BAC Information

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BAC

Clone NameB6Ng01-341G24
Chromosome1 (Build37)
Map Location 149,740,022 - 149,878,747
singlet/doubletdoublet
Overlap genenone
Upstream geneB830045N13Rik
Downstream geneLOC100042792, LOC435647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341G24.bB6Ng01-341G24.g
ACCGA124818GA124819
length8981,130
definitionB6Ng01-341G24.b B6Ng01-341G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,740,022 - 149,740,919)(149,877,600 - 149,878,747)
sequence
gaattctattgttgtacatatctacgttttaaaattcacagtaaccaaac
gttggtaaatattaatattgaacaatcaattttttctttaaaatagtagg
catgtccatgtattccttttcaacctgcctctcagtctttgctttcatgt
cttatccaatagtctaggccttcattttacttaattattacaacattgaa
acctatattcgtgatgatttttctgttaatcaaccccccacacatgtgtg
tgcatgaaagctcacactgttatttaagactggtatagaattcatagctc
tatcaattgggtagataatgaagcctttactgttgtttagaacgataaag
aaaagtacatattagaagaggtaaaaaaccctacattttggatatattaa
aatgacattattaaatgttactcaagtagaatgccacagtagtattcttg
tagaaggaattgaaaactaaataatattttcaggagaaccattgttaatt
gtgtcacaataaaatgtagataatatctgcattattgtagcacagcagtt
cctacttcactgtgctgcccagaggaatttgatttgaagaagaaagaaaa
aaaataagaccctaggcaaaaacccacaaatacataggccaaaagccagt
aaggagaaggaaatgctacatccactcaggatgagacatagtttataatc
cattgagttgtttaagtggaaagtagcacaaaaaatgttatagtcgcctt
aaaataccaccattttcatttcgtaaatctacaaaaatccagagggcact
tatatctataattcagaaatgtgagatgtcacagccacccagctgtttgc
tgcaataagctacatagggttagagttaggattttgttgttgttgttg

gaattctttctgctgactctggatgacagctgaagcagccagtgcaattg
caggaaccagattctgtggtagactacaaagaggcccatttttctttctt
tcttttttttttcttaaatcatttatttattttttatttatttatctatt
taattttaaactccagattttattccccttccagtccatcctctgactgt
tcctcatcctatatttttctaccttgtctctattgaggatatctccagtc
cccaacgcccaacccccacctcaccagacatctaaactccctgagaaact
taaaaaaaaaaatcagactcatttgagtggttttgttcccagcaaactca
acagaaatcacaactgtcaaatcaaaataagaattaacatgataataaga
atagcaaaagttagaaggtcttgaacctcctgcaagccctaggcttttgt
ttgggaattttggtactcttgtctattcattctgttcttggtttagtgac
agcatctttctttgtagcttgatttcaacaacacattgacaccagtcctc
aaacccatctggcatctctcctaatcactacatttcaatgaacagtattt
gtaagcagtcagataaggtattattacttaacactgaaattcattatatt
ttatttctgaatagtagctacactgaagtcaaatgattttgttgactcat
tcaaatgtacttaaattaatggaacaagcagatacttcatccaaattgcc
tagaataattaaatgttatttctttggcactgataaaaaaacgaatttct
ttttgtctataggaactttctgcaataggaaaacattgtttttttttttt
acatttttttcttttattcaacaaagcacaaaatacaatgtttgagtgtg
aagagtcctatagagcttgaagcagactcccgtgccacatactgttgtac
agtttttaccctgctacactctcaaatatcaggagatgttgaaaaacagt
ctttcgtttagtctgagaacacttgctatctttccatattcatatcagct
gcatcaccaatcaattttgcagaaggcctgactgctagagacactatgat
cctagaatggcgatgtagaacagttttcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_149740022_149740919
seq2: B6Ng01-341G24.b_43_940

seq1  GAATTCTATTGTTGTACATATCTACGTTTTAAAATTCACAGTAACCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGTTGTACATATCTACGTTTTAAAATTCACAGTAACCAAAC  50

seq1  GTTGGTAAATATTAATATTGAACAATCAATTTTTTCTTTAAAATAGTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAAATATTAATATTGAACAATCAATTTTTTCTTTAAAATAGTAGG  100

seq1  CATGTCCATGTATTCCTTTTCAACCTGCCTCTCAGTCTTTGCTTTCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCATGTATTCCTTTTCAACCTGCCTCTCAGTCTTTGCTTTCATGT  150

seq1  CTTATCCAATAGTCTAGGCCTTCATTTTACTTAATTATTACAACATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCAATAGTCTAGGCCTTCATTTTACTTAATTATTACAACATTGAA  200

seq1  ACCTATATTCGTGATGATTTTTCTGTTAATCAACCCCCCACACATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATATTCGTGATGATTTTTCTGTTAATCAACCCCCCACACATGTGTG  250

seq1  TGCATGAAAGCTCACACTGTTATTTAAGACTGGTATAGAATTCATAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAAAGCTCACACTGTTATTTAAGACTGGTATAGAATTCATAGCTC  300

seq1  TATCAATTGGGTAGATAATGAAGCCTTTACTGTTGTTTAGAACGATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTGGGTAGATAATGAAGCCTTTACTGTTGTTTAGAACGATAAAG  350

seq1  AAAAGTACATATTAGAAGAGGTAAAAAACCCTACATTTTGGATATATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACATATTAGAAGAGGTAAAAAACCCTACATTTTGGATATATTAA  400

seq1  AATGACATTATTAAATGTTACTCAAGTAGAATGCCACAGTAGTATTCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACATTATTAAATGTTACTCAAGTAGAATGCCACAGTAGTATTCTTG  450

seq1  TAGAAGGAATTGAAAACTAAATAATATTTTCAGGAGAACCATTGTTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAATTGAAAACTAAATAATATTTTCAGGAGAACCATTGTTAATT  500

seq1  GTGTCACAATAAAATGTAGATAATATCTGCATTATTGTAGCACAGCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACAATAAAATGTAGATAATATCTGCATTATTGTAGCACAGCAGTT  550

seq1  CCTACTTCACTGTGCTGCCCAGAGGAATTTGATTTGAAGAAGAAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTCACTGTGCTGCCCAGAGGAATTTGATTTGAAGAAGAAAGAAAA  600

seq1  AAAATAAGACCCTAGGCAAAAACCCACAAATACATAGGCCAAAAGCCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGACCCTAGGCAAAAACCCACAAATACATAGGCCAAAAGCCAGT  650

seq1  AAGGAGAAGGAAATGCTACATCCACTCAGGATGAGACATAGTTTATAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAGGAAATGCTACATCCACTCAGGATGAGACATAGTTTATAATC  700

seq1  CATTGAGTTGTTTAAGTGGAAAGTAGCACAAAAAATGTTATAGTCGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGTTGTTTAAGTGGAAAGTAGCACAAAAAATGTTATAGTCGCCTT  750

seq1  AAAATACCACCATTTTCATTTCGTAAATCTACAAAAATCCAGAGGGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCACCATTTTCATTTCGTAAATCTACAAAAATCCAGAGGGCACT  800

seq1  TATATCTATAATTCAGAAATGTGAGATGTCACAGCCACCCAGCTGTTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATAATTCAGAAATGTGAGATGTCACAGCCACCCAGCTGTTTGC  850

seq1  TGCAATAAGCTACATAGGGTTAGAGTTAGGATTTTGTTGTTGTTGTTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAAGCTACATAGGGTTAGAGTTAGGATTTTGTTGTTGTTGTTG  898


seq1: chr1_149877600_149878747
seq2: B6Ng01-341G24.g_63_1192 (reverse)

seq1  TGGAAAACTGCT-TTCA-CACCATTCTATGATTTCATAGTGGTCTTCCTC  48
      |||||||||| | | || | |||||||| ||  ||||||| ||||  || 
seq2  TGGAAAACTGTTCTACATCGCCATTCTAGGA--TCATAGT-GTCT--CT-  44

seq1  AGCAGTCAG--CCTCTGCAAAAATTGATTGTGTGATGCAGCTGATTATGA  96
      |||||||||  | ||||| ||||||||||| ||||||||||||| |||||
seq2  AGCAGTCAGGCCTTCTGC-AAAATTGATTG-GTGATGCAGCTGA-TATGA  91

seq1  ATTATGAAAAAGATAAGCAGGTGTTCCTTCAGACCTAAAACGAAAGGCTG  146
      | ||||  |||||| |||| ||||||  ||||||   ||||||||| || 
seq2  A-TATG-GAAAGAT-AGCAAGTGTTC--TCAGAC--TAAACGAAAGACT-  133

seq1  GTTTTTCAAACATTCCTCCTTGGATATTTGGAGAAGTGTAGCAGGGTAAA  196
      ||||||| |||||  |||||  ||||||| ||| ||||||||||||||||
seq2  GTTTTTC-AACAT--CTCCT--GATATTT-GAG-AGTGTAGCAGGGTAAA  176

seq1  AACTGTACAAACAGTATGTGGCACGGGAGTCCTGCTTTCAAGCTCTATAG  246
      |||||||| ||||||||||||||||||||| |||| ||||||||||||||
seq2  AACTGTAC-AACAGTATGTGGCACGGGAGT-CTGC-TTCAAGCTCTATAG  223

seq1  GACTCTTCACACTCAAACATTGTATTTTGTGCTTTGTTGAATAAAAGAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCACACTCAAACATTGTATTTTGTGCTTTGTTGAATAAAAGAAA  273

seq1  AAAATGT-AAAAAAAAAAACAATGTTTTCCTATTGCAG-AAGTTCCTATA  344
      ||||||| |||||||||||||||||||||||||||||| |||||||||||
seq2  AAAATGTAAAAAAAAAAAACAATGTTTTCCTATTGCAGAAAGTTCCTATA  323

seq1  GACAAAA--GAATTCG-TTTTTTATCAGTGCCAAAGAAATAACATTTAAT  391
      |||||||   |||||| |||||||||||||||||||||||||||||||||
seq2  GACAAAAAGAAATTCGTTTTTTTATCAGTGCCAAAGAAATAACATTTAAT  373

seq1  TATTCTAGGCAATTTGGATGAAGTATCTGCTTGTTCCATTAATTTAAGTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGGCAATTTGGATGAAGTATCTGCTTGTTCCATTAATTTAAGTA  423

seq1  CATTTGAATGAGTCAACAAAATCATTTGACTTCAGTGTAGCTACTATTCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAATGAGTCAACAAAATCATTTGACTTCAGTGTAGCTACTATTCA  473

seq1  GAAATAAAATATAATGAATTTCAGTGTTAAGTAATAATACCTTATCTGAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAATATAATGAATTTCAGTGTTAAGTAATAATACCTTATCTGAC  523

seq1  TGCTTACAAATACTGTTCATTGAAATGTAGTGATTAGGAGAGATGCCAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACAAATACTGTTCATTGAAATGTAGTGATTAGGAGAGATGCCAGA  573

seq1  TGGGTTTGAGGACTGGTGTCAATGTGTTGTTGAAATCAAGCTACAAAGAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGAGGACTGGTGTCAATGTGTTGTTGAAATCAAGCTACAAAGAA  623

seq1  AGATGCTGTCACTAAACCAAGAACAGAATGAATAGACAAGAGTACCAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGTCACTAAACCAAGAACAGAATGAATAGACAAGAGTACCAAAA  673

seq1  TTCCCAAACAAAAGCCTAGGGCTTGCAGGAGGTTCAAGACCTTCTAACTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAACAAAAGCCTAGGGCTTGCAGGAGGTTCAAGACCTTCTAACTT  723

seq1  TTGCTATTCTTATTATCATGTTAATTCTTATTTTGATTTGACAGTTGTGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTCTTATTATCATGTTAATTCTTATTTTGATTTGACAGTTGTGA  773

seq1  TTTCTGTTGAGTTTGCTGGGAACAAAACCACTCAAATGAGTCTGATTTTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGAGTTTGCTGGGAACAAAACCACTCAAATGAGTCTGATTTTT  823

seq1  TTTTTTAAGTTTCTCAGGGAGTTTAGATGTCTGGTGAGGTGGGGGTTGGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAGTTTCTCAGGGAGTTTAGATGTCTGGTGAGGTGGGGGTTGGG  873

seq1  CGTTGGGGACTGGAGATATCCTCAATAGAGACAAGGTAGAAAAATATAGG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGGGGACTGGAGATATCCTCAATAGAGACAAGGTAGAAAAATATAGG  923

seq1  ATGAGGAACAGTCAGAGGATGGACTGGAAGGGGAATAAAATCTGGAGTTT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAACAGTCAGAGGATGGACTGGAAGGGGAATAAAATCTGGAGTTT  973

seq1  AAAATTAAATAGATAAATAAATAAAAAATAAATAAATGATTTAAGAAAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATAGATAAATAAATAAAAAATAAATAAATGATTTAAGAAAAA  1023

seq1  AAAAAGAAAGAAAGAAAAATGGGCCTCTTTGTAGTCTACCACAGAATCTG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGAAAGAAAAATGGGCCTCTTTGTAGTCTACCACAGAATCTG  1073

seq1  GTTCCTGCAATTGCACTGGCTGCTTCAGCTGTCATCCAGAGTCAGCAGAA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCAATTGCACTGGCTGCTTCAGCTGTCATCCAGAGTCAGCAGAA  1123

seq1  AGAATTC  1148
      |||||||
seq2  AGAATTC  1130


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