BAC Information

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BAC

Clone NameB6Ng01-341G17
Chromosome1 (Build37)
Map Location 187,135,660 - 187,272,743
singlet/doubletdoublet
Overlap geneIars2, Bpnt1, Eprs, 9630028B13Rik
Upstream geneEG433387, EG629032, LOC666714, Hlx1, Mosc1, Mosc2, LOC100039079, C130074G19Rik, Mark1
Downstream geneLOC100039138, Slc30a10, 5033404E19Rik, LOC677785, Lyplal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341G17.bB6Ng01-341G17.g
ACCGA124804GA124805
length1,116891
definitionB6Ng01-341G17.b B6Ng01-341G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(187,135,660 - 187,136,784)(187,271,855 - 187,272,743)
sequence
gaattctttataatgaaactgaggtcatgctttcaaatagtgtaaaagaa
tttcttaaggtttgtccttgcaaactcaagaattctctttattttattaa
caatattctatacttcagcacacagttgacttatgacctaaagaccagta
taaattactgttgataaaagtgggtgaaaccacttatcactctgtagtct
gtttccattttaatgctgtatttcacagagcaataagtcagaccatacta
gaactttgtactcagaggccttatctgtcacgcattccgtgttcctgctt
cggtttccatcagggaaaacccaggcagtggggcagctctgacggcagcc
aatcacccgggctctgctatcagcagcatgtgctatttagccgagaagca
ggaagcactcaggacttccaggtaaggagccgctgctgtcctcttggtcc
tctgttctctctttataagcaaaaggcacaggacaggatctctgctggaa
gtgaccgtggaaagaacgaggtaagaggctaagagttcctgtctgttgtc
taaatgtgacaaagaacacggtggagcttcagaaggaagagcctgttccc
accaagtccaatgcgcaggctgtagaggcagcaggcaacgatttaggatg
ctttctttacttactgaacataaagtccacaggtttccagaggctggctc
taagctaccttagcgcgtaagtcaacagtgctggtgacaacatacgtcta
aaataaggaaagaaacgccatcaacagcttcctgtcttctctaggtggcc
aatgtttctaaattttatccattttatgttaaaaaatacttgttgccagg
aagtggtggttcacgcctttaatcccagcacttgggaggcagaggtaggt
ggatttctgagtttgagacccgcctggtctacagagtgagttccaggaca
gccagagctatacagagaaaccctgtctccgaaaaaaaaaacaaaacaaa
acttgtttcattaaccagggactagattgccaccttaattaacggggatt
tatattacagatcagaaatggccaatgatattacattaagttcttgagaa
agaagcgacataagct
gaattctcagcgattcctgagggctcagagacatcgattcctgagagctc
agagacatcgattcctgagggctcagagacatcgattcctgagggctcag
agacatcgattcctgagggctcagagacagcgattcctgagggctcagag
acaagctgccctgcctcctgctccatgacttcttcactgggacacactgc
gtcctcgaagtctcagctcaaaccagcccttcctttcctgaatggcgttt
gtcaggtgttcctcacagcaaagagaagaacaatgaataggggaactctt
gtactcaaggcctgcctgtggaggtgtgggaatgatttgtgactggggca
agaagaggagagcattagaggccaaaccaggaagttcggaaacacctccc
attcagagttcaacactacatactgtatcatgtgaagtctgatgggggca
ggggggggcaagggggggaagtagtcagctgtgagacttccaattcaaat
gaaggagaaagaatactcaaagtttaaaaatatatatatagaaaatgcca
ccttggtgtttattctaaaccatagccttaagggcaagtaaaattctgta
ttgtttcataatgtacaaaaagattgtatgtactattttgaagctgtcag
aactaactcacacacacatctttctccactgcttggacttaccttaaact
ttagactacgtgaaaatgaaactgtccattgtccaggaaaatatgagaaa
tagctgttctagtttagaaccctctgttgggctgagtgtggcagtgaatg
cttgcacaccccagcccttgggaggtaagatagaagggtaccagctccag
ggcagcctgttcttcccaaagaggctcacaccatcctagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_187135660_187136784
seq2: B6Ng01-341G17.b_46_1161

seq1  GAATTCTTTATAATGAAACTGAGGTCATGCTTTCAAATAGTGTAAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAATGAAACTGAGGTCATGCTTTCAAATAGTGTAAAAGAA  50

seq1  TTTCTTAAGGTTTGTCCTTGCAAACTCAAGAATTCTCTTTATTTTATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGGTTTGTCCTTGCAAACTCAAGAATTCTCTTTATTTTATTAA  100

seq1  CAATATTCTATACTTCAGCACACAGTTGACTTATGACCTAAAGACCAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTCTATACTTCAGCACACAGTTGACTTATGACCTAAAGACCAGTA  150

seq1  TAAATTACTGTTGATAAAAGTGGGTGAAACCACTTATCACTCTGTAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACTGTTGATAAAAGTGGGTGAAACCACTTATCACTCTGTAGTCT  200

seq1  GTTTCCATTTTAATGCTGTATTTCACAGAGCAATAAGTCAGACCATACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCATTTTAATGCTGTATTTCACAGAGCAATAAGTCAGACCATACTA  250

seq1  GAACTTTGTACTCAGAGGCCTTATCTGTCACGCATTCCGTGTTCCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTGTACTCAGAGGCCTTATCTGTCACGCATTCCGTGTTCCTGCTT  300

seq1  CGGTTTCCATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTTCCATCAGGGAAAACCCAGGCAGTGGGGCAGCTCTGACGGCAGCC  350

seq1  AATCACCCGGGCTCTGCTATCAGCAGCATGTGCTATTTAGCCGAGAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACCCGGGCTCTGCTATCAGCAGCATGTGCTATTTAGCCGAGAAGCA  400

seq1  GGAAGCACTCAGGACTTCCAGGTAAGGAGCCGCTGCTGTCCTCTTGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCACTCAGGACTTCCAGGTAAGGAGCCGCTGCTGTCCTCTTGGTCC  450

seq1  TCTGTTCTCTCTTTATAAGCAAAAGGCACAGGACAGGATCTCTGCTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTCTCTTTATAAGCAAAAGGCACAGGACAGGATCTCTGCTGGAA  500

seq1  GTGACCGTGGAAAGAACGAGGTAAGAGGCTAAGAGTTCCTGTCTGTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCGTGGAAAGAACGAGGTAAGAGGCTAAGAGTTCCTGTCTGTTGTC  550

seq1  TAAATGTGACAAAGAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTGACAAAGAACACGGTGGAGCTTCAGAAGGAAGAGCCTGTTCCC  600

seq1  ACCAAGTCCAATGCGCAGGCTGTAGAGGCAGCAGGCAACGATTTAGGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTCCAATGCGCAGGCTGTAGAGGCAGCAGGCAACGATTTAGGATG  650

seq1  CTTTCTTTACTTACTGAACATAAAGTCCACAGGTTTCCAGAGGCTGGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTACTTACTGAACATAAAGTCCACAGGTTTCCAGAGGCTGGCTC  700

seq1  TAAGCTACCTTAGCGCGTAAGTCAACAGTGCTGGTGACAACATACGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTACCTTAGCGCGTAAGTCAACAGTGCTGGTGACAACATACGTCTA  750

seq1  AAATAAGGAAAGAAACGCCATCAACAGCTTCCTGTCTTCTCTAGGTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGAAAGAAACGCCATCAACAGCTTCCTGTCTTCTCTAGGTGGCC  800

seq1  AATGTTTCTAAATTTTATCCATTTTATGTTAAAAAATACTTGTTGCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTAAATTTTATCCATTTTATGTTAAAAAATACTTGTTGCCAGG  850

seq1  AAGTGGTGGTTCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGTAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTGGTTCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGTAGGT  900

seq1  GGATTTCTGAGTTTGAGACCCGCCTGGTCTACAGAGTGAGTTCCAGGACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTGAGTTTGAGACCCGCCTGGTCTACAGAGTGAGTTCCAGGACA  950

seq1  GCCAGAGCTATACAGAGAAACCCTGTCTCCGAAAAAAAAAACAAAACAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGCTATACAGAGAAACCCTGTCTCCGAAAAAAAAAACAAAACAAA  1000

seq1  ACTTGTTTTCATTAACCAGGGACTAGATTGCCACCTAAATTATACGGGGA  1050
      ||||| |||||||||||||||||||||||||||||| ||||| |||||||
seq2  ACTTG-TTTCATTAACCAGGGACTAGATTGCCACCTTAATTA-ACGGGGA  1048

seq1  -TTATATTACAGATTCAGGAAATGGCCAATGATATTAACATTAAAAGTTC  1099
       |||||||||||| ||| |||||||||||||||||| |||||  ||||||
seq2  TTTATATTACAGA-TCA-GAAATGGCCAATGATATT-ACATT--AAGTTC  1093

seq1  TTGAGGAAAAGAAGCGAACATAAGCT  1125
      |||||  ||||||||| |||||||||
seq2  TTGAG--AAAGAAGCG-ACATAAGCT  1116

seq1: chr1_187271855_187272743
seq2: B6Ng01-341G17.g_68_958 (reverse)

seq1  GTCTAGGATGGTGTGAGCCTCTTTGTGTAGAACAGGCTGACCTGGAGCTT  50
      ||||||||||||||||||||||||| | ||||||||||| ||||||||| 
seq2  GTCTAGGATGGTGTGAGCCTCTTTGGGAAGAACAGGCTGCCCTGGAGCTG  50

seq1  GTGACCTTTCTATCTTTGCCTCCCAAGGGCTGGGGTGTGCAAGCATTCAC  100
      || ||| ||||||| || ||||||||||||||||||||||||||||||||
seq2  GT-ACCCTTCTATC-TTACCTCCCAAGGGCTGGGGTGTGCAAGCATTCAC  98

seq1  TGCCACACTCAG-CCAACAG-GGGTTCTAACTAAGAACAGCTATTTCTCA  148
      |||||||||||| ||||||| |||||||||   |||||||||||||||||
seq2  TGCCACACTCAGCCCAACAGAGGGTTCTAAACTAGAACAGCTATTTCTCA  148

seq1  TATTTTCCTGGACAATGGACAGTTTCATTTTCACGTAGTCTAAAGTTTAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCTGGACAATGGACAGTTTCATTTTCACGTAGTCTAAAGTTTAA  198

seq1  GGTAAGTCC-AGCAGTGGAGAAAGATGTGTGTGTGAGTTAGTTCTGACAG  247
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTCCAAGCAGTGGAGAAAGATGTGTGTGTGAGTTAGTTCTGACAG  248

seq1  CTTC-AAATAGTACATACAATCTTTTTGTACATTATGAAACAATACAGAA  296
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATAGTACATACAATCTTTTTGTACATTATGAAACAATACAGAA  298

seq1  TTTTACTTGCCCTTAAGGCTATGGTTTAGAATAAACACCAAGGTGGCATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTGCCCTTAAGGCTATGGTTTAGAATAAACACCAAGGTGGCATT  348

seq1  TTCTATATATATATTTTTAAACTTTGAGTATTCTTTCTCCTTCATTTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATATATATTTTTAAACTTTGAGTATTCTTTCTCCTTCATTTGAA  398

seq1  TTGGAAGTCTCACAGCTGACTACTTCCCCCCCTTGCCCCCCCCTGCCCCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTCTCACAGCTGACTACTTCCCCCCCTTGCCCCCCCCTGCCCCC  448

seq1  ATCAGACTTCACATGATACAGTATGTAGTGTTGAACTCTGAATGGGAGGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTTCACATGATACAGTATGTAGTGTTGAACTCTGAATGGGAGGT  498

seq1  GTTTCCGAACTTCCTGGTTTGGCCTCTAATGCTCTCCTCTTCTTGCCCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCGAACTTCCTGGTTTGGCCTCTAATGCTCTCCTCTTCTTGCCCCA  548

seq1  GTCACAAATCATTCCCACACCTCCACAGGCAGGCCTTGAGTACAAGAGTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAATCATTCCCACACCTCCACAGGCAGGCCTTGAGTACAAGAGTT  598

seq1  CCCCTATTCATTGTTCTTCTCTTTGCTGTGAGGAACACCTGACAAACGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTCATTGTTCTTCTCTTTGCTGTGAGGAACACCTGACAAACGCC  648

seq1  ATTCAGGAAAGGAAGGGCTGGTTTGAGCTGAGACTTCGAGGACGCAGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGAAAGGAAGGGCTGGTTTGAGCTGAGACTTCGAGGACGCAGTGT  698

seq1  GTCCCAGTGAAGAAGTCATGGAGCAGGAGGCAGGGCAGCTTGTCTCTGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGTGAAGAAGTCATGGAGCAGGAGGCAGGGCAGCTTGTCTCTGAG  748

seq1  CCCTCAGGAATCGCTGTCTCTGAGCCCTCAGGAATCGATGTCTCTGAGCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGAATCGCTGTCTCTGAGCCCTCAGGAATCGATGTCTCTGAGCC  798

seq1  CTCAGGAATCGATGTCTCTGAGCCCTCAGGAATCGATGTCTCTGAGCTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAATCGATGTCTCTGAGCCCTCAGGAATCGATGTCTCTGAGCTCT  848

seq1  CAGGAATCGATGTCTCTGAGCCCTCAGGAATCGCTGAGAATTC  889
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCGATGTCTCTGAGCCCTCAGGAATCGCTGAGAATTC  891