BAC Information

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BAC

Clone NameB6Ng01-340K12
Chromosome1 (Build37)
Map Location 99,964,791 - 99,965,930
singlet/doubletsinglet
Overlap genenone
Upstream geneSlco6c1, EG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-340K12.bB6Ng01-340K12.g
ACCGA124289GA124290
length1,2391,130
definitionB6Ng01-340K12.b B6Ng01-340K12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tctatttagatttggacttagtacaaggagataagtatggatcaattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtcgctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattctagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttctttcagagacttgaagttttatcata
cagatctttcacttccttagttagagtcactctgagatattttatattat
ttgtgactattgagaagggtgttgtttccctaatttctttctcagcctgt
ttattcttgtgtagaagaaggccattgactgtttgagttaatttattatc
cagctacttccaccgaagctgtttatcaggtttaggagttctctgggtga
aatttttagggtcacttatatataccaatcattcatctgcaaagtggata
tttgaacttctccttcatttgtatctcttgattccgttgggtgcggcaat
gctcctgcgcataatacactcttagacagcatcacaata
gaattcagattccttaaatagagaccataagtaaatacaggaaataccca
aagttccgtagactagtgactttgtagtttttaatctcaggaaagcctta
tggtaatgtgactttcctattcatccaacgcgtagcccatatctttacag
gagccacaggcactcagaagcactctgaaatctggatttgtttgctgaga
gttcactgaaactccttcacagcgctaaagcaaacaaagatcttggtcac
actcagggtgaatagttatattttccacacctgtgtatcaagattcagaa
atctgttccaaccaaggccagacccagcatatggaaacttgaagttacat
gggagagtggcacctctatttagaacatgtccagaactaactcaactcat
gggatctacagacagaccttagaaatacacatatcaagaactacatctat
ccctcttctgccagctcataacctcagcttaggctgatagatatgtggac
tgtgggacaacttggggaggagaaaaaaataaaaagttaatgtggaagca
tttgttccaggccttcactgactacactgagttctagactatctggaggt
ggttttgtgaaatttgtgtcatttaatcattttgcttctaaaacagtggt
tgccagacctaatttgcaaatatctcataggaagagcaatcccatcagca
ctgtgttgaaaggtctcctaaatccaccacctgtgctggggctaaggctc
ctgttcttagtccagcttttacccccgtgatctggataaagatggaattc
ctgccaggtggccttatcctcctgtgtgtttataacttaactactcctcc
acaaacccactacgctggtcttaaatgctcccaggcagattgtgcttgct
tatagcagaggcctcggactttaagctgtagtaggttcacctcgtgagct
tgttgtacaagcattgggaaggcttttttttctccctttaagttaaagca
gtcaggagcccaataatttgcattccctagagtccctagatgccagtacc
cggtgggctagagctatactttgtttcccgctagaagctgcacataaata
ttgaggcattatgagttcctcttccttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_99964791_99965930
seq2: B6Ng01-340K12.g_68_1197

seq1  GAATTCAGATTCCTTAAATAGAGACCATAAGTAAATACAGGAAATACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCCTTAAATAGAGACCATAAGTAAATACAGGAAATACCCA  50

seq1  AAGTTCCGTAGACTAGTGACTTTGTAGTTTTTAATCTCAGGAAAGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCGTAGACTAGTGACTTTGTAGTTTTTAATCTCAGGAAAGCCTTA  100

seq1  TGGTAATGTGACTTTCCTATTCATCCAACGCGTAGCCCATATCTTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATGTGACTTTCCTATTCATCCAACGCGTAGCCCATATCTTTACAG  150

seq1  GAGCCACAGGCACTCAGAAGCACTCTGAAATCTGGATTTGTTTGCTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACAGGCACTCAGAAGCACTCTGAAATCTGGATTTGTTTGCTGAGA  200

seq1  GTTCACTGAAACTCCTTCACAGCGCTAAAGCAAACAAAGATCTTGGTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGAAACTCCTTCACAGCGCTAAAGCAAACAAAGATCTTGGTCAC  250

seq1  ACTCAGGGTGAATAGTTATATTTTCCACACCTGTGTATCAAGATTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGTGAATAGTTATATTTTCCACACCTGTGTATCAAGATTCAGAA  300

seq1  ATCTGTTCCAACCAAGGCCAGACCCAGCATATGGAAACTTGAAGTTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCCAACCAAGGCCAGACCCAGCATATGGAAACTTGAAGTTACAT  350

seq1  GGGAGAGTGGCACCTCTATTTAGAACATGTCCAGAACTAACTCAACTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTGGCACCTCTATTTAGAACATGTCCAGAACTAACTCAACTCAT  400

seq1  GGGATCTACAGACAGACCTTAGAAATACACATATCAAGAACTACATCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTACAGACAGACCTTAGAAATACACATATCAAGAACTACATCTAT  450

seq1  CCCTCTTCTGCCAGCTCATAACCTCAGCTTAGGCTGATAGATATGTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGCCAGCTCATAACCTCAGCTTAGGCTGATAGATATGTGGAC  500

seq1  TGTGGGACAACTTGGGGAGGAGAAAAAAATAAAAAGTTAATGTGGAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGACAACTTGGGGAGGAGAAAAAAATAAAAAGTTAATGTGGAAGCA  550

seq1  TTTGTTCCAGGCCTTCACTGACTACACTGAGTTCTAGACTATCTGGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCCAGGCCTTCACTGACTACACTGAGTTCTAGACTATCTGGAGGT  600

seq1  GGTTTTGTGAAATTTGTGTCATTTAATCATTTTGCTTCTAAAACAGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTGAAATTTGTGTCATTTAATCATTTTGCTTCTAAAACAGTGGT  650

seq1  TGCCAGACCTAATTTGCAAATATCTCATAGGAAGAGCAATCCCATCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGACCTAATTTGCAAATATCTCATAGGAAGAGCAATCCCATCAGCA  700

seq1  CTGTGTTGAAAGGTCTCCTAAATCCACCACCTGTGCTGGGGCTAAGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTGAAAGGTCTCCTAAATCCACCACCTGTGCTGGGGCTAAGGCTC  750

seq1  CTGTTCTTAGTCCAGCTTTTACCCCCGTGATCTGGATAAAGATGGAATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTAGTCCAGCTTTTACCCCCGTGATCTGGATAAAGATGGAATTC  800

seq1  CTGCCAGGTGGCCTTATCCTCCTGTGTGTTTATAACTTAACTACTCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGTGGCCTTATCCTCCTGTGTGTTTATAACTTAACTACTCCTCC  850

seq1  ACAAACCCACTACGCTGGTCTTAAATGCTCCCAGGCAGATTGTGCTTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCACTACGCTGGTCTTAAATGCTCCCAGGCAGATTGTGCTTGCT  900

seq1  TATAGCAGAGGCCTCGGACTTTAAGCTGTAGTAGGTTCACCTCGTGAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGAGGCCTCGGACTTTAAGCTGTAGTAGGTTCACCTCGTGAGCT  950

seq1  TGTTGGTACAAGCATTGGGAAGGCTTTTTTTTCTCCCTTTAAGTTAAAGC  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTT-GTACAAGCATTGGGAAGGCTTTTTTTTCTCCCTTTAAGTTAAAGC  999

seq1  AGTCA-GAGCCCAATAATTTGCATTCCCTAGAGTCCCTAGATGCCAGTAC  1049
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGAGCCCAATAATTTGCATTCCCTAGAGTCCCTAGATGCCAGTAC  1049

seq1  CCGGTGGGCTAGAAGCTATACTTTTGTTTCCCGCCTAG-AGCTGCACATT  1098
      |||||||||||| |||||||| ||||||||||| |||| ||||||||   
seq2  CCGGTGGGCTAG-AGCTATAC-TTTGTTTCCCG-CTAGAAGCTGCAC---  1093

seq1  AAATTAATTTTGAGGCATTTATGAGTTCTCTTCTTCCTTTTT  1140
        || ||| |||||||| ||||||||  || |||||||||||
seq2  --ATAAATATTGAGGCA-TTATGAGT--TCCTCTTCCTTTTT  1130