BAC Information

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BAC

Clone NameB6Ng01-342N04
Chromosome1 (Build37)
Map Location 52,886,424 - 52,887,636
singlet/doubletsinglet
Overlap genenone
Upstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1
Downstream geneHibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866, LOC100042162, Dnahc7, Stk17b, Hecw2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342N04.bB6Ng01-342N04.g
ACCGA125783GA125784
length1,2221,212
definitionB6Ng01-342N04.b B6Ng01-342N04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcctagtttctccatacctattcaacatag
tacttgaagtcctagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcagtgaagtagctagatataaaattaactcaaacaag
tcaatggcttttctctacacaaaggacaaacaggctgagaaagaaattag
agaaacaacacccttctcaatagtcacaaataatataaaataccttgtca
tgactctaactaaggaagtgaaagatctgtatgataagaacttcaagtct
ctgaagaaagaaattaaagaagacctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaatatagtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaagggcaatctgcaaattcatctggaataacaaaaaacc
tagaatagcaaaaactcttctcaatgataaaagaacctctgggggaatca
ccatgcctgacctaaaactgtactacagagcaattgtgataaaaactgca
tgggactggtatagtgacagacaagtagaccaatggaatagaattgaagc
cctagaaatgaacccacacacctatggtcacttgatctttgacaagggag
ctaaaaccatccagtggaaaaaagacagcattttcaacaatggtgctggc
acaactggcaattatcatgtagaagaatgagaattgatccattcctatct
cttgtactaaggtcaaatctaagtggatcaaggactccacataaccagag
tcaatgggatggaacctggaggcatcatcctggagtgaggtaacacattc
acaacgacctcaaccatatgtacttcactgatagtgaataagcaacctaa
gataccagatagatcaatgcctaaacatggaactcagaaaatgagactgt
agagtgtgtgtgacacacttac
gaattcctcttcatgcaaaggcggcatttccagcacctttataatgtaca
ctgaccctgaaaatccctacccactttccaaggtttgtattgctcttgtt
gcctccaataaaggagagctgtttcactgaaaaccaacttggagaaggtt
atttcatctgccactcacacagcagagatcctgtggaacctatcagccaa
aataagctttgttccttccattttggcccagtgcacaacagtgcctggat
acccgaagaccagaagcagaacttgccagcagaaggaagactcaatgaca
atattcctgtgacagaggaggacctctgtgctggacagcagggaagatgg
caccttgtcagaagctgatgcaggaacgtgtaagggggcattcagatggc
acacaggcaaaggcacctcaacaacgtttcctgctatcaattcaaactca
gtccatgctctgagtaaaatgcaattagtcatcaccaagccacctattgt
gggtggagttactttcacatctgcctaacagaagacatacaggtctcaaa
tgctgaagcattcacctggtgaaccatagccaaagtcacttcaagctttc
taagtgttgagcttgaattactaggtacagacagtgacaaggacacagta
cttggggtaattggtcagtttgcaactagtttgaagtgacataatttttt
tcaaattatgcacatatattggggtggaagttgatgagtgccaatatttg
agaggtcaggggcttcagatagaccacttggaactggagttccagcagtt
gtgagccaccatatgagtctggtgagccaaactcaagggctttgcaaagg
cagcattagcttctaagtgcagtgccaagcatgagaccattagatacaat
tctatataaagaatatgactgcgtcgagaaaggcctagagctgtactgga
actgcggcttattgaccttagacacattggctaatatgccattgaaattc
ttttcaagaagaagttatttggtggcttggagaaaatgcttcttttaatg
atgataaagggccacttttcaaacaattatatagttgatcttttttaatt
cctaatattgcaccaggaagacttaaaaccgaagactaaaaatatcccga
agcaacggttagtttatcggtaggtgtgcttccttttaatatttgcccca
catttttcatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_52886424_52887636
seq2: B6Ng01-342N04.g_69_1280 (reverse)

seq1  CTTTGAAAAATGTGGGGAAAATATTAAAAAGAAAACAACCTACCATATAA  50
      || |||||||||||||| ||||||||||| |||    |||||||  ||||
seq2  CTATGAAAAATGTGGGGCAAATATTAAAAGGAAGCACACCTACC-GATAA  49

seq1  ACTATAACTGTTGGTGTTTTGGGTA-TTTTAGTCTTTGGGTTTTTTAGTC  99
      ||  |||| ||||   ||  || || |||||||||| ||  |||| ||||
seq2  AC--TAACCGTTG--CTTCGGGATATTTTTAGTCTTCGG--TTTTAAGTC  93

seq1  TTCTGTGTGC-ATATATGGATTTAAAAAAAAGATC-ACTATATATTGTTT  147
      |||   |||| ||||  ||| ||  |||||||||| |||||||| |  ||
seq2  TTCCTGGTGCAATATTAGGAATT--AAAAAAGATCAACTATATAATTGTT  141

seq1  TGAAAAGTGCCCTTTAATCATCA-TAAAAG-AGCATTTTCTCCAAGCCAC  195
      ||||||||| || || ||||||| |||||| |||||||||||||||||||
seq2  TGAAAAGTGGCCCTTTATCATCATTAAAAGAAGCATTTTCTCCAAGCCAC  191

seq1  CAAATA--CTCTTC-TGAAAGAATTTTCAATGGCATATTAGCCAATGTGT  242
      ||||||   ||||| |||||  | ||||||||||||||||||||||||||
seq2  CAAATAACTTCTTCTTGAAAAGAATTTCAATGGCATATTAGCCAATGTGT  241

seq1  CCTAAGGTCAAT-AGCCGCAGTTCCAGTACAGCTCTAGGCCTTTCTCGAC  291
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -CTAAGGTCAATAAGCCGCAGTTCCAGTACAGCTCTAGGCCTTTCTCGAC  290

seq1  GCAGTCATATTCTTTATATAGAATTGTATCTAATGGTCTCATGCTTGGCA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCATATTCTTTATATAGAATTGTATCTAATGGTCTCATGCTTGGCA  340

seq1  CTGCACTTAGAAGCTAATGCTGCCCTTGCAAAGCCCTTGAGTTTGGCTCA  391
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTGCACTTAGAAGCTAATGCTGCCTTTGCAAAGCCCTTGAGTTTGGCTCA  390

seq1  CCAGACTCATATGGTGGCTCACAACTGCTGGAACTCCAGTTCCAAGTGGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCATATGGTGGCTCACAACTGCTGGAACTCCAGTTCCAAGTGGT  440

seq1  CTATCTGAAGCCCCTGACCTCTCAAATATTGGCACTCATCAACTTCCACC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGAAGCCCCTGACCTCTCAAATATTGGCACTCATCAACTTCCACC  490

seq1  CCAATATATGTGCATAATTTGAAAAAAATTATGTCACTTCAAACTAGTTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATATGTGCATAATTTGAAAAAAATTATGTCACTTCAAACTAGTTG  540

seq1  CAAACTGACCAATTACCCCAAGTACTGTGTCCTTGTCACTGTCTGTACCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGACCAATTACCCCAAGTACTGTGTCCTTGTCACTGTCTGTACCT  590

seq1  AGTAATTCAAGCTCAACACTTAGAAAGCTTGAAGTGACTTTGGCTATGGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCAAGCTCAACACTTAGAAAGCTTGAAGTGACTTTGGCTATGGT  640

seq1  TCACCAGGTGAATGCTTCAGCATTTGAGACCTGTATGTCTTCTGTTAGGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGTGAATGCTTCAGCATTTGAGACCTGTATGTCTTCTGTTAGGC  690

seq1  AGATGTGAAAGTAACTCCACCCACAATAGGTGGCTTGGTGATGACTAATT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAAAGTAACTCCACCCACAATAGGTGGCTTGGTGATGACTAATT  740

seq1  GCATTTTACTCAGAGCATGGACTGAGTTTGAATTGATAGCAGGAAACGTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTACTCAGAGCATGGACTGAGTTTGAATTGATAGCAGGAAACGTT  790

seq1  GTTGAGGTGCCTTTGCCTGTGTGCCATCTGAATGCCCCCTTACACGTTCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGGTGCCTTTGCCTGTGTGCCATCTGAATGCCCCCTTACACGTTCC  840

seq1  TGCATCAGCTTCTGACAAGGTGCCATCTTCCCTGCTGTCCAGCACAGAGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAGCTTCTGACAAGGTGCCATCTTCCCTGCTGTCCAGCACAGAGG  890

seq1  TCCTCCTCTGTCACAGGAATATTGTCATTGAGTCTTCCTTCTGCTGGCAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCTGTCACAGGAATATTGTCATTGAGTCTTCCTTCTGCTGGCAA  940

seq1  GTTCTGCTTCTGGTCTTCGGGTATCCAGGCACTGTTGTGCACTGGGCCAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCTTCTGGTCTTCGGGTATCCAGGCACTGTTGTGCACTGGGCCAA  990

seq1  AATGGAAGGAACAAAGCTTATTTTGGCTGATAGGTTCCACAGGATCTCTG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGGAACAAAGCTTATTTTGGCTGATAGGTTCCACAGGATCTCTG  1040

seq1  CTGTGTGAGTGGCAGATGAAATAACCTTCTCCAAGTTGGTTTTCAGTGAA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGAGTGGCAGATGAAATAACCTTCTCCAAGTTGGTTTTCAGTGAA  1090

seq1  ACAGCTCTCCTTTATTGGAGGCAACAAGAGCAATACAAACCTTGGAAAGT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTCCTTTATTGGAGGCAACAAGAGCAATACAAACCTTGGAAAGT  1140

seq1  GGGTAGGGATTTTCAGGGTCAGTGTACATTATAAAGGTGCTGGAAATGCC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGGATTTTCAGGGTCAGTGTACATTATAAAGGTGCTGGAAATGCC  1190

seq1  GCCTTTGCATGAAGAGGAATTC  1213
      ||||||||||||||||||||||
seq2  GCCTTTGCATGAAGAGGAATTC  1212