BAC Information

Click to search

BAC

Clone NameB6Ng01-340D03
Chromosome1 (Build37)
Map Location 112,783,169 - 112,784,284
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh7, LOC100041429, EG626652
Downstream geneCdh19, EG666578, Dsel, LOC547247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340D03.b
ACCGA123975
length1,111
definitionB6Ng01-340D03.b
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgttcaatcctaatgagaatatccgttgcttattttctacga
gctggcaaatatttcagataaatataaaagaaggaaattcataatatctg
tcccacgaatggcttaagttttaataatggaaggaaaaagaaactacata
cttttatactattatttattattatgaagctaagtggtgtgcattcttaa
gcataggcaaagtaagtactactaaaagtaaattagtagtcagcgtgtct
tgctaagtaaatcatcactgatgagatacaaactatgaggagataagaat
aagaggaaagatttgaagaaggtattgatatgacattatgagactcaaca
gtgagagaaagaaagaataccatgtgtaagtaaagacagagtgataaatg
ctgaatggctcacaacatagttgcttattgtcataggtgttaagaagctt
tgggaacactccttgtaagaaaaagaaggattagtatcgcaataccataa
attagatgctagcatgatgctatgtcattgactgagtcattacgtttggt
cactatctacatagtgtttttatttttcaccttattgtctattctccatt
ataatgaagcgaataaggaaattcagctttttctatagattatagattga
ggttcataaagattagatgggtcctcaagttcacagttatgtaaattaaa
gtaaattatctcacactcatatcaagtggcagaaaattactcggagaaac
tgagcgctgcttatataattcgatttctattattaactttaagtattgct
tattttaaagaattgctattagaaacttctatataatattgagagttgga
tgaagagcttattagtataaaattggaacatatgtataatctcattaatt
tagatgttattacactattcaaaaatcaggcaatgtgttcaacatggtaa
acatgaatttcttgcagcacttgtgattaatgagaaaatatactactact
gatactgtttatgatgtttctagatcttatgagtctcagtatacaggtat
acaatagtcagatatcagctctgtagatgatgaaagtttaacatatttac
tatattatcaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_112783169_112784284
seq2: B6Ng01-340D03.b_43_1153

seq1  GAATTCATTGTTAAATCCTAATGAGAATATCTGTTGCTTATTTTCTACGA  50
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  GAATTCATTGTTCAATCCTAATGAGAATATCCGTTGCTTATTTTCTACGA  50

seq1  GCTGGCAAATATTTCAGATAAATATAAAAGAAGGAAATTCATAATATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCAAATATTTCAGATAAATATAAAAGAAGGAAATTCATAATATCTG  100

seq1  TCCCACGAATGGCTTAAGTTTTAATAATGGAAGGAAAAAGAAACTACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACGAATGGCTTAAGTTTTAATAATGGAAGGAAAAAGAAACTACATA  150

seq1  CTTTTATACTATTATTTATTATTATGAAGCTAAGTGGTGTGCATTCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATACTATTATTTATTATTATGAAGCTAAGTGGTGTGCATTCTTAA  200

seq1  GCATAGGCAAAGTAAGTACTACTAAAAGTAAATTAGTAGTCAGCGTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGCAAAGTAAGTACTACTAAAAGTAAATTAGTAGTCAGCGTGTCT  250

seq1  TGCTAAGTAAATCATCACTGATGAGATACAAACTATGAGGAGATAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGTAAATCATCACTGATGAGATACAAACTATGAGGAGATAAGAAT  300

seq1  AAGAGGAAAGATTTGAAGAAGGTATTGATATGACATTATGAGACTCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAGATTTGAAGAAGGTATTGATATGACATTATGAGACTCAACA  350

seq1  GTGAGAGAAAGAAAGAATACCATGTGTAAGTAAAGACAGAGTGATAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAGAAAGAAAGAATACCATGTGTAAGTAAAGACAGAGTGATAAATG  400

seq1  CTGAATGGCTCAGAACATAGTTGCTTATTGTCATAGGTGTTAAGAAGCTT  450
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGCTCACAACATAGTTGCTTATTGTCATAGGTGTTAAGAAGCTT  450

seq1  TGGGAACACTCCTTGTAAGAAAAAGAAGGATTAGTATCACAATACCATAA  500
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGAACACTCCTTGTAAGAAAAAGAAGGATTAGTATCGCAATACCATAA  500

seq1  ATTAGATGCTAGCATGATGCTATGTCATTGACTGAGTCATTAGGTTTGGT  550
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATTAGATGCTAGCATGATGCTATGTCATTGACTGAGTCATTACGTTTGGT  550

seq1  CACTATCTACATAGTGTTTTTATTTTTCACCTTATTGTCTATTCTCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCTACATAGTGTTTTTATTTTTCACCTTATTGTCTATTCTCCATT  600

seq1  ATAATGAAGCGAATAAGGAAATTCAGCTTTTTCTATAGATTATAAATTGA  650
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAATGAAGCGAATAAGGAAATTCAGCTTTTTCTATAGATTATAGATTGA  650

seq1  GGTTCATAAAGATTAGATGGGTCCTCAAGTTCACAGTTATGTAAATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATAAAGATTAGATGGGTCCTCAAGTTCACAGTTATGTAAATTAAA  700

seq1  GTAAATTATCTCACACTCATATCAAGTGGCAGAAAATTATTCTGAGAAAC  750
      ||||||||||||||||||||||||||||||||||||||| || |||||||
seq2  GTAAATTATCTCACACTCATATCAAGTGGCAGAAAATTACTCGGAGAAAC  750

seq1  TTAGTGCTGCTTATATAATTTGATTTCTATTATTAACTTTAAGTATTGCT  800
      | || ||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAGCGCTGCTTATATAATTCGATTTCTATTATTAACTTTAAGTATTGCT  800

seq1  TATTTTAAAGAATTGCTATTAGAAACTTCTATATAAGATTGAGAGTTGGA  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATTTTAAAGAATTGCTATTAGAAACTTCTATATAATATTGAGAGTTGGA  850

seq1  TGAAGAGCTTATTAATATAAAATTGGAACATATGTATAACCACATTAATT  900
      |||||||||||||| |||||||||||||||||||||||| | ||||||||
seq2  TGAAGAGCTTATTAGTATAAAATTGGAACATATGTATAATCTCATTAATT  900

seq1  TAGGTGTTATTAAACTATTCAAAAATCAGGGAATGTATTCAACATAGTAA  950
      ||| |||||||| ||||||||||||||||| ||||| |||||||| ||||
seq2  TAGATGTTATTACACTATTCAAAAATCAGGCAATGTGTTCAACATGGTAA  950

seq1  ACATGAATTT-TTGCAGCACTTGTGATTAATGAGAAAATATACAACTACT  999
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  ACATGAATTTCTTGCAGCACTTGTGATTAATGAGAAAATATACTACTACT  1000

seq1  AATACTGTTTATTATTGTTTCTAAGATTTTATGAATTATTAGTTATTAAA  1049
       ||||||||||| | ||||||| |||| ||||| | | | |||   || |
seq2  GATACTGTTTATGA-TGTTTCT-AGATCTTATG-AGTCTCAGT--ATACA  1045

seq1  GGTATACAATA-TTAGATATCA-CTCTGTAGGATGATGAAAATTTTACAT  1097
      ||||||||||| | |||||||| ||||||| |||||||||| ||| ||||
seq2  GGTATACAATAGTCAGATATCAGCTCTGTA-GATGATGAAAGTTTAACAT  1094

seq1  ATTTTACTATAATTATCAA  1116
      | |||||||| ||||||||
seq2  A-TTTACTAT-ATTATCAA  1111