BAC Information

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BAC

Clone NameB6Ng01-341F11
Chromosome1 (Build37)
Map Location 18,778,938 - 18,780,164
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
Downstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341F11.bB6Ng01-341F11.g
ACCGA124751GA124752
length1,2041,167
definitionB6Ng01-341F11.b B6Ng01-341F11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttaaatatgaagaaaggggtgcaacttctttggtggttacagaa
aatgtgtcaatataaatatacttcctatgagttaggtagacctgacatgc
ggctagtaggattccatatggaaatgagtgatttaaaccaggataatggt
ggagagtataaagaacacaggtgggtttaggatttatttagaatattaaa
tagatatcatttcagagttgtaaaggtgtgagttaggggacgcattcaag
tatgcttcttgggtacctggtttgagtatcagcgtcagtcattctcagtg
acagagcattataaaatgaaaactgaaaatcttcaggggaaaaagatata
taattcagatttcattgtatcatatccgaaaaataagagagacatctgag
tggcaaccttaactaaaatctagattttggggtttgtggtaatcaatcag
caactcaggtgaaagatgggtcaaatcattatttgtatataattctatgg
ctagaaagtggtattatatcctatgtatgacatatgtatattcatattca
tatccatatccacatacacataaattattcatgccaaacacgttgggtca
aattgtgttgctttttggaggaaaagttttcaatgaagattgttgttgga
aacatttgactgagaagagctgagaagcacatccaggaagatacatcagt
ctttcttggtatcccagagtcttactttagtagatatccaaaagatgcag
tatgcttagaaacgagttttttatttttttagtagttaattaattaacta
attaattaatttttttgaaaatagattcttttcccttataatacatcctg
acaacagtttcccttccctcctctcctctcatttcccttctacctcccct
ctaccccagatatactcctctccacttccttaaaaaccagcccccagaga
tgccaccaaatacacatagcaatagagtagacgaggcattcacccttata
ttctgaggcttggcaaggcaacctcacttagagtcaaggaccagaaatga
ttgcattttattagaacaattattctacaaccattcagatagaggtttag
ccttttaatacgattctttctgtattttttttcgaagctatttgagaaag
cctagaagacctacttaggtctttggacggcacgttcattgctggacact
ggtg

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaaccaccctgagat
tccacctcacaccaatcagaatggctaagatcaaaaattcaggtgacagc
agatactggcatggatgtggagaaagaggaacagtcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatctgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatatctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtaatactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcgtgagtgaggtaacacattcacaaa
ggaacccacacaatatgtactcactgataagtggatattagcccaaaccc
taggatacccaagatataagatacaacttcctaaacacatgaaactcaag
aaaaatgaagactgaagtttggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagaaactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
gggacccagatgtagctgtctcttgtgagactatgctggggcctagcaaa
cacagaagtggatgctcatggtcagctaatggatggatccacagggctcc
caatggagagctagaagaaagtacccaaggagctaaagtgatctgcaacc
ctatagtggatcaacatatgactacagtacccgggagctctggctctagc
tgcattgtatcaaagatgcctagtcgccattaccctttaagaagctcatg
aactcactttatgcccagaactggacgcaggccaaagggcgagatgctgc
ttcggcctcaccgtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18778938_18780164
seq2: B6Ng01-341F11.b_45_1248 (reverse)

seq1  CACCAGTGTCCACTGCATAGCACACTACCCTTCAAAAGAAACTTAAAGTT  50
      ||||||||||||  |||  | ||  | || | |||   | || |||    
seq2  CACCAGTGTCCA--GCAATGAAC-GTGCCGTCCAA---AGACCTAA---G  41

seq1  TAGTTTCCTTTTCTAGGC-TTCTCAAAATAAGCTTCTGAAAAAAAAAAAA  99
      |||     | |||||||| ||||||||   ||||||    |||||||| |
seq2  TAG----GTCTTCTAGGCTTTCTCAAA--TAGCTTC---GAAAAAAAATA  82

seq1  CAGAAAAAAATCCTTTATTAAAA-GCT-AACCTCTA-CTGAATGGTTTGT  146
      ||| ||| ||||   |||||||| ||| |||||||| |||||||| ||||
seq2  CAG-AAAGAATC--GTATTAAAAGGCTAAACCTCTATCTGAATGG-TTGT  128

seq1  AG-ATAATTGTTCTA--TAAATGCAATCATTTCTTGGTCCTTGGAACTCT  193
      || ||||||||||||   ||||||||||||||| |||||||||  |||||
seq2  AGAATAATTGTTCTAATAAAATGCAATCATTTC-TGGTCCTTG--ACTCT  175

seq1  AGGTGA-GTTGCCTTGCCCAGCCTCAAGATATAAGGGTGATTGCCTCGTC  242
      | |||| ||||||||||| |||||||  |||||||||||| |||||||||
seq2  AAGTGAGGTTGCCTTGCCAAGCCTCAGAATATAAGGGTGAATGCCTCGTC  225

seq1  TTACTCTATTTTGCTTTGTTGTATTTGGTTGCCATCTCTTGGGGGCTGGT  292
       |||||||  ||||| || ||||||||| || |||||| |||||||||||
seq2  -TACTCTA--TTGCTATG-TGTATTTGG-TGGCATCTC-TGGGGGCTGGT  269

seq1  TTTTAAGGAAGTGGAGAGGGAGTATATCTGGGGTAGAGGGGAGGTAGAAG  342
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTAAGGAAGTGGAGA-GGAGTATATCTGGGGTAGAGGGGAGGTAGAAG  318

seq1  GGAAATGAGAGGAGAGGAGGGAAGGGAAACTGTTGTCAGGATGTATTATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGAGAGGAGAGGAGGGAAGGGAAACTGTTGTCAGGATGTATTATA  368

seq1  AGGGAAAAGAATCTATTTTC-AAAAAATTAATTAATTAGTTAATTAATTA  441
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGGAAAAGAATCTATTTTCAAAAAAATTAATTAATTAGTTAATTAATTA  418

seq1  ACTACTAAAAAAATAAAAAACTCGTTTCTAAGCATACTGCATCTTTTGGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTAAAAAAATAAAAAACTCGTTTCTAAGCATACTGCATCTTTTGGA  468

seq1  TATCTACTAAAGTAAGACTCTGGGATACCAAGAAAGACTGATGTATCTTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACTAAAGTAAGACTCTGGGATACCAAGAAAGACTGATGTATCTTC  518

seq1  CTGGATGTGCTTCTCAGCTCTTCTCAGTCAAATGTTTCCAACAACAATCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTGCTTCTCAGCTCTTCTCAGTCAAATGTTTCCAACAACAATCT  568

seq1  TCATTGAAAACTTTTCCTCCAAAAAGCAACACAATTTGACCCAACGTGTT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAAAACTTTTCCTCCAAAAAGCAACACAATTTGACCCAACGTGTT  618

seq1  TGGCATGAATAATTTATGTGTATGTGGATATGGATATGAATATGAATATA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGAATAATTTATGTGTATGTGGATATGGATATGAATATGAATATA  668

seq1  CATATGTCATACATAGGATATAATACCACTTTCTAGCCATAGAATTATAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTCATACATAGGATATAATACCACTTTCTAGCCATAGAATTATAT  718

seq1  ACAAATAATGATTTGACCCATCTTTCACCTGAGTTGCTGATTGATTACCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAATGATTTGACCCATCTTTCACCTGAGTTGCTGATTGATTACCA  768

seq1  CAAACCCCAAAATCTAGATTTTAGTTAAGGTTGCCACTCAGATGTCTCTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCAAAATCTAGATTTTAGTTAAGGTTGCCACTCAGATGTCTCTC  818

seq1  TTATTTTTCGGATATGATACAATGAAATCTGAATTATATATCTTTTTCCC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCGGATATGATACAATGAAATCTGAATTATATATCTTTTTCCC  868

seq1  CTGAAGATTTTCAGTTTTCATTTTATAATGCTCTGTCACTGAGAATGACT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGATTTTCAGTTTTCATTTTATAATGCTCTGTCACTGAGAATGACT  918

seq1  GACGCTGATACTCAAACCAGGTACCCAAGAAGCATACTTGAATGCGTCCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTGATACTCAAACCAGGTACCCAAGAAGCATACTTGAATGCGTCCC  968

seq1  CTAACTCACACCTTTACAACTCTGAAATGATATCTATTTAATATTCTAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCACACCTTTACAACTCTGAAATGATATCTATTTAATATTCTAAA  1018

seq1  TAAATCCTAAACCCACCTGTGTTCTTTATACTCTCCACCATTATCCTGGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTAAACCCACCTGTGTTCTTTATACTCTCCACCATTATCCTGGT  1068

seq1  TTAAATCACTCATTTCCATATGGAATCCTACTAGCCGCATGTCAGGTCTA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCACTCATTTCCATATGGAATCCTACTAGCCGCATGTCAGGTCTA  1118

seq1  CCTAACTCATAGGAAGTATATTTATATTGACACATTTTCTGTAACCACCA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTCATAGGAAGTATATTTATATTGACACATTTTCTGTAACCACCA  1168

seq1  AAGAAGTTGCACCCCTTTCTTCATATTTAAGAATTC  1227
      ||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTGCACCCCTTTCTTCATATTTAAGAATTC  1204


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