BAC Information

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BAC

Clone NameB6Ng01-343K01
Chromosome1 (Build37)
Map Location 104,394,829 - 104,537,803
singlet/doubletdoublet
Overlap geneLOC100041056
Upstream genenone
Downstream geneLOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343K01.bB6Ng01-343K01.g
ACCGA126357GA126358
length1,1671,174
definitionB6Ng01-343K01.b B6Ng01-343K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,394,829 - 104,395,987)(104,536,621 - 104,537,803)
sequence
gaattcatttcagacagccttcagttttagcttatgcaaaaagctaaaag
cttctctctttcttttcaacaaatcattttaagttatagctgagaatcct
cgtgaagcttctctcagacaaattacaatttcttttgggtacaattgttc
gagttggtactgccatggatcacttcaatgaaacttatgttctactcaaa
acattatttcagttcagtaatctagggtggggtcgatgtttcagccagta
aaaggtatgccactcaagcatgaagaccagaactaaatggccagcatcca
gatagttattatatttaaacctctgggcagggtgacacaatcttgatttc
tcaggactggtgaagtggaggcaggtgggtccttttggaagctacattgg
ggtcccacattggagaagtttcaggtgttatatcatctaatacagtaatt
ctcaaactgcagatggagactttttgggggtcaaattgctctttcacaag
ggtcacttgagaacatctgaaaatacaaatatttacaatttaataaagtg
gtaaaattacagttacaaagtagaaatgataataatttcatgcttgggag
tcaccacaacttggggaactgtattgaagtatcaagcattaggagagtta
aaagccactgctgtaaaaagaaactcaagcaaacagctgatcaaccaaac
aaaagaggtatgcatccagtttagtcttttgggctctactccagatgtat
atgtgccttttctcaaattgttcttgtgcatgtgtgcaaatgcacatgca
catgaacatgagttacagagtgagagagcccgggctacacagagaaatcc
tgtctcaaaaaacaaaacaaacaaaaaaaaaaacaaacaaacaaacaaaa
ggatatccagaagttacactcttttatttgatggaatacaggttgatccc
tggagttaactattccatgtttcactggtgacttggagaactagttgcat
cctgtgattaatgttttagaaaaacacaccatttacaaaatgtcattgag
ttccacaatttctaggggaggtgggggacaaatattcatcatccctagat
agaagtggccaaatgaccagggtcaaagaaaacaggttcacctaagtccc
agttactggaacaatgt

gaattccccagataacaccacataccagcatgagcattaaagactcaaga
agagaagtctgaatttctgttcctttaagcccacacttaacttacacatg
gaacagatttatatgaaaataaatgaggctatcaacgattctatattata
gaactctggtgcataataatagttaaagaaagtggagaaagtaagaggag
gtaatggtgtctgagttaggttcttactgtgtcataaagtacataaacaa
aaacaaatgggaatggaatagttactttgcttatagtccattactgaggg
acgtgaggctagaaactaaaacagatcagaaatagagaggcaaaaattaa
agtagagactatagggagtactgcttattggcttctatttccaagggtca
ttcagttttctttttttataaaactcaggacaacctgagtagggatgtcc
tgaccttcaaagtactgagcctcctacataaatcattaaataagaaaact
cctacaaggaattacctacaggccattatgaagggggtcttttctcaaag
gagttttatctattccctgtttactgtattgtaacaagttcaaagaacac
taataagcactggcagtgaggggtgagttgaagtgaacagagtagctgtg
agttaggaatccctatttctgtgcagacatgcctgaaggctgttacatgc
agctatgtaggctttgtgcatatttctaaaagatggaagaaaaacatatg
actgtctacaacaggaaggtgtacagtgtattctagaagaaggatattta
acctcttttgcagagtttaaataaaagtttgccaaagcatcacatggcac
tttcctaatataaaattttatatttttatgtataccaaagaaaacttaaa
tatattatagtattttctatacaaggcaaagaaagtgctcatcacaagac
actgctaaaccttcaaagttatctttttttttctaataattgtttatgaa
accattgggactattggaaatcacaactgctacttcagaggatgatcttc
tttgggggttgtggcttattaatgggttacccatgcctcagtggatgtcc
attacaaaataatgctaatgagcatcaatttggattaatactggtaatca
ctcataatgtgggtttaaaataac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104394829_104395987
seq2: B6Ng01-343K01.b_44_1210

seq1  GAATTCATTTCAGACAGCCTTCAGTTTTAGCTTATGCAAAAAGCTAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCAGACAGCCTTCAGTTTTAGCTTATGCAAAAAGCTAAAAG  50

seq1  CTTCTCTCTTTCTTTTCAACAAATCATTTTAAGTTATAGCTGAGAATCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTTTCTTTTCAACAAATCATTTTAAGTTATAGCTGAGAATCCT  100

seq1  CGTGAAGCTTCTCTCAGACAAATTACAATTTCTTTTGGGTACAATTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAGCTTCTCTCAGACAAATTACAATTTCTTTTGGGTACAATTGTTC  150

seq1  GAGTTGGTACTGCCATGGATCACTTCAATGAAACTTATGTTCTACTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTACTGCCATGGATCACTTCAATGAAACTTATGTTCTACTCAAA  200

seq1  ACATTATTTCAGTTCAGTAATCTAGGGTGGGGTCGATGTTTCAGCCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTTCAGTTCAGTAATCTAGGGTGGGGTCGATGTTTCAGCCAGTA  250

seq1  AAAGGTATGCCACTCAAGCATGAAGACCAGAACTAAATGGCCAGCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATGCCACTCAAGCATGAAGACCAGAACTAAATGGCCAGCATCCA  300

seq1  GATAGTTATTATATTTAAACCTCTGGGCAGGGTGACACAATCTTGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTATTATATTTAAACCTCTGGGCAGGGTGACACAATCTTGATTTC  350

seq1  TCAGGACTGGTGAAGTGGAGGCAGGTGGGTCCTTTTGGAAGCTACATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGGTGAAGTGGAGGCAGGTGGGTCCTTTTGGAAGCTACATTGG  400

seq1  GGTCCCACATTGGAGAAGTTTCAGGTGTTATATCATCTAATACAGTAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCACATTGGAGAAGTTTCAGGTGTTATATCATCTAATACAGTAATT  450

seq1  CTCAAACTGCAGATGGAGACTTTTTGGGGGTCAAATTGCTCTTTCACAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTGCAGATGGAGACTTTTTGGGGGTCAAATTGCTCTTTCACAAG  500

seq1  GGTCACTTGAGAACATCTGAAAATACAAATATTTACAATTTAATAAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTGAGAACATCTGAAAATACAAATATTTACAATTTAATAAAGTG  550

seq1  GTAAAATTACAGTTACAAAGTAGAAATGATAATAATTTCATGCTTGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATTACAGTTACAAAGTAGAAATGATAATAATTTCATGCTTGGGAG  600

seq1  TCACCACAACTTGGGGAACTGTATTGAAGTATCAAGCATTAGGAGAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACAACTTGGGGAACTGTATTGAAGTATCAAGCATTAGGAGAGTTA  650

seq1  AAAGCCACTGCTGTAAAAAGAAACTCAAGCAAACAGCTGATCAACCAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCACTGCTGTAAAAAGAAACTCAAGCAAACAGCTGATCAACCAAAC  700

seq1  AAAAGAGGTATGCATCCAGTTTAGTCTTTTGGGCTCTACTCCAGATGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGGTATGCATCCAGTTTAGTCTTTTGGGCTCTACTCCAGATGTAT  750

seq1  ATGTGCCTTTTCTCAAATTGTTCTTGTGCATGTGTGCAAATGCACATGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCCTTTTCTCAAATTGTTCTTGTGCATGTGTGCAAATGCACATGCA  800

seq1  CATGAACATGAGTTACAGAGTGAGAGAGCCCGGGCTACACAGAGAAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACATGAGTTACAGAGTGAGAGAGCCCGGGCTACACAGAGAAATCC  850

seq1  TGTCTCAAAAAAACAAAACAAAACAAAAAAAAAAACAAAACAAACAAACA  900
      |||||| |||||||||||| |||||||||||||||| |||||||||||| 
seq2  TGTCTC-AAAAAACAAAAC-AAACAAAAAAAAAAAC-AAACAAACAAAC-  896

seq1  AAAAGGATATCCAGAAGTTACACTCTTTTATTTGATGGAATACAGGTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATATCCAGAAGTTACACTCTTTTATTTGATGGAATACAGGTTGA  946

seq1  TCCCTGGAGTTAACTATTCCATGTTTCACTGGTGACTT-GAGAACTAGTT  999
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCCTGGAGTTAACTATTCCATGTTTCACTGGTGACTTGGAGAACTAGTT  996

seq1  GCATCCTGTGATTAATGTTTTAG-AAAACACACCA-TTACAAAATGTCAT  1047
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  GCATCCTGTGATTAATGTTTTAGAAAAACACACCATTTACAAAATGTCAT  1046

seq1  TGAGTTCCAC-ATTTCTA-GGGAGGT-GGGGACAAATATTCATTCAT-CC  1093
      |||||||||| ||||||| ||||||| ||||||||||||||| |||| ||
seq2  TGAGTTCCACAATTTCTAGGGGAGGTGGGGGACAAATATTCA-TCATCCC  1095

seq1  TAGATAG-AGTG--CAAATGAC--AGGTCAAAG-AAACAGTTTCACCTAA  1137
      ||||||| ||||  ||||||||   |||||||| |||||| |||||||||
seq2  TAGATAGAAGTGGCCAAATGACCAGGGTCAAAGAAAACAGGTTCACCTAA  1145

seq1  GTCACAGTAACTGAACCAATGT  1159
      ||| |||| |||| | ||||||
seq2  GTCCCAGTTACTGGAACAATGT  1167


seq1: chr1_104536621_104537803
seq2: B6Ng01-343K01.g_64_1237 (reverse)

seq1  GTTATTTATAAA--CACATTATTTAAATTAATTACCACTAATTAATCCAA  48
      ||||||| ||||  ||||||||    | | ||||||| | ||||||||||
seq2  GTTATTT-TAAACCCACATTAT---GAGTGATTACCAGT-ATTAATCCAA  45

seq1  ATATTGATGCTCATTAGCATATTTTTGT-ATGGACATCCACTTGAGCATG  97
        ||||||||||||||||||  |||||| |||||||||||||   |||||
seq2  --ATTGATGCTCATTAGCATTATTTTGTAATGGACATCCACTGAGGCATG  93

seq1  GGTAACCCATTAAT-AGCCACA--CCCCAAAGAAGATTCATTCCTCTGAA  144
      |||||||||||||| |||||||  |||||||||||| ||| |||||||||
seq2  GGTAACCCATTAATAAGCCACAACCCCCAAAGAAGA-TCA-TCCTCTGAA  141

seq1  GTAGCAGTTGTGATTTTCCAATAGTTCCCAATGGTTTTCATTAAACAATT  194
      ||||||||||||| |||||||||| ||||||||| ||||| |||||||||
seq2  GTAGCAGTTGTGA-TTTCCAATAG-TCCCAATGG-TTTCA-TAAACAATT  187

seq1  ATTAGAAAAAAAAAAGATAACTTTGAAGGTTTAGCAGTTGTCTTGTGATG  244
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTAG-AAAAAAAAAGATAACTTTGAAGGTTTAGCAG-TGTCTTGTGATG  235

seq1  AGCACTTTCTTTGCCTTGTATAGAAAATACTATAATATATTTAAGTTTTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTCTTTGCCTTGTATAGAAAATACTATAATATATTTAAGTTTTC  285

seq1  TTTGGTATACATAAAAATATAAAATTTTATATTAGGAAAGTGCCATGTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATACATAAAAATATAAAATTTTATATTAGGAAAGTGCCATGTGA  335

seq1  TGCTTTGGCAAACTTTTATTTAAACTCTGCAAAAGAGGTTAAATATCCTT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGCAAACTTTTATTTAAACTCTGCAAAAGAGGTTAAATATCCTT  385

seq1  CTTCTAGAATACACTGTACACCTTCCTGTTGTAGACAGTCATATGTTTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAATACACTGTACACCTTCCTGTTGTAGACAGTCATATGTTTTT  435

seq1  CTTCCATCTTTTAGAAATATGCACAAAGCCTACATAGCTGCATGTAACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCTTTTAGAAATATGCACAAAGCCTACATAGCTGCATGTAACAG  485

seq1  CCTTCAGGCATGTCTGCACAGAAATAGGGATTCCTAACTCACAGCTACTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGCATGTCTGCACAGAAATAGGGATTCCTAACTCACAGCTACTC  535

seq1  TGTTCACTTCAACTCACCCCTCACTGCCAGTGCTTATTAGTGTTCTTTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTTCAACTCACCCCTCACTGCCAGTGCTTATTAGTGTTCTTTGA  585

seq1  ACTTGTTACAATACAGTAAACAGGGAATAGATAAAACTCCTTTGAGAAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTACAATACAGTAAACAGGGAATAGATAAAACTCCTTTGAGAAAA  635

seq1  GACCCCCTTCATAATGGCCTGTAGGTAATTCCTTGTAGGAGTTTTCTTAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCCTTCATAATGGCCTGTAGGTAATTCCTTGTAGGAGTTTTCTTAT  685

seq1  TTAATGATTTATGTAGGAGGCTCAGTACTTTGAAGGTCAGGACATCCCTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGATTTATGTAGGAGGCTCAGTACTTTGAAGGTCAGGACATCCCTA  735

seq1  CTCAGGTTGTCCTGAGTTTTATAAAAAAAGAAAACTGAATGACCCTTGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTGTCCTGAGTTTTATAAAAAAAGAAAACTGAATGACCCTTGGA  785

seq1  AATAGAAGCCAATAAGCAGTACTCCCTATAGTCTCTACTTTAATTTTTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGCCAATAAGCAGTACTCCCTATAGTCTCTACTTTAATTTTTGC  835

seq1  CTCTCTATTTCTGATCTGTTTTAGTTTCTAGCCTCACGTCCCTCAGTAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTATTTCTGATCTGTTTTAGTTTCTAGCCTCACGTCCCTCAGTAAT  885

seq1  GGACTATAAGCAAAGTAACTATTCCATTCCCATTTGTTTTTGTTTATGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATAAGCAAAGTAACTATTCCATTCCCATTTGTTTTTGTTTATGTA  935

seq1  CTTTATGACACAGTAAGAACCTAACTCAGACACCATTACCTCCTCTTACT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGACACAGTAAGAACCTAACTCAGACACCATTACCTCCTCTTACT  985

seq1  TTCTCCACTTTCTTTAACTATTATTATGCACCAGAGTTCTATAATATAGA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACTTTCTTTAACTATTATTATGCACCAGAGTTCTATAATATAGA  1035

seq1  ATCGTTGATAGCCTCATTTATTTTCATATAAATCTGTTCCATGTGTAAGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTGATAGCCTCATTTATTTTCATATAAATCTGTTCCATGTGTAAGT  1085

seq1  TAAGTGTGGGCTTAAAGGAACAGAAATTCAGACTTCTCTTCTTGAGTCTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTGGGCTTAAAGGAACAGAAATTCAGACTTCTCTTCTTGAGTCTT  1135

seq1  TAATGCTCATGCTGGTATGTGGTGTTATCTGGGGAATTC  1183
      |||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTCATGCTGGTATGTGGTGTTATCTGGGGAATTC  1174


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