BAC Information

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BAC

Clone NameB6Ng01-343M21
Chromosome1 (Build37)
Map Location 136,245,065 - 136,352,444
singlet/doubletdoublet
Overlap geneTmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12
Upstream geneLOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382
Downstream geneRabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-343M21.bB6Ng01-343M21.g
ACCGA126483GA126484
length7961,119
definitionB6Ng01-343M21.b B6Ng01-343M21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,351,657 - 136,352,444)(136,245,065 - 136,246,194)
sequence
gaattctttcctcccaggttaaaccttctcccggggcaggcggcagctgc
tccggagaagccgagaaggcagcgctatgcctgcagcgccccagctcatc
tcctaccgacccgggctggggggggtacccgggttgggggaaggccgcgc
ccccggctgagggcagagggaaaggccgtgtgtcagggccgcgctcactc
accagggctcctgggccgtccgagccgaggtgctaggcgccgggctccca
ggcggctgagcagccggagcgccgccgctgccgcccggaccagccgctgc
ggagcagtctccgtggtaaactccagtctcggagtacggcgaccgcgcgg
catgatgacgtcacgccacgggaggggcgggcctctcctgggttacgtca
ccttaggaggccgagccaagaagtcctgcttacctgagagctcagaaaaa
gagacctgagagtgggtagacgggtgggtggggagtgccgcgtgtgacag
tgcgctggaggccagaaggacccaagactggcggtccccacgcggtatgg
caggcgctaggctgcgttcctgccacactcgggagaccccacggggtttc
agagttctctaggtcggtttctgaagaatcaggctccgcttcaccatagg
gaggacttttcccatccccggataaccacagggtcctaaatgtgcctgtt
caccatgaggcgattgctttcctttcactccaaggaaaacgaacttgtgg
attgactgagccacccgcaaacgggtcgcaataggggtaaactgca
gaattctgataatgtgctgatgaacaagtcaggcaagatctgtaaaacct
aagcctgatccatttttgtgtaaaattttccaagtatttagatggaggtg
tagtggctattcctggttgtcaacgtgacaatatttggaatgaactacaa
tccggaattggaaggctcaccagtgacccttatctggaggcttggagatc
cttatctggatcttggtttgaagatcttgagccatagtggctatggattc
cagaagattgaatctctgagtttaaggaacacacctttaatctgggctac
gcctttcatctgggattaaaggtgtggtgggacacacctttaatctgggc
tacaccttctgctggagacaatataaggacattggaagaagggagtctag
ctcttgctcttgctccttcgcctgcttgctgcgtgagactgagtaactgc
tagatccttggacttccattcacagctgcgactgaaccattgttgggaat
tgggctgccgactgtaagtcatcaataaattcctttactaactagagact
atccataagttctgtgactctagagaaccctgactaatacaggaggtttc
tacagaattgatatggcatctatggaataggagtcacggtgaggtcatta
aagcaacttaacctcaatggagagagaaggacccacgataaaaatagaat
catgacacactcagctacaggaaactacctacagaggatgtatgttaacc
tgttaacagacagactttacaaacagtgcccagaaaggtaactggagtta
caggacaatggcagtctatgttacctctactttctgaaaaaaaaatgtat
gcattatttaaattcttcatgatatacacattacctatcattaaaaacta
actttttcatcataaagaacaactccaaacatctctgaacatagcctaag
acacagagagacaatgacaaataaccacttctggctgcctatccaattaa
atattttttcaccattaaaattacagctaaagatacatatatgatttacc
tcacctcaacagacagagctaggtattctattctaacatcattattgcag
cttctgaatgctaaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136351657_136352444
seq2: B6Ng01-343M21.b_47_842 (reverse)

seq1  TGCAGTTT-CCCCTACTGCGACCCATTT-CTGGTGGCTCAGTCAATCCAC  48
      |||||||| |||||| |||||||| ||| | |||||||||||||||||||
seq2  TGCAGTTTACCCCTATTGCGACCCGTTTGCGGGTGGCTCAGTCAATCCAC  50

seq1  AAGTTCCTTTTCCTTGGAGTGAA--GGAAGCAATCGCCTCATGGTG-ACA  95
      |||||| ||||||||||||||||  | ||||||||||||||||||| |||
seq2  AAGTTCGTTTTCCTTGGAGTGAAAGGAAAGCAATCGCCTCATGGTGAACA  100

seq1  GGCACATTTAGGACCCTGTGGTTATCC-GGGATGGG-AAAGTCCTCCCTA  143
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  GGCACATTTAGGACCCTGTGGTTATCCGGGGATGGGAAAAGTCCTCCCTA  150

seq1  TGGTGAAGCGGAGCCTGATTCTTCAGAAACCGACCTAGAGAACTCTGAAA  193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAGCGGAGCCTGATTCTTCAGAAACCGACCTAGAGAACTCTGAAA  200

seq1  CCCCGT-GGGTCTCCCGAGTGTGGCAGGAACGCAGCCTAGCGCCTGCCAT  242
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGGGGTCTCCCGAGTGTGGCAGGAACGCAGCCTAGCGCCTGCCAT  250

seq1  ACCGCGTGGGGACCGCCAGTCTTGGGTCCTTCTGGCCTCCAGCGCACTGT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCGTGGGGACCGCCAGTCTTGGGTCCTTCTGGCCTCCAGCGCACTGT  300

seq1  CACACGCGGCACTCCCCACCCACCCGTCTACCCACTCTCAGGTCTCTTTT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGCGGCACTCCCCACCCACCCGTCTACCCACTCTCAGGTCTCTTTT  350

seq1  TCTGAGCTCTCAGGTAAGCAGGACTTCTTGGCTCGGCCTCCTAAGGTGAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTCTCAGGTAAGCAGGACTTCTTGGCTCGGCCTCCTAAGGTGAC  400

seq1  GTAACCCAGGAGAGGCCCGCCCCTCCCGTGGCGTGACGTCATCATGCCGC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCAGGAGAGGCCCGCCCCTCCCGTGGCGTGACGTCATCATGCCGC  450

seq1  GCGGTCGCCGTACTCCGAGACTGGAGTTTACCACGGAGACTGCTCCGCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCGCCGTACTCCGAGACTGGAGTTTACCACGGAGACTGCTCCGCAG  500

seq1  CGGCTGGTCCGGGCGGCAGCGGCGGCGCTCCGGCTGCTCAGCCGCCTGGG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGGTCCGGGCGGCAGCGGCGGCGCTCCGGCTGCTCAGCCGCCTGGG  550

seq1  AGCCCGGCGCCTAGCACCTCGGCTCGGACGGCCCAGGAGCCCTGGTGAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCGGCGCCTAGCACCTCGGCTCGGACGGCCCAGGAGCCCTGGTGAGT  600

seq1  GAGCGCGGCCCTGACACACGGCCTTTCCCTCTGCCCTCAGCCGGGGGCGC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCGGCCCTGACACACGGCCTTTCCCTCTGCCCTCAGCCGGGGGCGC  650

seq1  GGCCTTCCCCCAACCCGGGTACCCCCCCCAGCCCGGGTCGGTAGGAGATG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCCCCAACCCGGGTACCCCCCCCAGCCCGGGTCGGTAGGAGATG  700

seq1  AGCTGGGGCGCTGCAGGCATAGCGCTGCCTTCTCGGCTTCTCCGGAGCAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGGCGCTGCAGGCATAGCGCTGCCTTCTCGGCTTCTCCGGAGCAG  750

seq1  CTGCCGCCTGCCCCGGGAGAAGGTTTAACCTGGGAGGAAAGAATTC  788
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCCTGCCCCGGGAGAAGGTTTAACCTGGGAGGAAAGAATTC  796

seq1: chr1_136245065_136246194
seq2: B6Ng01-343M21.g_65_1183

seq1  GAATTCTGATAATGTGCTGATGAACAAGTCAGGCAAGATCTGTAAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAATGTGCTGATGAACAAGTCAGGCAAGATCTGTAAAACCT  50

seq1  AAGCCTGATCCATTTTTGTGTAAAATTTTCCAAGTATTTAGATGGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGATCCATTTTTGTGTAAAATTTTCCAAGTATTTAGATGGAGGTG  100

seq1  TAGTGGCTATTCCTGGTTGTCAACGTGACAATATTTGGAATGAACTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCTATTCCTGGTTGTCAACGTGACAATATTTGGAATGAACTACAA  150

seq1  TCCGGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGAATTGGAAGGCTCACCAGTGACCCTTATCTGGAGGCTTGGAGATC  200

seq1  CTTATCTGGATCTTGGTTTGAAGATCTTGAGCCATAGTGGCTATGGATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGGATCTTGGTTTGAAGATCTTGAGCCATAGTGGCTATGGATTC  250

seq1  CAGAAGATTGAATCTCTGAGTTTAAGGAACACACCTTTAATCTGGGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATTGAATCTCTGAGTTTAAGGAACACACCTTTAATCTGGGCTAC  300

seq1  GCCTTTCATCTGGGATTAAAGGTGTGGTGGGACACACCTTTAATCTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCATCTGGGATTAAAGGTGTGGTGGGACACACCTTTAATCTGGGC  350

seq1  TACACCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTCTGCTGGAGACAATATAAGGACATTGGAAGAAGGGAGTCTAG  400

seq1  CTCTTGCTCTTGCTCCTTCGCCTGCTTGCTGCGTGAGACTGAGTAACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTCTTGCTCCTTCGCCTGCTTGCTGCGTGAGACTGAGTAACTGC  450

seq1  TAGATCCTTGGACTTCCATTCACAGCTGCGACTGAACCATTGTTGGGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTTGGACTTCCATTCACAGCTGCGACTGAACCATTGTTGGGAAT  500

seq1  TGGGCTGCCGACTGTAAGTCATCAATAAATTCCTTTACTAACTAGAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGCCGACTGTAAGTCATCAATAAATTCCTTTACTAACTAGAGACT  550

seq1  ATCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACAGGAGGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAAGTTCTGTGACTCTAGAGAACCCTGACTAATACAGGAGGTTTC  600

seq1  TACAGAATTGATATGGCATCTATGGAATAGGAGTCACGGTGAGGTCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAATTGATATGGCATCTATGGAATAGGAGTCACGGTGAGGTCATTA  650

seq1  AAGCAACTTAACCTCAATGGAGAGAGAAGGACCCACGATAAAAATAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTTAACCTCAATGGAGAGAGAAGGACCCACGATAAAAATAGAAT  700

seq1  CATGACACACTCAGCTACAGGAAACTACCTACAGAGGATGTATGTTAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACACTCAGCTACAGGAAACTACCTACAGAGGATGTATGTTAACC  750

seq1  TGTTAACAGACAGACTTTACAAACAGTGCCCAGAAAGGTAACTGGAGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACAGACAGACTTTACAAACAGTGCCCAGAAAGGTAACTGGAGTTA  800

seq1  CAGGACAATGGCAGTCTATGTTACCTCTACTTTCTGAAAAAAAAATGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAATGGCAGTCTATGTTACCTCTACTTTCTGAAAAAAAAATGTAT  850

seq1  GCATTATTTAAATTCTTCATGATATACACATTACCTATCATTAAAAACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCATTATTTAAATTCTTCATGATATACACATTACCTATCATTAAAAACT-  899

seq1  AACTTTTTCATCATAAAGAACAACTCCAAACATCTCTGAACATAAGCCTA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTTTTTCATCATAAAGAACAACTCCAAACATCTCTGAACAT-AGCCTA  948

seq1  AGACACAGAGAAGACAAATGACAAATAACCAACTTTCTGGCTGCCTATCC  1000
      |||||||||| |||| |||||||||||||||   ||||||||||||||||
seq2  AGACACAGAG-AGAC-AATGACAAATAACCA--CTTCTGGCTGCCTATCC  994

seq1  AATTAAATATTTTTCAACCATTAAAAATTACAAGCTAAAAGATACATATA  1050
      ||||||||||||||  |||||| |||||||| |||| |||||||||||||
seq2  AATTAAATATTTTTTCACCATT-AAAATTAC-AGCT-AAAGATACATATA  1041

seq1  TGATTTA-CTCACCTCACACAGGACAGAGCTAGTTA-TCTATTCTAACAT  1098
      ||||||| ||||||||| ||| ||||||||||| || |||||||||||||
seq2  TGATTTACCTCACCTCA-ACA-GACAGAGCTAGGTATTCTATTCTAACAT  1089

seq1  TCCATTATGGCAGCCTCTGAATGCCTAAGGTC  1130
        |||||| ||||| |||||||||  ||||||
seq2  --CATTATTGCAGCTTCTGAATGCTAAAGGTC  1119