameB6Ng01-339D17
Chromosome1 (Build37)
Map Location 98,263,349 - 98,359,588
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331, EG634346
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339D17.bB6Ng01-339D17.g
ACCGA123286GA123287
length1,124420
definitionB6Ng01-339D17.b B6Ng01-339D17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,358,446 - 98,359,588)(98,263,349 - 98,263,759)
sequence
gaattctttagtgaactctctaaggcttataaatattaacgaaagattaa
agcagcacatctacagggaaaagatgactttcaacttatatactaaagag
aatcatatactaaagctgactttcaggcaatgtcagcatacccatctcct
attgaagaggaagaggtacatttgcagattggtataaaagatttagttgg
ctaaaatcaactttcttcctgtggggacacccacagagggtgtatgctat
atctgatgaacacaagatcactatgctatcttgtggggattaaataccaa
aaaacataagcacattatggtatattcaagactactgcctctttaataaa
ttattgtttgtctctgtcagggatattttaattcttctagagtagccatg
gacttgagacagaattacttgttatttgagaatactgtaaaatttcaact
tatatactaaagagaatatttacttgatataaatggcattttacattttt
ataaagacacatgttcttataaatagaacgatgctcagatgacttccaaa
aacagcaataaaaatgaattatgtccttggaatgtggaaaaagacatatg
atttgaattaactgatttttttattgactgcatttgtgctgagaaatgtg
ctgtctaccttccatgccttaagcatcaaaaatgcccaacatatcaaata
aaatacaatcaaaagagccaagatgaatttattttacaagaaattaagta
aattagaaggttaatatagttctcgtggacttcaaaaatagctatatttc
attgccttcttgaaaaatataagaataaaagcttcataaaatgttattct
atagatgaaatattagttatttttttcttcagagaaccccattgctctat
tttgcctctgacagcctccctttaatttgataaacggtgttttttgttca
atgcaagtagttgaaataacttgaaatgccttatcctctgatgcatctgg
attacagagctctaaagaatatactgcttgagctgggacatatgatattt
cagtgactgaagcctgtcaaatatagagcatgctggtggatatgtagaat
aatgaatgtactatgacattgaaa

gaattctttatgtcaaacaagtaaatggtagatagatacaaaatgactct
gtatgatttggttcatcaatatgaattaagtacctctgaacgaaaaatat
actcatgaacttcaatgccacccccaacctgtttataagatattttacta
aacattatttactcatgaaacttagaagttaatagtataaagagaagaca
atatcactatatttagcctgataatcataatattaaccataaattatttt
attttattccagggatggtactattagtaaagaaataggggataataggg
gatagtggggtatcaactttctctctctctctctctctctctctctctct
ctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgagtgtgagttgagtcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_98358446_98359588
seq2: B6Ng01-339D17.b_44_1167 (reverse)

seq1  TTTCAATTGTCATAGTTCCATTCATTTATTCTACATATCCAACAGGCATT  50
      |||||| |||||||| | |||||| |||||||||||||||| || ||| |
seq2  TTTCAA-TGTCATAG-TACATTCA-TTATTCTACATATCCACCA-GCA-T  45

seq1  GCCTTCTATATTTTGACA-GCTTCAGTTCCACTGAAATATTCATAATGTT  99
      ||  |||||| ||||||| ||||||||  |||||||||| |||| ||| |
seq2  GC--TCTATA-TTTGACAGGCTTCAGT--CACTGAAATA-TCAT-ATG-T  87

seq1  CCCAGCCTCAAGCAGTATATTCTTTAGAAGCTTCTGTAAATCCAGAATGC  149
      ||||| ||||||||||||||||||||| ||| ||||| ||||||| ||||
seq2  CCCAG-CTCAAGCAGTATATTCTTTAG-AGC-TCTGT-AATCCAG-ATGC  132

seq1  ATCAAGAGGATAAGGCATTTCAAGTTATTTCAACTACTTTGCATTGAACA  199
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATC-AGAGGATAAGGCATTTCAAGTTATTTCAACTAC-TTGCATTGAACA  180

seq1  AAAAACACCGTTTATCAAATTAAAGGGAGGCTGTCAGAGGCAAAATAGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACACCGTTTATCAAATTAAAGGGAGGCTGTCAGAGGCAAAATAGAG  230

seq1  CAATGGGGTTCTCTGAAGAAAAAAATAACTAATATTTCATCTATAGAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGGTTCTCTGAAGAAAAAAATAACTAATATTTCATCTATAGAATA  280

seq1  ACATTTTATGAAGCTTTTATTCTTATATTTTTCAAGAAGGCAATGAAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATGAAGCTTTTATTCTTATATTTTTCAAGAAGGCAATGAAATA  330

seq1  TAGCTATTTTTGAAGTCCACGAGAACTATATTAACCTTCTAATTTACTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTATTTTTGAAGTCCACGAGAACTATATTAACCTTCTAATTTACTTA  380

seq1  ATTTCTTGTAAAATAAATTCATCTTGGCTCTTTTGATTGTATTTTATTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGTAAAATAAATTCATCTTGGCTCTTTTGATTGTATTTTATTTG  430

seq1  ATATGTTGGGCATTTTTGATGCTTAAGGCATGGAAGGTAGACAGCACATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGGGCATTTTTGATGCTTAAGGCATGGAAGGTAGACAGCACATT  480

seq1  TCTCAGCACAAATGCAGTCAATAAAAAAATCAGTTAATTCAAATCATATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACAAATGCAGTCAATAAAAAAATCAGTTAATTCAAATCATATG  530

seq1  TCTTTTTCCACATTCCAAGGACATAATTCATTTTTATTGCTGTTTTTGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCACATTCCAAGGACATAATTCATTTTTATTGCTGTTTTTGGA  580

seq1  AGTCATCTGAGCATCGTTCTATTTATAAGAACATGTGTCTTTATAAAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTGAGCATCGTTCTATTTATAAGAACATGTGTCTTTATAAAAAT  630

seq1  GTAAAATGCCATTTATATCAAGTAAATATTCTCTTTAGTATATAAGTTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGCCATTTATATCAAGTAAATATTCTCTTTAGTATATAAGTTGA  680

seq1  AATTTTACAGTATTCTCAAATAACAAGTAATTCTGTCTCAAGTCCATGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACAGTATTCTCAAATAACAAGTAATTCTGTCTCAAGTCCATGGC  730

seq1  TACTCTAGAAGAATTAAAATATCCCTGACAGAGACAAACAATAATTTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGAAGAATTAAAATATCCCTGACAGAGACAAACAATAATTTATT  780

seq1  AAAGAGGCAGTAGTCTTGAATATACCATAATGTGCTTATGTTTTTTGGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGCAGTAGTCTTGAATATACCATAATGTGCTTATGTTTTTTGGTA  830

seq1  TTTAATCCCCACAAGATAGCATAGTGATCTTGTGTTCATCAGATATAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCCACAAGATAGCATAGTGATCTTGTGTTCATCAGATATAGCA  880

seq1  TACACCCTCTGTGGGTGTCCCCACAGGAAGAAAGTTGATTTTAGCCAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCTCTGTGGGTGTCCCCACAGGAAGAAAGTTGATTTTAGCCAACT  930

seq1  AAATCTTTTATACCAATCTGCAAATGTACCTCTTCCTCTTCAATAGGAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTATACCAATCTGCAAATGTACCTCTTCCTCTTCAATAGGAGA  980

seq1  TGGGTATGCTGACATTGCCTGAAAGTCAGCTTTAGTATATGATTCTCTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGCTGACATTGCCTGAAAGTCAGCTTTAGTATATGATTCTCTTT  1030

seq1  AGTATATAAGTTGAAAGTCATCTTTTCCCTGTAGATGTGCTGCTTTAATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATAAGTTGAAAGTCATCTTTTCCCTGTAGATGTGCTGCTTTAATC  1080

seq1  TTTCGTTAATATTTATAAGCCTTAGAGAGTTCACTAAAGAATTC  1143
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTTAATATTTATAAGCCTTAGAGAGTTCACTAAAGAATTC  1124


seq1: chr1_98263349_98263759
seq2: B6Ng01-339D17.g_67_469

seq1  GAATTCTTTATGTCAAACAAGTAAATGGTAGATAGATACAAAATGACTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGTCAAACAAGTAAATGGTAGATAGATACAAAATGACTCT  50

seq1  GTATGATTTGGTTCATCAATATGAATTAAGTACCTCTGAACGAAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGATTTGGTTCATCAATATGAATTAAGTACCTCTGAACGAAAAATAT  100

seq1  ACTCATGAACTTCAATGCCACCCCCAACCTGTTTATAAGATATTTTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGAACTTCAATGCCACCCCCAACCTGTTTATAAGATATTTTACTA  150

seq1  AACATTATTTACTCATGAAACTTAGAAGTTAATAGTATAAAGAGAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTTACTCATGAAACTTAGAAGTTAATAGTATAAAGAGAAGACA  200

seq1  ATATCACTATATTTAGCCTGATAATCATAATATTAACCATAAATTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTATATTTAGCCTGATAATCATAATATTAACCATAAATTATTTT  250

seq1  ATTTTATTCCAGGGATGGTACTATTAGTAAAGAAATAGGGGATAATAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCCAGGGATGGTACTATTAGTAAAGAAATAGGGGATAATAGGG  300

seq1  GATAGTGGGGTATCAACTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  350
      |||||||||||||||||||        |||||||||||||||||||||||
seq2  GATAGTGGGGTATCAACTT--------TCTCTCTCTCTCTCTCTCTCTCT  342

seq1  CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGT  392

seq1  GTGTGTGTGTG  411
      |||||||||||
seq2  GTGTGTGTGTG  403


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