BAC Information

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BAC

Clone NameB6Ng01-342H09
Chromosome1 (Build37)
Map Location 66,792,925 - 66,919,712
singlet/doubletdoublet
Overlap gene1110028C15Rik, Acadl
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe
Downstream geneMyl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342H09.bB6Ng01-342H09.g
ACCGA125540GA125541
length1,1561,166
definitionB6Ng01-342H09.b B6Ng01-342H09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,918,554 - 66,919,712)(66,792,925 - 66,794,102)
sequence
gaattctgattgtagaatatctttgagtcagctgcaaatgaaccaaaggc
caggaactgttattaagaggacaaaaggatatttgtttgtttgcttgctt
gttttttaaattgtgtgtgaattgttttgagcttgctggcaaacgtatgt
ttggtaaatgcgtacgtaagtgacacagttttgaaactccttttccttgt
gcctttgcttctcatctgagtgtactgggaaaagggacagctttcaccca
ctacaaacttttgcacagttactgctatttgccaaaagttatatgaggcc
caataagtgaaggttcgttcataacagcagtcaccttgagtgaaatactt
gggttgtactgtcctgattgaagaaatcccgtttcttactctgacccgat
gccaactctgtccagggaacccatactggctgcttattggacacatggta
tttttgacagatagcagtaacacatatatatcatatgtattatattgtgt
gtatgtgcaggaagtatagtattatttgtagaaatacaaatttctcagaa
gcttatattgttcttgcttaattaagtgaaattttaagtacaaatacctt
cagattcatgactagtattgtggatcatgaagatacactgttgaatgtcc
caaaagatattatagatacttttaaatggagagaatgagatattgtttat
taactctttgggcatctgccaacaaggttaacatttttccagtacttttt
ttcagcaataaaggcaacacattgtagcacagataacccacattctttcc
atgagtagctgggcagaccatgggagctataatttagagttatcagctcc
ctctgtagagacaagaaattaaaccggctgagttttgctaattcaattgt
tctgaatgttgcaaccttctttgaataccagaaggatagaacaagtaaca
aattctttcatttgatctagataggttctagttcagagaaagagacactg
aaatttcataaatttcactgttttttgtagtttctatatcaaacagtgag
ttctgtgcttagacttaggtcctactctcatctcaatgaatacattactc
ctcaggttgagaacaggttctgctccagattctgagtagccgataggctc
agcttg

gaattcctttaccacgattacttattatctaaagaagatattctttatgg
ggtaaagtagatatgactcccaggtgaggaagagctggtttctcagtagt
agactgctattacttaaatactagttgtcacctccttttcttcatttaat
tggacacctcagacactccaattcccctgtttcctatatcattgtaactc
attatgtctcctacagactatttattctctcttccctcaaggtacaggag
agtagctgagatacttctgttgaaatgtaatttgtctatgtgcctgattt
ttccaacatgaatttaaatctatataaaatcaaattaactttgaaatttt
tctaatttttgtttgtttgtttgtttgttttttgtttttccagacagggt
ttctctgtgtagccctggctgtcctggaactcactttgtagactaggctg
acctcgaactcagaaatccacctgcctctgcctcccaagtgctgggatta
aaggcgtgcgccaccacacccggcctgaaatttttctaattttttaacca
aaggatgaacatacctataattatttagatgttatccaaaaatattttac
ttaagtatttttaattaaaaatgaagtgcccattaatcatataaacaaag
tctgtaaatccaattatcttatattttagagagaaaatgaaaacattaaa
ataggaatttgagtctatttttcttctaaactcctgtttgtgcttctgaa
tgatgttgctaacccacccagctacacccagctaagccctgatgctgcta
acccacccggctacaaccagctaagccctgaagtatcagtgatgagcctt
agaaacactacttttaccaacttgccttaaggtttattaaggaattttag
tgattgcaatcttaattttaagatttaattccatttttaaattttatgtc
tactagaactgtttttgttttttatgactggcctgtagattacatgtaaa
actgatgagtaatgaaaattaatcctcaatcgtcttagtcttccatagtt
cctatggcctttttactatttaggtaagtagctctgagtgcaacctaaat
tctcgaacacactgtaggtgaataacaagctttaaagatatatttacata
gaaccatgtaagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66918554_66919712
seq2: B6Ng01-342H09.b_46_1201 (reverse)

seq1  CAAGCTGAG-CTATCGCTTACTCAGAATTCTTGGGAGCAGAA-CTG-TCT  47
      ||||||||| ||||||  ||||||||| |||  ||||||||| ||| |||
seq2  CAAGCTGAGCCTATCGGCTACTCAGAA-TCT--GGAGCAGAACCTGTTCT  47

seq1  CAACTTGA-GAGTATTGTTTATACATTTTGAGATGAGAGTAGGACCTAAG  96
      |||| ||| ||||| ||  ||| ||  |||||||||||||||||||||||
seq2  CAACCTGAGGAGTAATG--TATTCA--TTGAGATGAGAGTAGGACCTAAG  93

seq1  TCTAAGCACAGAACTCACTTGTTTTATATAG-AACTAC-AAAAACAGTGA  144
      |||||||||||||||||| ||||| |||||| |||||| |||||||||||
seq2  TCTAAGCACAGAACTCAC-TGTTTGATATAGAAACTACAAAAAACAGTGA  142

seq1  ATTTTATGAAATTTTCAGTGTCTCTTTCTTCTG-ACTAGAACCTATCTAG  193
      | ||||||||| |||||||||||||||| |||| ||||||||||||||||
seq2  AATTTATGAAA-TTTCAGTGTCTCTTTC-TCTGAACTAGAACCTATCTAG  190

seq1  ATCAAATG-AAGAATTTGTTACTTGTTCTATCCTTCTGGTATTCAAAGAA  242
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGAAAGAATTTGTTACTTGTTCTATCCTTCTGGTATTCAAAGAA  240

seq1  GGTTGCAACATTCAGAACATTTGAATTAGCAAAACTCAGCCGGTTTTAAT  292
      ||||||||||||||||||| ||||||||||||||||||||||||||  | 
seq2  GGTTGCAACATTCAGAACAATTGAATTAGCAAAACTCAGCCGGTTT--AA  288

seq1  TTTCTTGTCTCTACAGAGGGAGCTGATAACTCTAAATTATAGCT-CCATG  341
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCTTGTCTCTACAGAGGGAGCTGATAACTCTAAATTATAGCTCCCATG  338

seq1  GTCTGCCCAGCTACTCATGGAAAGAATGTGGGTTATCTGTGCTACAATGT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCAGCTACTCATGGAAAGAATGTGGGTTATCTGTGCTACAATGT  388

seq1  GTTGCCTTTATTGCTGAAAAAAAGTACTGGAAAAATGTTAACCTTGTTGG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCTTTATTGCTGAAAAAAAGTACTGGAAAAATGTTAACCTTGTTGG  438

seq1  CAGATGCCCAAAGAGTTAATAAACAATATCTCATTCTCTCCATTTAAAAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCCAAAGAGTTAATAAACAATATCTCATTCTCTCCATTTAAAAG  488

seq1  TATCTATAATATCTTTTGGGACATTCAACAGTGTATCTTCATGATCCACA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATAATATCTTTTGGGACATTCAACAGTGTATCTTCATGATCCACA  538

seq1  ATACTAGTCATGAATCTGAAGGTATTTGTACTTAAAATTTCACTTAATTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGTCATGAATCTGAAGGTATTTGTACTTAAAATTTCACTTAATTA  588

seq1  AGCAAGAACAATATAAGCTTCTGAGAAATTTGTATTTCTACAAATAATAC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAACAATATAAGCTTCTGAGAAATTTGTATTTCTACAAATAATAC  638

seq1  TATACTTCCTGCACATACACACAATATAATACATATGATATATATGTGTT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTTCCTGCACATACACACAATATAATACATATGATATATATGTGTT  688

seq1  ACTGCTATCTGTCAAAAATACCATGTGTCCAATAAGCAGCCAGTATGGGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATCTGTCAAAAATACCATGTGTCCAATAAGCAGCCAGTATGGGT  738

seq1  TCCCTGGACAGAGTTGGCATCGGGTCAGAGTAAGAAACGGGATTTCTTCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGACAGAGTTGGCATCGGGTCAGAGTAAGAAACGGGATTTCTTCA  788

seq1  ATCAGGACAGTACAACCCAAGTATTTCACTCAAGGTGACTGCTGTTATGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGACAGTACAACCCAAGTATTTCACTCAAGGTGACTGCTGTTATGA  838

seq1  ACGAACCTTCACTTATTGGGCCTCATATAACTTTTGGCAAATAGCAGTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAACCTTCACTTATTGGGCCTCATATAACTTTTGGCAAATAGCAGTAA  888

seq1  CTGTGCAAAAGTTTGTAGTGGGTGAAAGCTGTCCCTTTTCCCAGTACACT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAAAAGTTTGTAGTGGGTGAAAGCTGTCCCTTTTCCCAGTACACT  938

seq1  CAGATGAGAAGCAAAGGCACAAGGAAAAGGAGTTTCAAAACTGTGTCACT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGAGAAGCAAAGGCACAAGGAAAAGGAGTTTCAAAACTGTGTCACT  988

seq1  TACGTACGCATTTACCAAACATACGTTTGCCAGCAAGCTCAAAACAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTACGCATTTACCAAACATACGTTTGCCAGCAAGCTCAAAACAATTC  1038

seq1  ACACACAATTTAAAAAACAAGCAAGCAAACAAACAAATATCCTTTTGTCC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAATTTAAAAAACAAGCAAGCAAACAAACAAATATCCTTTTGTCC  1088

seq1  TCTTAATAACAGTTCCTGGCCTTTGGTTCATTTGCAGCTGACTCAAAGAT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAACAGTTCCTGGCCTTTGGTTCATTTGCAGCTGACTCAAAGAT  1138

seq1  ATTCTACAATCAGAATTC  1159
      ||||||||||||||||||
seq2  ATTCTACAATCAGAATTC  1156


seq1: chr1_66792925_66794102
seq2: B6Ng01-342H09.g_70_1235

seq1  GAATTCCTTTACCACGATTACTTATTATCTAAAGAAGATATTCTTTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTACCACGATTACTTATTATCTAAAGAAGATATTCTTTATGG  50

seq1  GGTAAAGTAGATATGACTCCCAGGTGAGGAAGAGCTGGTTTCTCAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGTAGATATGACTCCCAGGTGAGGAAGAGCTGGTTTCTCAGTAGT  100

seq1  AGACTGCTATTACTTAAATACTAGTTGTCACCTCCTTTTCTTCATTTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTATTACTTAAATACTAGTTGTCACCTCCTTTTCTTCATTTAAT  150

seq1  TGGACACCTCAGACACTCCAATTCCCCTGTTTCCTATATCATTGTAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACCTCAGACACTCCAATTCCCCTGTTTCCTATATCATTGTAACTC  200

seq1  ATTATGTCTCCTACAGACTATTTATTCTCTCTTCCCTCAAGGTACAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTCTCCTACAGACTATTTATTCTCTCTTCCCTCAAGGTACAGGAG  250

seq1  AGTAGCTGAGATACTTCTGTTGAAATGTAATTTGTCTATGTGCCTGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGAGATACTTCTGTTGAAATGTAATTTGTCTATGTGCCTGATTT  300

seq1  TTCCAACATGAATTTAAATCTATATAAAATCAAATTAACTTTGAAATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACATGAATTTAAATCTATATAAAATCAAATTAACTTTGAAATTTT  350

seq1  TCTAATTTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTTTCCAGACAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTTTGTTTGTTTGTTTGTTTGTTTTTTGTTTTTCCAGACAGGGT  400

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTAGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTAGGCTG  450

seq1  ACCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTA  500

seq1  AAGGCGTGCGCCACCACACCCGGCCTGAAATTTTTCTAATTTTTTAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGTGCGCCACCACACCCGGCCTGAAATTTTTCTAATTTTTTAACCA  550

seq1  AAGGATGAACATACCTATAATTATTTAGATGTTATCCAAAAATATTTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAACATACCTATAATTATTTAGATGTTATCCAAAAATATTTTAC  600

seq1  TTAAGTATTTTTAATTAAAAATGAAGTGCCCATTAATCATATAAACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATTTTTAATTAAAAATGAAGTGCCCATTAATCATATAAACAAAG  650

seq1  TCTGTAAATCCAATTATCTTATATTTTAGAGAGAAAATGAAAACATTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAATCCAATTATCTTATATTTTAGAGAGAAAATGAAAACATTAAA  700

seq1  ATAGGAATTTGAGTCTA-TTTTCTTCTAAACTCCTGTTTGTGCTTCTGAA  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAGGAATTTGAGTCTATTTTTCTTCTAAACTCCTGTTTGTGCTTCTGAA  750

seq1  TGATGTTGCTAACCCACCCAGCTACACCCAGCTAAGCCCTGATGCTGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGCTAACCCACCCAGCTACACCCAGCTAAGCCCTGATGCTGCTA  800

seq1  ACCCACCCGGCTACAACCAGCTAAGCCCTGAAGTATCAGTGATGAGCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCGGCTACAACCAGCTAAGCCCTGAAGTATCAGTGATGAGCCTT  850

seq1  AGAAACACTAC-TTTACCAACTTGCCTTAAAGGTTTATTAAGGAATTTTA  898
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  AGAAACACTACTTTTACCAACTTGCCTT-AAGGTTTATTAAGGAATTTTA  899

seq1  GTGAATGCAATCTTAATTTTAAGATTTATTCCAATTTTTAAATTTTATGT  948
      |||| ||||||||||||||||||||||| | | |||||||||||||||||
seq2  GTGATTGCAATCTTAATTTTAAGATTTAATTCCATTTTTAAATTTTATGT  949

seq1  CTACTAGAACTGTTTTTG-TTTTTATGACTTGGCTTGTAGATTACATGTT  997
      |||||||||||||||||| |||||||||| |||| ||||||||||||| |
seq2  CTACTAGAACTGTTTTTGTTTTTTATGAC-TGGCCTGTAGATTACATG-T  997

seq1  AAAACTGATGAGTAATGGAAAAATTATTCTCAAATCGTTTCTTAGTCTTC  1047
      |||||||||||||||||  ||||||| ||   |||||  |||||||||||
seq2  AAAACTGATGAGTAATG--AAAATTAATCCTCAATCG--TCTTAGTCTTC  1043

seq1  CATAGTTTTCTTATGG-CTTTTTACTATTTAGGTAAGTAGCTCCTTGAAG  1096
      |||||  ||| ||||| ||||||||||||||||||||||||||  || ||
seq2  CATAG--TTCCTATGGCCTTTTTACTATTTAGGTAAGTAGCTC--TG-AG  1088

seq1  TGCAAACATAATTCTTCAGAACAACACTGTAAGTGATAAACAAGCTTAAA  1146
      ||||| |  ||||||   |||| |||||||| ||||  ||||||||| ||
seq2  TGCAACCTAAATTCT--CGAAC-ACACTGTAGGTGAATAACAAGCTTTAA  1135

seq1  GGTTATATTTACATAGAAACAAGGGAAGACAA  1178
       | ||||||||||||| ||| | | |||||||
seq2  AGATATATTTACATAG-AACCATGTAAGACAA  1166


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