BAC Information

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BAC

Clone NameB6Ng01-342O19
Chromosome1 (Build37)
Map Location 117,690,647 - 117,691,787
singlet/doubletsinglet
Overlap geneCntnap5a
Upstream geneLOC227506
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342O19.bB6Ng01-342O19.g
ACCGA125853GA125854
length1,1471,178
definitionB6Ng01-342O19.b B6Ng01-342O19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcagctactactccagcatcatggctacttgcctgctaccttgc
tgagcaccacgatggtcatggactgtatcactctggaactgtgagcctca
aattcaaaggcttgttttataagttgcctagatcatgatgttttttttca
catcaattgagaagtaacttaaaaaactacctacatctttctgggaagaa
ttttctatattagagatatggaagcttattactgttagaaaaccccccac
acacacatatgcaggaacactcactaatgaccttttcttctatctaaatt
taaaaaccttggtgagactcctctgcaagttttaactgctacatcagcta
gagactgaccctttaaataaagattcaacactgcaaaatcatgactaaaa
aagcccaccacttcctgaccagctggtctgctggcacaagggaagacatc
ttgccttgcttgcttccacatttgattttttttttctgatatatttcaga
ggcattctctttttttcaatatgtttgtttcctcaaagtcagtgcagctg
aggaaattgagctgcaggagagaagcagcgtgtgattggtacgcctgcac
agtcaacacaatcattccctatgtctggcttccaggacttttatcatcat
tgaggagaattacagagctaaatgcatatgtctttgtggtcaaacgctga
attagatttaaagacagtctatagatgggaaaatggtgaggtattttgac
tcatgagctgtaccataggaaatgagctaagaaacttattgtttcccctg
tctctatccttcctgatgttccccttgcactcaacttttttcacactgtt
ggacacatgaaagcattccaaccaagcagcccaagttgatctctctctat
ttggaacatcatctgagttttatagtgtataccaaaacaggtaacattta
aagctaattaattgaggttaaataaaatcagttctgcaaagtgcccatta
ttgaacagtagtataccaatgcataagcatattactgcaaataattaaaa
ttaatttctttcgtggcatcattatttgcctttttagctcttgggggtag
ctttttctgctgggaggttcatgtccagccaattcatgtaaagaaaa

gaattcttcaggctgttgggacaatatcaggtatgctgaagaccagcatc
ctgtaccagatggagaatgctgaactaccagcctcttgttctagatgata
gtgtctcctgtcagaactgatacctggtctcagctttttcaatttgaaaa
tagcctttgttgccaacacagatggcatgtgaatcaatgtaataaatcct
gcatatacacatatatgtacatatacacatgtgtgtgtttgtgtgtgtgt
gtgtgtgtgtgtgctacactctgctcttatagagcccctagatcaggaca
gggattgaacatcaggttttctgcacatccacttccagtgcattgttctg
agatatatcataaggattcttctatcagaagccagttatgaaaggctaaa
cacatgcaaatgaattttctagagatggcccataattttttgttgtctgt
gataggtgatctctatgaatgcaccgtccttagaaacttcagcctagggc
cactgcttgttactaatattcctttcctattactattttatgcctaatga
ttcctggacatcagcctaccttattgggaaaatttccttcagatctacct
gaaaatgaactttcatgagctattgctatttaggtgaaataatgattttg
tagaataattgattttaatcaaataaatttaggaagaagcttttagaaga
ttgttttagttattttgccagaaagatgtaataaagttagagtcaagaat
agaacatgcatggtcctcataggatagtgaggcaaggttgcataataggg
aatattatgacctttcacaattacactaaagagagaaatagactttggga
caaacctgggacaaaaaaaaccactttattctaggtcaggttcaaggatg
aaggccacaggtgttcacaatgataaagcaaggccacatgagattgttgc
ttgaactaataatgagcttattatatgaaacataaggaaagtagctaaga
caataaatagtattttcttagtaatatcttatgctgaaagaagggtgttt
ttctgaattgtgtgaaacactttgacacaataaacagtacatctcaaggt
tttttttacatttcactgctactaatgttttctttggcgtgatttcggaa
ccttcctcctctctaagagcaaaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_117690647_117691787
seq2: B6Ng01-342O19.b_49_1195

seq1  GAATTCTCAGCTACTACTCCAGCATCATGGCTACTTGCCTGCTACCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTACTACTCCAGCATCATGGCTACTTGCCTGCTACCTTGC  50

seq1  TGAGCACCACGATGGTCATGGACTGTATCACTCTGGAACTGTGAGCCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACCACGATGGTCATGGACTGTATCACTCTGGAACTGTGAGCCTCA  100

seq1  AATTCAAAGGCTTGTTTTATAAGTTGCCTAGATCATGATGTTTTTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAGGCTTGTTTTATAAGTTGCCTAGATCATGATGTTTTTTTTCA  150

seq1  CATCAATTGAGAAGTAACTTAAAAAACTACCTACATCTTTCTGGGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTGAGAAGTAACTTAAAAAACTACCTACATCTTTCTGGGAAGAA  200

seq1  TTTTCTATATTAGAGATATGGAAGCTTATTACTGTTAGAAAACCCCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATATTAGAGATATGGAAGCTTATTACTGTTAGAAAACCCCCCAC  250

seq1  ACACACATATGCAGGAACACTCACTAATGACCTTTTCTTCTATCTAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATATGCAGGAACACTCACTAATGACCTTTTCTTCTATCTAAATT  300

seq1  TAAAAACCTTGGTGAGACTCCTCTGCAAGTTTTAACTGCTACATCAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACCTTGGTGAGACTCCTCTGCAAGTTTTAACTGCTACATCAGCTA  350

seq1  GAGACTGACCCTTTAAATAAAGATTCAACACTGCAAAATCATGACTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGACCCTTTAAATAAAGATTCAACACTGCAAAATCATGACTAAAA  400

seq1  AAGCCCACCACTTCCTGACCAGCTGGTCTGCTGGCACAAGGGAAGACATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCACCACTTCCTGACCAGCTGGTCTGCTGGCACAAGGGAAGACATC  450

seq1  TTGCCTTGCTTGCTTCCACATTTGATTTTTTTTTTCTGATATATTTCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTGCTTGCTTCCACATTTGATTTTTTTTTTCTGATATATTTCAGA  500

seq1  GGCATTCTCTTTTTTTCAATATGTTTGTTTCCTCAAAGTCAGTGCAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCTCTTTTTTTCAATATGTTTGTTTCCTCAAAGTCAGTGCAGCTG  550

seq1  AGGAAATTGAGCTGCAGGAGAGAAGCAGCGTGTGATTGGTACGCCTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATTGAGCTGCAGGAGAGAAGCAGCGTGTGATTGGTACGCCTGCAC  600

seq1  AGTCAACACAATCATTCCCTATGTCTGGCTTCCAGGACTTTTATCATCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAACACAATCATTCCCTATGTCTGGCTTCCAGGACTTTTATCATCAT  650

seq1  TGAGGAGAATTACAGAGCTAAATGCATATGTCTTTGTGGTCAAACGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAATTACAGAGCTAAATGCATATGTCTTTGTGGTCAAACGCTGA  700

seq1  ATTAGATTTAAAGACAGTCTATAGATGGGAAAATGGTGAGGTATTTTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTTAAAGACAGTCTATAGATGGGAAAATGGTGAGGTATTTTGAC  750

seq1  TCATGAGCTGTACCATAGGAAATGAGCTAAGAAACTTATTGTTTCCCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGAGCTGTACCATAGGAAATGAGCTAAGAAACTTATTGTTTCCCCTG  800

seq1  TCTCTATCCTTCCTGATGTTCCCCTTGCACTCAAC-TTTTTCACACTGTT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTCTATCCTTCCTGATGTTCCCCTTGCACTCAACTTTTTTCACACTGTT  850

seq1  GGACACATGAAAGCATTCCAACCAAGCAGCCCAAGTTGATCTCTCTCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATGAAAGCATTCCAACCAAGCAGCCCAAGTTGATCTCTCTCTAT  900

seq1  TTGGAACATCATCTGAGTTTTATAGTGTATACCAAACAAGGTAACAATTA  949
      ||||||||||||||||||||||||||||||||||||  |||||||| |||
seq2  TTGGAACATCATCTGAGTTTTATAGTGTATACCAAAACAGGTAACATTTA  950

seq1  AAGCTAATTAAATGAGGTTAAATAAAATCAGTTCTGCAAAAGTGCCCATT  999
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AAGCTAATTAATTGAGGTTAAATAAAATCAGTTCTGC-AAAGTGCCCATT  999

seq1  A-TGAACAGTAGTATACCAATGCAT-AGCATTATTACTGCAAATAATTAA  1047
      | ||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  ATTGAACAGTAGTATACCAATGCATAAGCA-TATTACTGCAAATAATTAA  1048

seq1  AATTAATTTCTTCTGTGCCTTCATTTATTTG-CTTTTTAGCTCTTTGGGG  1096
      ||||||||||||  ||| | ||| ||||||| ||||||||||||| ||||
seq2  AATTAATTTCTTTCGTGGCATCA-TTATTTGCCTTTTTAGCTCTTGGGGG  1097

seq1  T-GC--TTTCTGCT-GGAGGTTCCATGT-CAGCCAATTCATG-AAAGAAA  1140
      | ||  |||||||| ||||||| ||||| ||||||||||||| |||||||
seq2  TAGCTTTTTCTGCTGGGAGGTT-CATGTCCAGCCAATTCATGTAAAGAAA  1146

seq1  A  1141
      |
seq2  A  1147


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