BAC Information

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BAC

Clone NameB6Ng01-339L07
Chromosome1 (Build37)
Map Location 41,691,784 - 41,820,292
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339L07.bB6Ng01-339L07.g
ACCGA123626GA123627
length1,1511,100
definitionB6Ng01-339L07.b B6Ng01-339L07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,819,118 - 41,820,292)(41,691,784 - 41,692,891)
sequence
gaattcataagaccaatagtgatagcagcaatgttatccatagctgctag
tgaacatcaataattccacattttggagttggaggcaggaggaaccgggt
ttctaggtagccagagtcccaaagggagaccttaattggccattctttct
acaggtaactaagatttccatgtgttgcctattgaaatagatttggacaa
caaaccgtgagaagtaagactaaaaagaactaaaaaaaaaaaaagccaac
atgcactaactgtttcaaataataagctgttttactttaacatgggaata
aaataaaatttatttctatagtatgtcctaaaaatatttgttgttcttca
ataatggtagctacttttaagttcaaaatttattcataaacaaatagtta
tttgttaaaagctgacttcaatatatattactattacattttctttgtaa
ttattttagtaaaacatgattgagctttgccctgaaacactgaattaaaa
aaaatgtaatatagctgagaatagtgtttccaattaaaaaaaaaaccata
ccaggttaaaaaaatcacttgatattttttctaaagaatttatagattat
tcatgtgaaaaaaatgagaatatatgtaagtactgtgtactagaatttga
aatttgaaagatgttcccaatgctagcataaataaggatcagaagttagg
acaggtaaaacatacttaaaattctaaaggaataaaactgtatttaaact
cagaaaatgcaaaatgagaaacatgaaataaaacacaatatgaagactcc
attttgagagcatggtcaatccaagaaagcaaatttaggaatgttgtgca
ttatgacattgacgtaggtttacagtaccaattagctatttagtttaaat
gtttataaaacctttttttctccttgatgcctgggttaaatgcacttcag
aattttatacgtgactcaacaatgctacaacactgcatgaaaaggatcac
ttatttgttacaaactatgagatccttgcatactatacagagcatagtag
tctcagatgggagatctgataatctgacaattattactcgaaaaaacaaa
acagtaactcttgaattaggatagtgcctattcaggaaataagtcttcac
t

gaattcccagaagctaactgtattttgttgctcaaatttcagcttaatgt
cataaaataggaaagcaatttcaaacaataaataggataatgccttttac
ctgggagttttccaagagacaggagaaggcatagtcctttaaagagttat
cttgacttcactgtgtttctgctgttgctggtgccaaggcttgagatgtg
ggagatcatcgggctggttataaattagtgctctacctttcacctagctt
actaatatccaaaatttctgacagcagcttccaatccatcaccagaaagt
aagtagtccatcattgaaagaaataaaaatgttcggcaacagcctgctat
ttcaggagagaaagaacaacctcttgcctgtaatacaaaataggaaatcc
tgcttggaagaggagacagcagtaatttttctcatggtttaggatgtatg
tggtaaattaatagtcactacagtttattgatatgttacaaaatgccagg
atatgggaagacacaaaaagcaacctcaccgaagaaaataatagttccac
tagaaattaagtaattatgaccatcttgtaatagaggagatagtagcctt
tattctttgccttgtcctctctctgtcctcacttttaaaactctttctta
ttacagggaatggaagtaagagcactagccttaaaaacacactttgaatt
caaagtcaggagagctcgttgctttaagcattatctttaagaagctttga
tattaaatgcacagatgaaagtgctttttgtagatatttctcagtaagag
gacacttgaagtacattgagagaggcaggaatttaatgtatagtaatttc
ttgttagatattgctgcatttgagcttctaaaagtaatacactctgattc
tgcttatacgggatcaatagggtctacaaccatttttaccatggcacatg
catttgtgggccatacattatggctttcctcacatgatcatatttaaata
taaccaactactgttggggactcacatgtattattagctaaaaacaaatg
ctctctttggtttatgaaatctaactcctcagtgctgggaattcattgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41819118_41820292
seq2: B6Ng01-339L07.b_48_1198 (reverse)

seq1  AGTGAAGACTTATTT-CTGAATA-GCACTATACTATATTCAAGAGTTTAC  48
      ||||||||||||||| ||||||| ||||||| ||| ||||||||| ||||
seq2  AGTGAAGACTTATTTCCTGAATAGGCACTATCCTA-ATTCAAGAG-TTAC  48

seq1  TTTTGTTTTTTGTTTTTTTTTCTGAGTTATTATTTTGGTCAGATTAACCA  98
           | |||||||||||     |||| || |||   |||||||| | ||
seq2  -----TGTTTTGTTTTTT----CGAGTAATAATT---GTCAGATT-ATCA  85

seq1  GATCTCCCATTCTTGAGGACTTACTATGCCTCTGGTATAGGTATGCAAGG  148
      ||||||||||   ||| ||| ||||||| |||| ||||| ||||||||||
seq2  GATCTCCCAT--CTGA-GAC-TACTATG-CTCT-GTATA-GTATGCAAGG  128

seq1  ATCTCATAGTTTGTAACAAATAAGTGATCCTTTTCATGGCAGTGTTGGTA  198
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  ATCTCATAGTTTGTAACAAATAAGTGATCCTTTTCAT-GCAGTGTT-GTA  176

seq1  GCATTGTTGAGTCACGTATTAAAATTCTGAAGTGCATTTTAACCCAGGCA  248
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  GCATTGTTGAGTCACGTA-TAAAATTCTGAAGTGCA-TTTAACCCAGGCA  224

seq1  TCAAGGAGAAAAAAAGGTTTTATAAACATTTAAACTAAATAGCTAATTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGAAAAAAAGGTTTTATAAACATTTAAACTAAATAGCTAATTGG  274

seq1  TACTGTAAACCTACGTCAATGTCATAATGCACAACATTCCTAAATTTGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTAAACCTACGTCAATGTCATAATGCACAACATTCCTAAATTTGCT  324

seq1  TTCTTGGATTGACCATGCTCTCAAAATGGAGTCTTCATATTGTGTTTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGATTGACCATGCTCTCAAAATGGAGTCTTCATATTGTGTTTTAT  374

seq1  TTCATGTTTCTCATTTTGCATTTTCTGAGTTTAAATACAGTTTTATTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTTCTCATTTTGCATTTTCTGAGTTTAAATACAGTTTTATTCCT  424

seq1  TTAGAATTTTAAGTATGTTTTACCTGTCCTAACTTCTGATCCTTATTTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTTAAGTATGTTTTACCTGTCCTAACTTCTGATCCTTATTTAT  474

seq1  GCTAGCATTGGGAACATCTTTCAAATTTCAAATTCTAGTACACAGTACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATTGGGAACATCTTTCAAATTTCAAATTCTAGTACACAGTACTT  524

seq1  ACATATATTCTCATTTTTTTCACATGAATAATCTATAAATTCTTTAGAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTCTCATTTTTTTCACATGAATAATCTATAAATTCTTTAGAAA  574

seq1  AAATATCAAGTGATTTTTTTAACCTGGTATGGTTTTTTTTTTAATTGGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCAAGTGATTTTTTTAACCTGGTATGGTTTTTTTTTTAATTGGAA  624

seq1  ACACTATTCTCAGCTATATTACATTTTTTTTAATTCAGTGTTTCAGGGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATTCTCAGCTATATTACATTTTTTTTAATTCAGTGTTTCAGGGCA  674

seq1  AAGCTCAATCATGTTTTACTAAAATAATTACAAAGAAAATGTAATAGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAATCATGTTTTACTAAAATAATTACAAAGAAAATGTAATAGTAA  724

seq1  TATATATTGAAGTCAGCTTTTAACAAATAACTATTTGTTTATGAATAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGAAGTCAGCTTTTAACAAATAACTATTTGTTTATGAATAAAT  774

seq1  TTTGAACTTAAAAGTAGCTACCATTATTGAAGAACAACAAATATTTTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTTAAAAGTAGCTACCATTATTGAAGAACAACAAATATTTTTAG  824

seq1  GACATACTATAGAAATAAATTTTATTTTATTCCCATGTTAAAGTAAAACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACTATAGAAATAAATTTTATTTTATTCCCATGTTAAAGTAAAACA  874

seq1  GCTTATTATTTGAAACAGTTAGTGCATGTTGGCTTTTTTTTTTTTTAGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTATTTGAAACAGTTAGTGCATGTTGGCTTTTTTTTTTTTTAGTT  924

seq1  CTTTTTAGTCTTACTTCTCACGGTTTGTTGTCCAAATCTATTTCAATAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGTCTTACTTCTCACGGTTTGTTGTCCAAATCTATTTCAATAGG  974

seq1  CAACACATGGAAATCTTAGTTACCTGTAGAAAGAATGGCCAATTAAGGTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACATGGAAATCTTAGTTACCTGTAGAAAGAATGGCCAATTAAGGTC  1024

seq1  TCCCTTTGGGACTCTGGCTACCTAGAAACCCGGTTCCTCCTGCCTCCAAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGGGACTCTGGCTACCTAGAAACCCGGTTCCTCCTGCCTCCAAC  1074

seq1  TCCAAAATGTGGAATTATTGATGTTCACTAGCAGCTATGGATAACATTGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATGTGGAATTATTGATGTTCACTAGCAGCTATGGATAACATTGC  1124

seq1  TGCTATCACTATTGGTCTTATGAATTC  1175
      |||||||||||||||||||||||||||
seq2  TGCTATCACTATTGGTCTTATGAATTC  1151


seq1: chr1_41691784_41692891
seq2: B6Ng01-339L07.g_70_1169

seq1  GAATTCCCAGAAGCTAACTGTATTTTGTTGCTCAAATTTCAGCTTAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGAAGCTAACTGTATTTTGTTGCTCAAATTTCAGCTTAATGT  50

seq1  CATAAAATAGGAAAGCAATTTCAAACAATAAATAGGATAATGCCTTTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAGGAAAGCAATTTCAAACAATAAATAGGATAATGCCTTTTAC  100

seq1  CTGGGAGTTTTCCAAGAGACAGGAGAAGGCATAGTCCTTTAAAGAGTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTTTTCCAAGAGACAGGAGAAGGCATAGTCCTTTAAAGAGTTAT  150

seq1  CTTGACTTCACTGTGTTTCTGCTGTTGCTGGTGCCAAGGCTTGAGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTCACTGTGTTTCTGCTGTTGCTGGTGCCAAGGCTTGAGATGTG  200

seq1  GGAGATCATCGGGCTGGTTATAAATTAGTGCTCTACCTTTCACCTAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCATCGGGCTGGTTATAAATTAGTGCTCTACCTTTCACCTAGCTT  250

seq1  ACTAATATCCAAAATTTCTGACAGCAGCTTCCAATCCATCACCAGAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATATCCAAAATTTCTGACAGCAGCTTCCAATCCATCACCAGAAAGT  300

seq1  AAGTAGTCCATCATTGAAAGAAATAAAAATGTTCGGCAACAGCCTGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGTCCATCATTGAAAGAAATAAAAATGTTCGGCAACAGCCTGCTAT  350

seq1  TTCAGGAGAGAAAGAACAACCTCTTGCCTGTAATACAAAATAGGAAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGAGAAAGAACAACCTCTTGCCTGTAATACAAAATAGGAAATCC  400

seq1  TGCTTGGAAGAGGAGACAGCAGTAATTTTTCTCATGGTTTAGGATGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGAAGAGGAGACAGCAGTAATTTTTCTCATGGTTTAGGATGTATG  450

seq1  TGGTAAATTAATAGTCACTACAGTTTATTGATATGTTACAAAATGCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATTAATAGTCACTACAGTTTATTGATATGTTACAAAATGCCAGG  500

seq1  ATATGGGAAGACACAAAAAGCAACCTCACCGAAGAAAATAATAGTTCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGAAGACACAAAAAGCAACCTCACCGAAGAAAATAATAGTTCCAC  550

seq1  TAGAAATTAAGTAATTATGACCATCTTGTAATAGAGGAGATAGTAGCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAAGTAATTATGACCATCTTGTAATAGAGGAGATAGTAGCCTT  600

seq1  TATTCTTTGCCTTGTCCTCTCTCTGTCCTCACTTTTAAAACTCTTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTGCCTTGTCCTCTCTCTGTCCTCACTTTTAAAACTCTTTCTTA  650

seq1  TTACAGGGAATGGAAGTAAGAGCACTAGCCTTAAAAACACACTTTGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGGAATGGAAGTAAGAGCACTAGCCTTAAAAACACACTTTGAATT  700

seq1  CAAAGTCAGGAGAGCTCGTTGCTTTAAGCATTATCTTTAAGAAGCTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTCAGGAGAGCTCGTTGCTTTAAGCATTATCTTTAAGAAGCTTTGA  750

seq1  TATTAAATGCACAGATGAAAGTGCTTTTTGTAGATATTTCTCAGTAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATGCACAGATGAAAGTGCTTTTTGTAGATATTTCTCAGTAAGAG  800

seq1  GACACTTGAAGTACATTGAGAGAGGCAGGAATTTAATGTATAGTAATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTGAAGTACATTGAGAGAGGCAGGAATTTAATGTATAGTAATTTC  850

seq1  TTGTTAGATATTGCTGCATTTGAGCTTCTAAAAGTAATACACTCTGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGATATTGCTGCATTTGAGCTTCTAAAAGTAATACACTCTGATTC  900

seq1  TGCTTATACGGGATCAATAGGGTCTACAACCATTTTTACCATGGCACATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATACGGGATCAATAGGGTCTACAACCATTTTTACCATGGCACATG  950

seq1  CATTTGTGGGCCATAACAATTATGGCTTTCCTCACATGATCATATTTAAA  1000
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CATTTGTGGGCCATA--CATTATGGCTTTCCTCACATGATCATATTTAAA  998

seq1  TATAACCAACTTACTGTTTGGGGACTCACATGTATTATTAAGCT-AAAAC  1049
      |||||||||| ||||| |||||||||||||||||||||| |||| |||||
seq2  TATAACCAAC-TACTG-TTGGGGACTCACATGTATTATT-AGCTAAAAAC  1045

seq1  AAATGCTCTCTTTGGGTTTAATGAAATCTACACCCTCAAGTGCTGGGAAA  1099
      |||||||||||||||  || ||||||||||   |||| ||||||||| ||
seq2  AAATGCTCTCTTTGG--TTTATGAAATCTAACTCCTC-AGTGCTGGG-AA  1091

seq1  ATCATTGCA  1108
       ||||||||
seq2  TTCATTGCA  1100


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