BAC Information

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BAC

Clone NameB6Ng01-343I12
Chromosome1 (Build37)
Map Location 23,243,830 - 23,381,426
singlet/doubletdoublet
Overlap geneEG623356, Ogfrl1
Upstream geneRims1, Rims1, EG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4
Downstream geneLOC665782, B3gat2, Smap1, 1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343I12.bB6Ng01-343I12.g
ACCGA126283GA126284
length1,0981,135
definitionB6Ng01-343I12.b B6Ng01-343I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,380,327 - 23,381,426)(23,243,830 - 23,244,978)
sequence
gaattctcctcactttggtaaaaggagtaaaatattagtgttgaggcctc
catttccttggttgtaagtaacactgttaaattaggaggttcacccgaag
ctttgaaactatggacataaagcgttaggtcctgactggagactcactgg
cttatacctcaggtgaaagtttgctacgtaagctaatgtcagcacaagac
aggcctctgcctatctaatgcagataaccatatctggatggtttctctgt
catactgttgaagaaggctatctgcaagtaaggctttggcaaacagtggt
cacacctcaccctttgggtgcccacctctatccttttgttatttttgctt
ggaatgacatgcttgtttggtacgttgttgttgaagtagtaagtcatgaa
gagaatgtgagcaaaggcttaaagcctccctggggtatcattgttaggtc
tttttgtttatagcccaaaccagagccctttctggaggctttatttaatt
aggttgtctcttagcctctgatgaagaatggcctgcactcacagccttcc
cactctgtcccaaactagcaagctctctccctctcatccaatagctttct
gctttcccagctctgggtgaactctcctagggggaaaaaattaaaaatta
aaaaaaaattttttttacatgtagatgcctgcttgtctgtgggtgtgcca
cacgtatgtacaggtgtgcctctagaagtcagaagagggtgtcagatccc
ctggaactggtgtcctcaggcagttgtgaactgcctagtgtgggcactag
gagccaaacctggctcctctgtaagactttcctgtttatttatctttgag
accagatctctgagtctaggttgactccaaatttgccaccattttttggc
accatcttccaaattctgggattgcagacacatagtatgattttttcatc
accacaagtttttattgattaggtttgagcagaggataagcgtgatatgg
acgtatctcctctatttttcatttggattctttgtgatccattctaatgt
catgctcatctgtgattaagctgggagaacatcttggagctttttgca
gaattcatttgtaatgttaggggaaaaggtgtttgttgtcttttcctaga
agtcaaggggctaagttaaaaaaaaaatgctgatttgtgagaaagggaac
ctggggtggatgattgaattcaaatataaataaaagatgctttggtctgt
gagagttgagctatctggatgagttgtctggaaaactcctgagagagagc
tatctcaagcaaaacacaaggctatcagcttgtaccacatgattgaccta
gcgttgttcttttcatgctcccaaataccctttcctcaggacccctgacc
aagccaaggtaaataataataatgtcaattaattatactgaaaattcaat
gaactatttgtggagaagaatctgagatatagtaagcatacaaaagtgtt
tttattactatttgtagcagtcttcttttgtttgtttctacctttctttc
taggaagggcagattcccctttggtaatgtagaccaacaatgagtcacaa
gacactgcagttatgtgtatctcttctcaacttgtcactaaaaacattaa
gacattaataaaaggaagatatccctgtgcatttttcctctaagataaca
gatcttcattaaatccattttataattttctcaataagcaagctgctcta
attgaaaacagataatacttaatgcaattatttaaaaatgttcaaagttc
atgaaaatgattaccagcttcctaaatggaaatatttaatcaataattct
aattgtgcaacactgaatttcagggtgttctaattagtggagtggtagct
cttgctttgcctattcctctggatggacctatagggatatgcctgcagag
actcatctcagagcaagcagctgatatggaaaggaactccacagagagct
acaagtgccttctcacagatacagtatactcaggggctagaaggggaaat
gctctacacagaaatcaccggtattacatgttcatttctgggtgacttcc
tgtctgatcactgtagtgctttttgtcatctggttttccataaatagaat
agtctagatattcgtaattgtgtctaagaccctaggaaatttatgaaaga
aattgtgagtgctttgttgttcctcagaaccaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_23380327_23381426
seq2: B6Ng01-343I12.b_48_1145 (reverse)

seq1  TGCAAAAAGCT-CAAGATG-TCTCCCAGCTTTAATCACAGATGAGCAATG  48
      ||||||||||| ||||||| ||||||||| |||||||||||||||| |||
seq2  TGCAAAAAGCTCCAAGATGTTCTCCCAGC-TTAATCACAGATGAGC-ATG  48

seq1  ACATTAAGAATGGATCACAAAAGAATCCAAATG-AAAATAGAGGAGATAC  97
      ||||| |||||||||||| |||||||||||||| ||||||||||||||||
seq2  ACATT-AGAATGGATCAC-AAAGAATCCAAATGAAAAATAGAGGAGATAC  96

seq1  GTCCATATCACGCCTTATCCTCTGCTCAAACCTAATCAATAAAAACTTGT  147
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCCATATCACG-CTTATCCTCTGCTCAAACCTAATCAATAAAAACTTGT  145

seq1  GGTGATGAAAAAATCATACTATGTGTCTGCAATCCCAGAATTTGGAAGAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGAAAAAATCATACTATGTGTCTGCAATCCCAGAATTTGGAAGAT  195

seq1  GGTGCCAAAAAATGGTGGCAAATTTGGAGTCAACCTAGACTCAGAGATCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAAAAAATGGTGGCAAATTTGGAGTCAACCTAGACTCAGAGATCT  245

seq1  GGTCTCAAAGATAAATAAACAGGAAAGTCTTACAGAGGAGCCAGGTTTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCAAAGATAAATAAACAGGAAAGTCTTACAGAGGAGCCAGGTTTGG  295

seq1  CTCCTAGTGCCCACACTAGGCAGTTCACAACTGCCTGAGGACACCAGTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGTGCCCACACTAGGCAGTTCACAACTGCCTGAGGACACCAGTTC  345

seq1  CAGGGGATCTGACACCCTCTTCTGACTTCTAGAGGCACACCTGTACATAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGATCTGACACCCTCTTCTGACTTCTAGAGGCACACCTGTACATAC  395

seq1  GTGTGGCACACCCACAGACAAGCAGGCATCTACATGTAAAAAAAATTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGCACACCCACAGACAAGCAGGCATCTACATGTAAAAAAAATTTTT  445

seq1  TTTTAATTTTTAATTTTTTCCCCCTAGGAGAGTTCACCCAGAGCTGGGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTTTTAATTTTTTCCCCCTAGGAGAGTTCACCCAGAGCTGGGAA  495

seq1  AGCAGAAAGCTATTGGATGAGAGGGAGAGAGCTTGCTAGTTTGGGACAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAAGCTATTGGATGAGAGGGAGAGAGCTTGCTAGTTTGGGACAGA  545

seq1  GTGGGAAGGCTGTGAGTGCAGGCCATTCTTCATCAGAGGCTAAGAGACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGGCTGTGAGTGCAGGCCATTCTTCATCAGAGGCTAAGAGACAA  595

seq1  CCTAATTAAATAAAGCCTCCAGAAAGGGCTCTGGTTTGGGCTATAAACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTAAATAAAGCCTCCAGAAAGGGCTCTGGTTTGGGCTATAAACAA  645

seq1  AAAGACCTAACAATGATACCCCAGGGAGGCTTTAAGCCTTTGCTCACATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCTAACAATGATACCCCAGGGAGGCTTTAAGCCTTTGCTCACATT  695

seq1  CTCTTCATGACTTACTACTTCAACAACAACGTACCAAACAAGCATGTCAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCATGACTTACTACTTCAACAACAACGTACCAAACAAGCATGTCAT  745

seq1  TCCAAGCAAAAATAACAAAAGGATAGAGGTGGGCACCCAAAGGGTGAGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCAAAAATAACAAAAGGATAGAGGTGGGCACCCAAAGGGTGAGGT  795

seq1  GTGACCACTGTTTGCCAAAGCCTTACTTGCAGATAGCCTTCTTCAACAGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACTGTTTGCCAAAGCCTTACTTGCAGATAGCCTTCTTCAACAGT  845

seq1  ATGACAGAGAAACCATCCAGATATGGTTATCTGCATTAGATAGGCAGAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGAGAAACCATCCAGATATGGTTATCTGCATTAGATAGGCAGAGG  895

seq1  CCTGTCTTGTGCTGACATTAGCTTACGTAGCAAACTTTCACCTGAGGTAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTGTGCTGACATTAGCTTACGTAGCAAACTTTCACCTGAGGTAT  945

seq1  AAGCCAGTGAGTCTCCAGTCAGGACCTAACGCTTTATGTCCATAGTTTCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTGAGTCTCCAGTCAGGACCTAACGCTTTATGTCCATAGTTTCA  995

seq1  AAGCTTCGGGTGAACCTCCTAATTTAACAGTGTTACTTACAACCAAGGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCGGGTGAACCTCCTAATTTAACAGTGTTACTTACAACCAAGGAA  1045

seq1  ATGGAGGCCTCAACACTAATATTTTACTCCTTTTACCAAAGTGAGGAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGCCTCAACACTAATATTTTACTCCTTTTACCAAAGTGAGGAGAA  1095

seq1  TTC  1100
      |||
seq2  TTC  1098

seq1: chr1_23243830_23244978
seq2: B6Ng01-343I12.g_66_1200

seq1  GAATTCATTTGTAATGTTAGGGGAAAAGGTGTTTGTTGTCTTTTCCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTAATGTTAGGGGAAAAGGTGTTTGTTGTCTTTTCCTAGA  50

seq1  AGTCAAGGGGCTAAGTTAAAAAAAAAATGCTGATTTGTGAGAAAGGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGGGCTAAGTTAAAAAAAAAATGCTGATTTGTGAGAAAGGGAAC  100

seq1  CTGGGGTGGATGATTGAATTCAAATATAAATAAAAGATGCTTTGGTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTGGATGATTGAATTCAAATATAAATAAAAGATGCTTTGGTCTGT  150

seq1  GAGAGTTGAGCTATCTGGATGAGTTGTCTGGAAAACTCCTGAGAGAGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGAGCTATCTGGATGAGTTGTCTGGAAAACTCCTGAGAGAGAGC  200

seq1  TATCTCAAGCAAAACACAAGGCTATCAGCTTGTACCACATGATTGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAAGCAAAACACAAGGCTATCAGCTTGTACCACATGATTGACCTA  250

seq1  GCGTTGTTCTTTTCATGCTCCCAAATACCCTTTCCTCAGGACCCCTGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGTTCTTTTCATGCTCCCAAATACCCTTTCCTCAGGACCCCTGACC  300

seq1  AAGCCAAGGTAAATAATAATAATGTCAATTAATTATACTGAAAATTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGGTAAATAATAATAATGTCAATTAATTATACTGAAAATTCAAT  350

seq1  GAACTATTTGTGGAGAAGAATCTGAGATATAGTAAGCATACAAAAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTTGTGGAGAAGAATCTGAGATATAGTAAGCATACAAAAGTGTT  400

seq1  TTTATTACTATTTGTAGCAGTCTTCTTTTGTTTGTTTCTACCTTTCTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTACTATTTGTAGCAGTCTTCTTTTGTTTGTTTCTACCTTTCTTTC  450

seq1  TAGGAAGGGCAGATTCCCCTTTGGTAATGTAGACCAACAATGAGTCACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGGCAGATTCCCCTTTGGTAATGTAGACCAACAATGAGTCACAA  500

seq1  GACACTGCAGTTATGTGTATCTCTTCTCAACTTGTCACTAAAAACATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGCAGTTATGTGTATCTCTTCTCAACTTGTCACTAAAAACATTAA  550

seq1  GACATTAATAAAAGGAAGATATCCCTGTGCATTTTTCCTCTAAGATAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTAATAAAAGGAAGATATCCCTGTGCATTTTTCCTCTAAGATAACA  600

seq1  GATCTTCATTAAATCCATTTTATAATTTTCTCAATAAGCAAGCTGCTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCATTAAATCCATTTTATAATTTTCTCAATAAGCAAGCTGCTCTA  650

seq1  ATTGAAAACAGATAATACTTAATGCAATTATTTAAAAATGTTCAAAGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAACAGATAATACTTAATGCAATTATTTAAAAATGTTCAAAGTTC  700

seq1  ATGAAAATGATTACCAGCTTCCTAAATGGAAATATTTAATCAATAATTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGATTACCAGCTTCCTAAATGGAAATATTTAATCAATAATTCT  750

seq1  AATTGTGCAACACTGAATTTCAGGGTGTTCTAATTAGTGGAGTGGTAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGCAACACTGAATTTCAGGGTGTTCTAATTAGTGGAGTGGTAGCT  800

seq1  CTTGCTTTGCCTATTCCTCTGGATGGACCTATAGGGATATGCCTGCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTGCCTATTCCTCTGGATGGACCTATAGGGATATGCCTGCAGAG  850

seq1  ACTCATCTCAGAGCAAGCAGCTGATATGG-AAGGAACTCCACAGAGAGCT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACTCATCTCAGAGCAAGCAGCTGATATGGAAAGGAACTCCACAGAGAGCT  900

seq1  ACAAGTGCCTTCTCACAGATACAGTATACTCAGGGGCTAAGAAAGGGGAA  949
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  ACAAGTGCCTTCTCACAGATACAGTATACTCAGGGGCTA--GAAGGGGAA  948

seq1  ATGCTCTACACAGAAATCACCGGTATTACATGTTCATTTTCTGGGTGACT  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATGCTCTACACAGAAATCACCGGTATTACATGTTCA-TTTCTGGGTGACT  997

seq1  TCCTGTCTGATCACTGTTAGTGCTTTTTGGTCATTCTGGTTTTCCATAAA  1049
      |||||||||||||||| ||||||||||| |||| ||||||||||||||||
seq2  TCCTGTCTGATCACTG-TAGTGCTTTTT-GTCA-TCTGGTTTTCCATAAA  1044

seq1  ATAAGGATAGTCTTAGATATTCGTAAATTGTGTCTAAGACACTTAGGGGA  1099
         || |||||| ||||||||||| ||||||||||||||| ||    |||
seq2  --TAGAATAGTC-TAGATATTCGT-AATTGTGTCTAAGACCCT---AGGA  1087

seq1  AATTTAATGAAAGAAAATTGTGAAGTGCTTTG-TGTTCTACAGAACAAGG  1148
      ||||| ||||||| |||||||| ||||||||| |||||  |||||| |||
seq2  AATTT-ATGAAAG-AAATTGTG-AGTGCTTTGTTGTTCCTCAGAACCAGG  1134

seq1  G  1149
      |
seq2  G  1135