BAC Information

Click to search

BAC

Clone NameB6Ng01-342B02
Chromosome1 (Build37)
Map Location 173,007,722 - 173,120,631
singlet/doubletdoublet
Overlap gene1700009P17Rik, Sdhc, Mpz, Pcp4l1
Upstream geneDdr2, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3
Downstream geneNr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342B02.bB6Ng01-342B02.g
ACCGA125264GA125265
length9971,145
definitionB6Ng01-342B02.b B6Ng01-342B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,007,722 - 173,008,733)(173,119,475 - 173,120,631)
sequence
gaattccactgctccagaccacctgcacaggggtgtcccgtcctcgctgc
aactcccccatcctaacaccattcctaccttcggcgagctgctccacagc
cattcctgactgctctggatcctaccgcagagactttgcctgccttgggg
aagtttttctcaattcagagtccctcttcactagttgagctgtcaacttg
acaaacccccaagtagaacagaaccgaaggtgcatctttgcaggcggcat
gtgccccattcccacacccacacccacaccagccccacccgcccgtttgg
gagcctgctagggtaggctaccccccccgcctccccctacccccaccctc
cgccccacgcgcacaccccggtgtctgtttcgcacagccttctctcctta
cacggctgccccgaggccggccgcacagtcccttctggatgccctttcgg
actggtgccccctggcgcccaggaatcgcctttggtggcagggatggggt
ggagtcgggtcggaataagcactgtgtgtgccgcccgcaggatctgctgg
cacctctccccatgttacccattgaggtggagcacagtcctccgctcagc
actcaggatccggcactgtgctggcagggtcaggacggaggcgaccgggc
agggcacgcatccgctgggcaaaggtttcttttccgactcacatccgcca
cagtggctttacaactccccgaatatcctctgctcgcccaaaccgctccg
ggggcttgcgtgggaaatcgtggctcgcctcgcccacaatggcggtccct
gtgaagtcgaggcgcgggaaccacaccatgagcttgtggcttctgcagcg
gacatctgctccgcattacaattgcccactggaaccccttccgaccctgc
aaccgtccctctctcgtgccacaccacacacacagaccaccacagcacgt
attcatctcgacatctctattcatagtcaaaacgaaaaaaaaacaaa
gaattcagcctgagctacttgagaccccgtgtcaaaacaccaaaacaaaa
ctaaacaggggactggagagagggcactcactgattcttcttccagagat
cctgagttcaattcccagcaaccacatggtggctcacaaccatctgtaat
gggatctgatgccctcttctggtgggtctgaagacagaaacagtgtactc
acatacattaaatacacagataaatctttaaaaataaattaaaaagataa
atctttaaaaacaaaaacctacaacaaaggcaaacaatgactttagacct
gggacattcttctcaccattcagactcacggaagcctgatttgtctcctt
cctttcttcctgcatcgctagcctaggctgacgtagaactcactggctca
gattaacctctgagatgttcatggctcggcctcctgactactctgctgtt
acagggctgagttgttaccaagggcgggcgggcgagcgagctacctcata
ccacagggctgagctttcttcatcaaccctgaagcttgatttctgcttcc
cactgcgggcctccagaaggcatcacctggttccaacccccacccaggga
aaagaggtgccgcttaccattctgttgtgtttggtgccgcctccctccca
cacaaaggcctccagctgagtgtttgctctgtaggctgtagggggattaa
tacgtttattttagaacgttaacaccgctggtgggatgcacattgaagat
tatagtaataaatgaagctttggctttcctctctccccccatcccctact
cctcagtatggggtaaaggctcggctccaagctgtgtgctgagtgccaca
aataaccactcattaaaccgtggcagcccgtgctggggggaatgggcagg
ggctgttgactcattgcataccatgagttggcaggggcacagagttctgc
ccctgactctagtgggggtactgctatccaggaaacagagtgagggagag
ggacaaaccagggggtgggggctagtcagaaaacaggttgggtgccaggg
gagagggacaaccaggaagctggtgcttgttagtctagtctgagtgagaa
ggcaattctagatgtcaagcctctgactatagttctgtattagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_173007722_173008733
seq2: B6Ng01-342B02.b_48_1044

seq1  GAATTCCACTGCTCCAGACCACCTGCACAGGGGTGTCCCGTCCTCGCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAATTCCACTGCTCCAGACCACCTGCACAGGGGTGTCCCGTCCTCGCTGC  50

seq1  AACTCCCCCATCCTAACACCATTCCTACCTTCGGCGAGCTGCTCCACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACTCCCCCATCCTAACACCATTCCTACCTTCGGCGAGCTGCTCCACAGC  100

seq1  CATTCCTGACTGCTCTGGATCCTACCGCAGAGACTTTGCCTGCCTTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGACTGCTCTGGATCCTACCGCAGAGACTTTGCCTGCCTTGGGG  150

seq1  AAGTTTTTCTCAATTCAGAGTCCCTCTTCACAAGTTGAGCTGTCAACTTG  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGTTTTTCTCAATTCAGAGTCCCTCTTCACTAGTTGAGCTGTCAACTTG  200

seq1  ACAAACCCCCAAGTAGAACAGAACCGAAGGTGCATCTTTGCAGGCGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCCCCAAGTAGAACAGAACCGAAGGTGCATCTTTGCAGGCGGCAT  250

seq1  GTGCCCCATTCCCACACCCACACCCACACCAGCCCCACCCGCCCGTTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCCATTCCCACACCCACACCCACACCAGCCCCACCCGCCCGTTTGG  300

seq1  GAGCCTGCTAGGGTAGGCTACCCCCCCCCGCCTCCCCCTACCCCCACCCT  350
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAGCCTGCTAGGGTAGGCTA-CCCCCCCCGCCTCCCCCTACCCCCACCCT  349

seq1  CCGCCCCACGCGCACACCCCGGTGTCTGTTTCGCACAGCCTTCTCTCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCACGCGCACACCCCGGTGTCTGTTTCGCACAGCCTTCTCTCCTT  399

seq1  ACACGGCTGCCCCGAGGCCGGCCGCACAGTCCCTTCTGGATGCCCTTTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGCTGCCCCGAGGCCGGCCGCACAGTCCCTTCTGGATGCCCTTTCG  449

seq1  GACTGGTGCCCCCTGGCGCCCAGGAATCGCCTTTGGTGGCAGGGATGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTGCCCCCTGGCGCCCAGGAATCGCCTTTGGTGGCAGGGATGGGG  499

seq1  TGGAGTCGGGTCGGAATAAGCACTGTGTGTGCCGCCCGCAGGATCTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTCGGGTCGGAATAAGCACTGTGTGTGCCGCCCGCAGGATCTGCTG  549

seq1  GCACCTCTCCCCATGTTACCCATTGAGGTGGAGCACAGTCCTCCGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTCCCCATGTTACCCATTGAGGTGGAGCACAGTCCTCCGCTCAG  599

seq1  CACTCAGGATCCGGCACTGTGCTGGCAGGGTCAGGACGGAGGCGACCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGATCCGGCACTGTGCTGGCAGGGTCAGGACGGAGGCGACCGGG  649

seq1  CAGGGCACGCATCCGCTGGGCAAAGGTTTCTTTCCCGACTCACATCCGCC  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAGGGCACGCATCCGCTGGGCAAAGGTTTCTTTTCCGACTCACATCCGCC  699

seq1  ACAGTGGCTTTACAACTCCCCGAATATCCTCTGCTCGCCCAAACCGCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGCTTTACAACTCCCCGAATATCCTCTGCTCGCCCAAACCGCTCC  749

seq1  GGGGGCTTGCGTGGGAAATCGTGGCTCGCCTCGCCCACAATGGCGGTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTTGCGTGGGAAATCGTGGCTCGCCTCGCCCACAATGGCGGTCCC  799

seq1  TGTGAAGTCGAGGCGCGGGAACCACACCATGAGCTTGTGGC-TCTGCAGC  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTGAAGTCGAGGCGCGGGAACCACACCATGAGCTTGTGGCTTCTGCAGC  849

seq1  GGACATCTGCTCCGCAATAACAATTGCCCACTGGAACCCCTTCCGACCCT  899
      ||||||||||||||| || |||||||||||||||||||||||||||||||
seq2  GGACATCTGCTCCGC-ATTACAATTGCCCACTGGAACCCCTTCCGACCCT  898

seq1  GCAACCGTCCCTCTCTCCGTGCCACCACCACCAACACCACCAAGACCACC  949
      |||||||||||||||| ||||||| ||||||  ||||     ||||||||
seq2  GCAACCGTCCCTCTCT-CGTGCCA-CACCACACACAC-----AGACCACC  941

seq1  ACCAGCACCGTATTCCATTCTCCGACATCTCCTATTCATAGTCCAAAAAA  999
      | ||||| |||||||   ||| |||||||| ||||||||||| |||||  
seq2  A-CAGCA-CGTATTC--ATCT-CGACATCT-CTATTCATAGT-CAAAACG  984

seq1  CAAAAAAAACAAA  1012
       ||||||||||||
seq2  AAAAAAAAACAAA  997

seq1: chr1_173119475_173120631
seq2: B6Ng01-342B02.g_69_1213 (reverse)

seq1  TCCTAATACAGAAACTATAAGACCAGACGCCTGACATCTTAGA--TGCC-  47
      ||||||||||| |||||||    |||| || ||||||| ||||  |||| 
seq2  TCCTAATACAG-AACTATA--GTCAGAGGCTTGACATC-TAGAATTGCCT  46

seq1  TCTCACCTCAAGACTAGACCTTAAACAGCACCAGCTTCCTGGTTTGTCCC  97
      ||||| ||| |||||||||  |||  |||||||||||||||| |||||||
seq2  TCTCA-CTC-AGACTAGAC--TAACAAGCACCAGCTTCCTGG-TTGTCCC  91

seq1  TCTCCCCTTGGCCACCCACCCTGTTTTCTGGACTAGCCCCCACCCCCCTG  147
      ||||||||  | |||||| |||||||||| |||||||||||| |||||||
seq2  TCTCCCCT--GGCACCCAACCTGTTTTCT-GACTAGCCCCCA-CCCCCTG  137

seq1  GTTTGTCCCTCTCCCTCACTCTGTTTCCTGGAATAGCAGTACCCCCCACT  197
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  GTTTGTCCCTCTCCCTCACTCTGTTTCCTGG-ATAGCAGTA-CCCCCACT  185

seq1  AGAGTCAGGGGCAGAACTCTGTGCCCCTGCCAACTCATGGTATGCAATGA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGGGGCAGAACTCTGTGCCCCTGCCAACTCATGGTATGCAATGA  235

seq1  GTCAACAGCCCCTGCCCATTCCCCCCAGCACGGGCTGCCACGGTTTAATG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAGCCCCTGCCCATTCCCCCCAGCACGGGCTGCCACGGTTTAATG  285

seq1  AGTGGTTATTTGTGGCACTCAGCACACAGCTTGGAGCCGAGCCTTTACCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTATTTGTGGCACTCAGCACACAGCTTGGAGCCGAGCCTTTACCC  335

seq1  CATACTGAGGAGTAGGGGATGGGGGGAGAGAGGAAAGCCAAAGCTTCATT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGAGGAGTAGGGGATGGGGGGAGAGAGGAAAGCCAAAGCTTCATT  385

seq1  TATTACTATAATCTTCAATGTGCATCCCACCAGCGGTGTTAACGTTCTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTATAATCTTCAATGTGCATCCCACCAGCGGTGTTAACGTTCTAA  435

seq1  AATAAACGTATTAATCCCCCTACAGCCTACAGAGCAAACACTCAGCTGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACGTATTAATCCCCCTACAGCCTACAGAGCAAACACTCAGCTGGA  485

seq1  GGCCTTTGTGTGGGAGGGAGGCGGCACCAAACACAACAGAATGGTAAGCG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTGTGTGGGAGGGAGGCGGCACCAAACACAACAGAATGGTAAGCG  535

seq1  GCACCTCTTTTCCCTGGGTGGGGGTTGGAACCAGGTGATGCCTTCTGGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTCTTTTCCCTGGGTGGGGGTTGGAACCAGGTGATGCCTTCTGGAG  585

seq1  GCCCGCAGTGGGAAGCAGAAATCAAGCTTCAGGGTTGATGAAGAAAGCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCAGTGGGAAGCAGAAATCAAGCTTCAGGGTTGATGAAGAAAGCTC  635

seq1  AGCCCTGTGGTATGAGGTAGCTCGCTCGCCCGCCCGCCCTTGGTAACAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGTGGTATGAGGTAGCTCGCTCGCCCGCCCGCCCTTGGTAACAAC  685

seq1  TCAGCCCTGTAACAGCAGAGTAGTCAGGAGGCCGAGCCATGAACATCTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTGTAACAGCAGAGTAGTCAGGAGGCCGAGCCATGAACATCTCA  735

seq1  GAGGTTAATCTGAGCCAGTGAGTTCTACGTCAGCCTAGGCTAGCGATGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAATCTGAGCCAGTGAGTTCTACGTCAGCCTAGGCTAGCGATGCA  785

seq1  GGAAGAAAGGAAGGAGACAAATCAGGCTTCCGTGAGTCTGAATGGTGAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGGAAGGAGACAAATCAGGCTTCCGTGAGTCTGAATGGTGAGA  835

seq1  AGAATGTCCCAGGTCTAAAGTCATTGTTTGCCTTTGTTGTAGGTTTTTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTCCCAGGTCTAAAGTCATTGTTTGCCTTTGTTGTAGGTTTTTGT  885

seq1  TTTTAAAGATTTATCTTTTTAATTTATTTTTAAAGATTTATCTGTGTATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGATTTATCTTTTTAATTTATTTTTAAAGATTTATCTGTGTATT  935

seq1  TAATGTATGTGAGTACACTGTTTCTGTCTTCAGACCCACCAGAAGAGGGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATGTGAGTACACTGTTTCTGTCTTCAGACCCACCAGAAGAGGGC  985

seq1  ATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAAT  1035

seq1  TGAACTCAGGATCTCTGGAAGAAGAATCAGTGAGTGCCCTCTCTCCAGTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGGATCTCTGGAAGAAGAATCAGTGAGTGCCCTCTCTCCAGTC  1085

seq1  CCCTGTTTAGTTTTGTTTTGGTGTTTTGACACGGGGTCTCAAGTAGCTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTTAGTTTTGTTTTGGTGTTTTGACACGGGGTCTCAAGTAGCTCA  1135

seq1  GGCTGAATTC  1157
      ||||||||||
seq2  GGCTGAATTC  1145