BAC Information

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BAC

Clone NameB6Ng01-340H17
Chromosome1 (Build37)
Map Location 100,437,036 - 100,437,985
singlet/doubletsinglet
Overlap genenone
Upstream geneD1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887, Slco6d1, LOC100041868
Downstream geneEG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340H17.bB6Ng01-340H17.g
ACCGA124174GA124175
length1,1001,204
definitionB6Ng01-340H17.b B6Ng01-340H17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaataaatttaatccaccacattaaccgattaaaaggtaaaatcc
tcatgataatttcattagatacagaaaaggcctttaacaacgtccaacag
tccttcacaataaaagttattggagagactagaacacaagggagatatct
caacatgacaaaggcaatgttcagtaaacctccagctaatatcagcataa
acagggagaaactcaaagcaattctactaaaatgagaaacaaaacatgat
gtctacactttcgatacctactcaacatagtacttgaactcttcgctaat
acaatcagacaaatgaaggagatcaacaggatttaataagaaagaaaaga
ctcaaagtatcttgcagataagattctatccaagaacgcaaaacaaaaca
aaacaaaacaaaaacaaaaacaaaaacaaaaacaaaaacaaaaacagaaa
cctaactaaacagttctccatcaatataaacatttttagcatcgtaatag
gatacaaaaatcaacacacacacacaaatccttgtaccacttgtatgtac
atatgacaaacagaatgaggaaaaaaatcagcaaaacacctttcacaata
gcataaaagcaaaaaaaaaaaaaaaaaaaaaaaaaccaaaaaaacaaaac
aacaacaacaacaacaaaaaaaaaccattgggtatatctaaagaagtcat
taaaacttcaactgcttcccatgttctattttcacatgactctttccatc
tttgtccttttaaacagatcatgagttctacctttttagcagtgttctgt
atttctttaaatgagttattaatgccgttcttaaaatcctctaccagcat
cataatatatgattttaaatctgaatcttgcttttcagtgtgttggggta
tccagggctcactgtggtgggtgtactgggttctggtgatgccgtggtgg
tctggtttctgtagtagattcttaagtttgcctcgacatctggaaatctc
tgtgtagatgttttactgtctctgagtggagctgtctctgtgattctttt
taagtattatcatttacatttcatgctatcgaagtccccatacctctccc


gaattctggtgacagtaaatctacagaagagaacagaaactaggtacaca
agcatcacaaatataattcaagaaaagaaacagaatttcagacatggaag
atacaatggagggaatagatacagcagtcaaagaaaatattaaatctaga
aagttcctgacacaaaacatccaacaaatgtaggatcctatgaaaagacc
aaatctaagaattatagaaatagaggaagactcccagctacaaggcccag
taaatattttcaacaaaattatagaagaaaactattccaacctaaagaaa
gaaataagtacaaacatacaggaagcttacaaaataccaaaaagattggt
ctgaaatgaaaaatcctgtggcctcaggacaaacaaagcactaaatgtac
aaaataaagaaaagacaataaaagctgtaagggaaaaatgtcaagtaaca
catagagaccgacatcagaattacacctgactcctcaacagaaactctaa
aagaatgtacctttcccagaaaaatctgggaagatactttgaagattcaa
agggccctcagatgttaacccatactactataccctgtaaaacttttcat
gatagatggataaaaaagatgttccatgacaaaatcaaatttaaacacac
tgtatccaaaagtgtggtcactttgcctcttcttagaattgggaacaaaa
cacccatggaaggagttacagagacaaagtttggagctgagacaaaagga
aggaccatctagagactgccatatcttgggatccatcccataatcagcct
ccaaacacagacaccattgcatatgccagcaagattttgctgaaaggacc
ctgatatagctgtctcttgtgaggctatgccggggcctggcaaacacaga
agtggatactcacagtcagctattggatggagcacagggcccccaatgga
ggagctagagaagtacccaaaggagctaaaggggtctgcaaccctagtga
tggaacacaatatgaactaacctctgaggctcgtgtctcttaactgcata
tgtagcagagatggcctagtttggccatcaatggaaggagagctcctttg
tcttgccaacttatatgctcagtacaggaaacacaaggccaaaatgattg
tttgttaggggaattctcacacgactttactagtcgatcatactgtagca
ctcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100437036_100437985
seq2: B6Ng01-340H17.b_218_1142

seq1  AAACCTCCAGCTAATATCAGCATAAACAGGGAGAAACTCAAAGCAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCCAGCTAATATCAGCATAAACAGGGAGAAACTCAAAGCAATTCT  50

seq1  ACTAAAATGAGAAACAAAACATGATGTCTACACTTTCGATACCTACTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATGAGAAACAAAACATGATGTCTACACTTTCGATACCTACTCAA  100

seq1  CATAGTACTTGAACTCTTCGCTAATACAATCAGACAAATGAAGGAGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACTTGAACTCTTCGCTAATACAATCAGACAAATGAAGGAGATCA  150

seq1  ACAGGATTTAATAAGAAAGAAAAGACTCAAAGTATCTTGCAGATAAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGATTTAATAAGAAAGAAAAGACTCAAAGTATCTTGCAGATAAGATT  200

seq1  CTATCCAAGAACGCAAAACAAAACAAAACAAAACAAAAACAAAAACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAAGAACGCAAAACAAAACAAAACAAAACAAAAACAAAAACAAAA  250

seq1  ACAAAAACAAAAACAAAAACAGAAACCTAACTAAACAGTTCTCCATCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACAAAAACAAAAACAGAAACCTAACTAAACAGTTCTCCATCAAT  300

seq1  ATAAACATTTTTAGCATCGTAATAGGATACAAAAATCAACACACACACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTTTTAGCATCGTAATAGGATACAAAAATCAACACACACACAC  350

seq1  AAATCCTTGTACCACTTGTATGTACATATGACAAACAGAATGAGGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTGTACCACTTGTATGTACATATGACAAACAGAATGAGGAAAAA  400

seq1  AATCAGCAAAACACCTTTCACAATAGCATAAAAGCAAAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCAAAACACCTTTCACAATAGCATAAAAGCAAAAAAAAAAAAAAA  450

seq1  AAAAAAAAAACCAAAAAAACAAAACAACAACAACAACAACAAAAAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCAAAAAAACAAAACAACAACAACAACAACAAAAAAAAAC  500

seq1  CATTGGGTATATCTAAAGAAGTCATTAAAACTTCAACTGCTTCCCATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTATATCTAAAGAAGTCATTAAAACTTCAACTGCTTCCCATGTT  550

seq1  CTATTTTCACATGACTCTTTCCATCTTTGTCCTTTTAAACAGATCATGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCACATGACTCTTTCCATCTTTGTCCTTTTAAACAGATCATGAG  600

seq1  TTCTACCTTTTTAGCAGTGTTCTGTATTTCTTTAAATGAGTTATTAATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCTTTTTAGCAGTGTTCTGTATTTCTTTAAATGAGTTATTAATGC  650

seq1  CGTTCTTAAAATCCTCTACCAGCATCATAATATATGATTTTAAATCTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTAAAATCCTCTACCAGCATCATAATATATGATTTTAAATCTGAA  700

seq1  TCTTGCTTTTCAGGTGTGTTGGGGTATCCAGGGCTCACTGTGGTGGGTGT  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTTCA-GTGTGTTGGGGTATCCAGGGCTCACTGTGGTGGGTGT  749

seq1  ACTGGGTTCTGGTGATGCCGT-GTGGTCTTGGTTTCTGTTAGTAAGATTC  799
      ||||||||||||||||||||| |||||| ||||||||| |||| ||||||
seq2  ACTGGGTTCTGGTGATGCCGTGGTGGTC-TGGTTTCTG-TAGT-AGATTC  796

seq1  TTAAGTTTGCCTTCGACATCTGGAAATCTCTTGTGTTAGATGTTTTAACT  849
      ||||||||||| |||||||||||||||||| |||| |||||||||| |||
seq2  TTAAGTTTGCC-TCGACATCTGGAAATCTC-TGTG-TAGATGTTTT-ACT  842

seq1  GTCTCTGAGTGGAGCTTGTTCCTCCTGTGATTCTTTTTTTAAAGGTATTT  899
      ||||||||||||||| |||  || ||||||||||||||    | ||||| 
seq2  GTCTCTGAGTGGAGC-TGT--CT-CTGTGATTCTTTTT----AAGTATT-  883

seq1  TATTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCTCC  949
         |||||||||||||  ||||||||    |||| ||||||| |||||||
seq2  --ATCATTTACATTTC--ATGCTATC---GAAGT-CCCCATA-CCTCTCC  924

seq1  C  950
      |
seq2  C  925


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