BAC Information

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BAC

Clone NameB6Ng01-341C20
Chromosome1 (Build37)
Map Location 14,363,533 - 14,364,636
singlet/doubletsinglet
Overlap genenone
Upstream geneNcoa2, LOC665341, LOC100039812, EG621685, Tram1, Lactb2, Xkr9, LOC100039843, EG433273, LOC100039859, LOC100039869, Eya1
Downstream geneLOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949, LOC100039959, Kcnb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341C20.bB6Ng01-341C20.g
ACCGA124644GA124645
length9851,099
definitionB6Ng01-341C20.b B6Ng01-341C20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttacctgaggaataccaaatggctgagaatcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacatccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagctggtataacaactctggaaatcagtctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctaggc
atatatccagaagatgttccagccgataagaaggacacatgctccactat
gttcatagcagccttatttatattagccagaagctggaaataacccagat
gcccctcaacagaggaatggataatgaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaacaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
agaactcaaatgatatgtactcactgataagtggatattagcccagaatc
ttagaatacccaagatataagatacaatttgctaaatgaaactcaagagg
aacgaagaccaaagtgtggacactttgccccttcttagaattgagaacaa
aacacccatggaaggagttacagagacaaagtttggagctgagatgaaag
gatggaccatctagagactgccaaaataagtatttcttaaaggtattttt
aacagtatttgaaaaatctagccctgttaaaaatgtgttaaagtaataaa
gtaataaaattaataaagtgataagtatccatctgcttaaaaattatttc
tttaaaaaagaaggaaaagggcacagatgttcctcagcctccttcagtca
tggctgattgttgtaaggattttgacgaggagagg
gaattctagacacttaaaatatttaataagattaaaataagtagtatggg
gaaggaagcatttccaggcttgaccaatgtcaatggtgtacagtggtttt
atgaaaacataacaactgtagtaatgcctggaatgtggaacatgttcatg
ggtggcaggaaaggagacccttacaagggctccagagactctggagtgaa
cactgcatatataggaacacagctaatattggttcagccctagatctggg
aagacagataacaggggaaactgatctctagctgcagcttatacagcaat
atgccaaaatgtgcacaaaagggctgaatctgtacagtgaggtttgcagc
aattctttatggatctgactgaggagagcgggtctcagagctagtatcca
gacagaagattctgaaaaagtgattaactagagcaggcaatgagtcgaat
tcaaatagctaggctcccatgaagcttcacggaccaggaaaggtcaggca
cctaaagaggggccagagaggggttctactaagttgctgaatcagttgag
cccacaaagcctagaatccacagagctcaatgtaagtaagactaaaacct
tttccacacataatataagatgttaccaagctgaaactagacccagaata
ttcacagctcttacccatactcaactgtcacaccccctacacacactctc
tattgaaatgcactgctcaaatctgtttgaataagttaatgagaagaatg
gaaacatgttattacaatacgatactaaatgctgaaattgtagttgaaga
ctatgaaagaagattggaatacctctctgttgaacttcagtttcaagaag
ctatgcatctgttgggattctggtcatccagatggtatctcaagaaacat
tttgaatgattttgacccattgtttataaacattcacagtctcctcatgc
ttcatggagctacttagcttatcattcattctggtcttaatggcctgaag
tagagctgtaagcccatggccttgttccaatcaatatactaaagactttc
agttcttaaccatcttatccagtcatccttccacaaatctatataataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14363533_14364636
seq2: B6Ng01-341C20.g_66_1164

seq1  GAATTCTAGACACTTAAAATATTTAATAAGATTAAAATAAGTAGTATGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGACACTTAAAATATTTAATAAGATTAAAATAAGTAGTATGGG  50

seq1  GAAGGAAGCATTTCCAGGCTTGACCAATGTCAATGGTGTACAGTGGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGCATTTCCAGGCTTGACCAATGTCAATGGTGTACAGTGGTTTT  100

seq1  ATGAAAACATAACAACTGTAGTAATGCCTGGAATGTGGAACATGTTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAACATAACAACTGTAGTAATGCCTGGAATGTGGAACATGTTCATG  150

seq1  GGTGGCAGGAAAGGAGACCCTTACAAGGGCTCCAGAGACTCTGGAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGGAAAGGAGACCCTTACAAGGGCTCCAGAGACTCTGGAGTGAA  200

seq1  CACTGCATATATAGGAACACAGCTAATATTGGTTCAGCCCTAGATCTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCATATATAGGAACACAGCTAATATTGGTTCAGCCCTAGATCTGGG  250

seq1  AAGACAGATAACAGGGGAAACTGATCTCTAGCTGCAGCTTATACAGCAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATAACAGGGGAAACTGATCTCTAGCTGCAGCTTATACAGCAAT  300

seq1  ATGCCAAAATGTGCACAAAAGGGCTGAATCTGTACAGTGAGGTTTGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAATGTGCACAAAAGGGCTGAATCTGTACAGTGAGGTTTGCAGC  350

seq1  AATTCTTTATGGATCTGACTGAGGAGAGCGGGTCTCAGAGCTAGTATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTATGGATCTGACTGAGGAGAGCGGGTCTCAGAGCTAGTATCCA  400

seq1  GACAGAAGATTCTGAAAAAGTGATTAACTAGAGCAGGCAATGAGTCGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGATTCTGAAAAAGTGATTAACTAGAGCAGGCAATGAGTCGAAT  450

seq1  TCAAATAGCTAGGCTCCCATGAAGCTTCACGGACCAGGAAAGGTCAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGCTAGGCTCCCATGAAGCTTCACGGACCAGGAAAGGTCAGGCA  500

seq1  CCTAAAGAGGGGCCAGAGAGGGGTTCTACTAAGTTGCTGAATCAGTTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAGGGGCCAGAGAGGGGTTCTACTAAGTTGCTGAATCAGTTGAG  550

seq1  CCCACAAAGCCTAGAATCCACAGAGCTCAATGTAAGTAAGACTAAAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAAGCCTAGAATCCACAGAGCTCAATGTAAGTAAGACTAAAACCT  600

seq1  TTTCCACACATAATATAAGATGTTACCAAGCTGAAACTAGACCCAGAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACACATAATATAAGATGTTACCAAGCTGAAACTAGACCCAGAATA  650

seq1  TTCACAGCTCTTACCCATACTCAACTGTCACACCCCCTACACACACTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCTCTTACCCATACTCAACTGTCACACCCCCTACACACACTCTC  700

seq1  TATTGAAATGCACTGCTCAAATCTGTTTGAATAAGTTAATGAGAAGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAATGCACTGCTCAAATCTGTTTGAATAAGTTAATGAGAAGAATG  750

seq1  GAAACATGTTATTACAATACGATACTAAATGCTGAAATTGTAGTTGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATGTTATTACAATACGATACTAAATGCTGAAATTGTAGTTGAAGA  800

seq1  CTATGAAAGAAGATTGGAAATACCTCTCTGTTGAACTTCAGTTTCAAGAA  850
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTATGAAAGAAGATTGG-AATACCTCTCTGTTGAACTTCAGTTTCAAGAA  849

seq1  GCTATGCATCTGTTGGGATTCTGGTCATCCAGATGGTATCTCAAGAAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGCATCTGTTGGGATTCTGGTCATCCAGATGGTATCTCAAGAAACA  899

seq1  TTTTGAATGATTTTGACCCATTGTTTATAAACATTCACAGTCTCCTTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTGAATGATTTTGACCCATTGTTTATAAACATTCACAGTCTCC-TCAT  948

seq1  GCTTTCATGGAGCTACTTAGCTTATCATTCATTCTGGTCTTAATGGCCTG  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-TTCATGGAGCTACTTAGCTTATCATTCATTCTGGTCTTAATGGCCTG  997

seq1  AAAGTAGAGCTGTAAAGCCCAATGGCC-TGTTCCAATTCATATACTAAAG  1049
       |||||||||||| |||||| |||||| |||||||||  |||||||||||
seq2  -AAGTAGAGCTGT-AAGCCC-ATGGCCTTGTTCCAATCAATATACTAAAG  1044

seq1  ACTTTCAGTTTCTAAACCATC-TATTCAGTCATTCCTTCCACAAATCT-T  1097
      |||||||| |||| ||||||| ||| |||||| ||||||||||||||| |
seq2  ACTTTCAG-TTCTTAACCATCTTATCCAGTCA-TCCTTCCACAAATCTAT  1092

seq1  ATAATAA  1104
      |||||||
seq2  ATAATAA  1099