BAC Information

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BAC

Clone NameB6Ng01-342O08
Chromosome1 (Build37)
Map Location 178,743,009 - 178,880,641
singlet/doubletdoublet
Overlap geneSdccag8, LOC666235
Upstream geneWdr64, Exo1, Gm104, Pld5, B020018G12Rik, Cep170
Downstream geneAkt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss, EG631584
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342O08.bB6Ng01-342O08.g
ACCGA125833GA125834
length8541,036
definitionB6Ng01-342O08.b B6Ng01-342O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,743,009 - 178,743,861)(178,879,604 - 178,880,641)
sequence
gaattctcattaacagaataaaaaccaatcaatttcataaactaaaacat
aggtggcctatgtttttgttgttgttgtttgctttaagcagatcctaatg
tattcccttaggaacatgaacgcattacccacccagtggaaaaaataatt
ctgctggttcatttccctgctaaacaacagcttcgctgtcaggccctacc
taaacccagccctcattgtcacctagtaattttaaattgatcagcttggc
agacttgggactctagcctgtacagcctgtctttatactctttggggatg
ggggtcaggacgacagtttatactcaaaatcagaaaacagagatcatatg
acttaggacacaattccttgtcttcccgtacatgtcacgcagctgctctc
tctctctctctcccttgaataaaaatggaagtgaactagacccaaaccca
acaactgaatcttgggacaatgaagcccacaggaagccactcgctcctcc
cgtgggtttactaccgagctggaggctacgtggtgtgctgtcgcccggca
gcctgcgtgacagcacgtcttccacgccctcccaacgccatctgaaggct
agtcgtccgtcaccccctcctcaccgccgccaccctcctcacaccccgaa
accaaccctacaaaagggatgggcgccctggaaaactcccttgcccagcg
gcagcgcagccattccttagacgctccgcccgcagcgttcccaggcagct
cagcggcggctacacaaagcgggagtgaacagaagaggaccgggcgcact
gaaagggaagccggccctgtgcagccggccgcagcccatggggggagggg
aggg

gaattctgtatgttactatttgaatccctcagactcagaaccaggtgtta
cagcctgacccactaagttgtgagcgccaccttttttgggttctgtttag
ccctacatattttcatcacagacttttgcccattagaaaatgttactcat
atcttgcccagttagtgaagtttgcatgagctgatagatcagcccctgtt
ccttaatgtggggtgagcaagcactgtgccgggggctcacagctgtcttc
cccagctgtgggttcctctgcagcccagccaaccacagatggaatgctgg
gtctatactgagcacgagtattttcctgtggttagcttccacccagtaca
gtttaataactcatctcatagatttacatcgtattagcaactataggtaa
cctagagagaatttcgactatgtgggagagggtttagggtgttgctcggt
gctgggctactagactagcaagtattaggtcctgggcctcatttttaaca
ccataaaaataagaaataaaattaaaaaatgaaatacgtaggaaaatatg
aacaggttctatataactactacattgttttatgttacaaatgtgagcat
ttgtcatttgtggctttgggtgtggtgtaaatcctgcaaccaacaccctg
aggttgtcaaagggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacg
agcgcatacttgttgtttctcattcctgtcattaaatgtacttctaaatc
ctataaccatttctgcaacatgactttagaggcactttttacaaagctga
ggtttaaaggagaccgggcaacatggtcaaggttacatgtacataaatga
actgacaaccaagattctaatctggtttccttctgaatcccaaagagttc
tttctgaccagtgcttgtcaccacaaaggaacagctggcacagaagtcag
accagcatgtggaggatagcagcacactgttttcccacctcatttactct
cactcaatataattgcattgggtgccatctatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_178743009_178743861
seq2: B6Ng01-342O08.b_46_899

seq1  GAATTCTCATTAACAGAATAAAAACCAATCAATTTCATAAACTAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTAACAGAATAAAAACCAATCAATTTCATAAACTAAAACAT  50

seq1  AGGTGGCCTATGTTTTTGTTGTTGTTGTTTGCTTTAAGCAGATCCTAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCTATGTTTTTGTTGTTGTTGTTTGCTTTAAGCAGATCCTAATG  100

seq1  TATTCCCTTAGGAACATGAACGCATTACCCACCCAGTGGAAAAAATAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTTAGGAACATGAACGCATTACCCACCCAGTGGAAAAAATAATT  150

seq1  CTGCTGGTTCATTTCCCTGCTAAACAACAGCTTCGCTGTCAGGCCCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTTCATTTCCCTGCTAAACAACAGCTTCGCTGTCAGGCCCTACC  200

seq1  TAAACCCAGCCCTCATTGTCACCTAGTAATTTTAAATTGATCAGCTTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCAGCCCTCATTGTCACCTAGTAATTTTAAATTGATCAGCTTGGC  250

seq1  AGACTTGGGACTCTAGCCTGTACAGCCTGTCTTTATACTCTTTGGGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGGACTCTAGCCTGTACAGCCTGTCTTTATACTCTTTGGGGATG  300

seq1  GGGGTCAGGACGACAGTTTATACTCAAAATCAGAAAACAGAGATCATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGGACGACAGTTTATACTCAAAATCAGAAAACAGAGATCATATG  350

seq1  ACTTAGGACACAATTCCTTGTCTTCCCGTACATGTCACGCAGCTGCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGACACAATTCCTTGTCTTCCCGTACATGTCACGCAGCTGCTCTC  400

seq1  TCTCTCTCTCTCCCTTGAATAAAAATGGAAGTGAACTAGACCCAAACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCCCTTGAATAAAAATGGAAGTGAACTAGACCCAAACCCA  450

seq1  ACAACTGAATCTTGGGACAATGAAGCCCACAGGAAGCCACTCGCTCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGAATCTTGGGACAATGAAGCCCACAGGAAGCCACTCGCTCCTCC  500

seq1  CGTGGGTTTACTACCGAGCTGGAGGCTACGTGGTGTGCTGTCGCCCGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGTTTACTACCGAGCTGGAGGCTACGTGGTGTGCTGTCGCCCGGCA  550

seq1  GCCTGCGTGACAGCACGTCTTCCACGCCCTCCCAACGCCATCTGAAGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGTGACAGCACGTCTTCCACGCCCTCCCAACGCCATCTGAAGGCT  600

seq1  AGTCGTCCGTCACCCCCTCCTCACCGCCGCCACCCTCCTCACACCCCGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTCCGTCACCCCCTCCTCACCGCCGCCACCCTCCTCACACCCCGAA  650

seq1  ACCAACCCTACAAAAGGGATGGGCGCCCTGGAAAACTCCCTTGCCCAGCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCCTACAAAAGGGATGGGCGCCCTGGAAAACTCCCTTGCCCAGCG  700

seq1  GCAGCGCAGCCATTCCTTAGACGCTCCGCCCGCAGCGTTCCCAGGCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGCAGCCATTCCTTAGACGCTCCGCCCGCAGCGTTCCCAGGCAGCT  750

seq1  CAGGCGGCGGCTACACAAAGCGGGAGTGAACAGAAGAGGACCGGGCGCAC  800
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-GCGGCGGCTACACAAAGCGGGAGTGAACAGAAGAGGACCGGGCGCAC  799

seq1  TG-AAGGGAAGCCGGCCCTGTGCAGCCGGCCGCAGCCCAT-GGGGGAGGG  848
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAAAGGGAAGCCGGCCCTGTGCAGCCGGCCGCAGCCCATGGGGGGAGGG  849

seq1  GAGGG  853
      |||||
seq2  GAGGG  854


seq1: chr1_178879604_178880641
seq2: B6Ng01-342O08.g_68_1103 (reverse)

seq1  ACACATAGATGGCACCCAATGCATATTTATTGAATGAGTGATAAATGA-G  49
      |||||||||||||||||||||||  | |||||| |||| | ||||||| |
seq2  ACACATAGATGGCACCCAATGCAATTATATTGAGTGAGAG-TAAATGAGG  49

seq1  TGGGAAAACAGGTGTGCTGCTATCCTCCACATGCTGGTCTGACTCCTGGT  99
      |||||||||| ||||||||||||||||||||||||||||||||| || ||
seq2  TGGGAAAACA-GTGTGCTGCTATCCTCCACATGCTGGTCTGACTTCT-GT  97

seq1  GCCAGCCTGTTCCTTTGTGGGTGACAAGCACTGTTCAGGAAAGAACTCTT  149
      ||||| |||||||||||| |||||||||||||| ||| ||||||||||||
seq2  GCCAG-CTGTTCCTTTGT-GGTGACAAGCACTGGTCA-GAAAGAACTCTT  144

seq1  TGGGATTCAGAAGG-AACCAGATTAGAATCTTGGTTTGTCAGTCATTTTA  198
      |||||||||||||| ||||||||||||||||||| ||||||||   ||||
seq2  TGGGATTCAGAAGGAAACCAGATTAGAATCTTGG-TTGTCAGTTCATTTA  193

seq1  TTGTACATGTAACCTTGACCATGTTGCCCGGTCTCC-TTAAACCTCAGCT  247
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  -TGTACATGTAACCTTGACCATGTTGCCCGGTCTCCTTTAAACCTCAGCT  242

seq1  TTGT-AAAAGTGCCTCTAAAGTCATGTTGCAG-AATGGTTATAGGATTTA  295
      |||| ||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTGTAAAAAGTGCCTCTAAAGTCATGTTGCAGAAATGGTTATAGGATTTA  292

seq1  GAAGTACATTTAATGACAGGAATGAGAAAC-ACAAGTATGCGCTCGTATA  344
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAGTACATTTAATGACAGGAATGAGAAACAACAAGTATGCGCTCGTATA  342

seq1  CACACACACACACACACACACACACACACACCCTTTGACAACCTCAGGGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACCCTTTGACAACCTCAGGGT  392

seq1  GTTGGTTGCAGGATTTACACCACACCCAAAGCCACAAATGACAAATGCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGCAGGATTTACACCACACCCAAAGCCACAAATGACAAATGCTC  442

seq1  ACATTTGTAACATAAAACAATGTAGTAGTTATATAGAACCTGTTCATATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGTAACATAAAACAATGTAGTAGTTATATAGAACCTGTTCATATT  492

seq1  TTCCTACGTATTTCATTTTTTAATTTTATTTCTTATTTTTATGGTGTTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACGTATTTCATTTTTTAATTTTATTTCTTATTTTTATGGTGTTAA  542

seq1  AAATGAGGCCCAGGACCTAATACTTGCTAGTCTAGTAGCCCAGCACCGAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGGCCCAGGACCTAATACTTGCTAGTCTAGTAGCCCAGCACCGAG  592

seq1  CAACACCCTAAACCCTCTCCCACATAGTCGAAATTCTCTCTAGGTTACCT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCCTAAACCCTCTCCCACATAGTCGAAATTCTCTCTAGGTTACCT  642

seq1  ATAGTTGCTAATACGATGTAAATCTATGAGATGAGTTATTAAACTGTACT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGCTAATACGATGTAAATCTATGAGATGAGTTATTAAACTGTACT  692

seq1  GGGTGGAAGCTAACCACAGGAAAATACTCGTGCTCAGTATAGACCCAGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAAGCTAACCACAGGAAAATACTCGTGCTCAGTATAGACCCAGCA  742

seq1  TTCCATCTGTGGTTGGCTGGGCTGCAGAGGAACCCACAGCTGGGGAAGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTGTGGTTGGCTGGGCTGCAGAGGAACCCACAGCTGGGGAAGAC  792

seq1  AGCTGTGAGCCCCCGGCACAGTGCTTGCTCACCCCACATTAAGGAACAGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAGCCCCCGGCACAGTGCTTGCTCACCCCACATTAAGGAACAGG  842

seq1  GGCTGATCTATCAGCTCATGCAAACTTCACTAACTGGGCAAGATATGAGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATCTATCAGCTCATGCAAACTTCACTAACTGGGCAAGATATGAGT  892

seq1  AACATTTTCTAATGGGCAAAAGTCTGTGATGAAAATATGTAGGGCTAAAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTCTAATGGGCAAAAGTCTGTGATGAAAATATGTAGGGCTAAAC  942

seq1  AGAACCCAAAAAAGGTGGCGCTCACAACTTAGTGGGTCAGGCTGTAACAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAAAAAAGGTGGCGCTCACAACTTAGTGGGTCAGGCTGTAACAC  992

seq1  CTGGTTCTGAGTCTGAGGGATTCAAATAGTAACATACAGAATTC  1038
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCTGAGTCTGAGGGATTCAAATAGTAACATACAGAATTC  1036


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