BAC Information

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BAC

Clone NameB6Ng01-344L15
Chromosome1 (Build37)
Map Location 7,407,559 - 7,568,897
singlet/doubletdoublet
Overlap genenone
Upstream geneSt18, LOC665015, LOC665027, LOC100039347, LOC435608, Pcmtd1, LOC545302
Downstream geneLOC665063, LOC665069, LOC100039408, Sntg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344L15.bB6Ng01-344L15.g
ACCGA127137GA127138
length1,1661,210
definitionB6Ng01-344L15.b B6Ng01-344L15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,407,559 - 7,408,730)(7,567,683 - 7,568,897)
sequence
gaattccttgactgtaactgtataatccactgtggggttgctatccagct
tggcagcacatgtgccatcccattggccaggggttgcacaaagatgattt
taacatacttagtagaaatagaataaagctcatggaaatctgtttctaaa
tattgaaacaagaggatcttccatggaataaggaaccatggaacagtcat
gtacaggacactagctcaaagaatgtttgtcttgtgactgtgcatttata
gtgatatgaactgaagttacacctgcaaatggttctaacgtgtttaccca
ttaactcttacaactgtctttttgatatcttggctttattttgctcctta
attcttcaaagtcactgatatttatttggcatttgtagcgttttgggtga
aaagctgccctcagtgtggagtaaataatactgttgaagaaaggcatcaa
tgaaaacaacagattaaagaagaaaagaaggcagccatttttatgcaagt
tgaatgtaaatgaacttggtattttgtaggctaagtgattaatgggatga
aatactctggcttttgtaacagatggtttctagaacatgaagctttcagt
cactggtctctgtaatgtaaacatcatattcctgtaactataactgtact
tcgtgctggcccatgactgagcttttcttctggtgtggccagaaagagga
gtggtcaagggatggggaggcacattggtttctctttaggctcaaggatt
tataagagagatagatcattgttaatcagaagttttgaaggtagttagaa
gaaaagacagaaagacgaaatacacagagggatgataaattttgaagtgt
tctgaatgatggaagcactctgctgtggccaaaacaaggctatcagaaat
gttatgagcacgaaagagtgaagtacaagaagataggtggggcttctagg
cacatgggtagctgtaaaaaggctctactatcaatggaaagcaatagatg
atatttatagtaatatgtcaaaattatttgctttcaaacaatacacttcc
cacattatttgtaggagagctagtcgagaggacacagaagaatgggccat
tcaatcaggagaatgcagcattctggaagaaagttgctgaagactcagtt
tgtttaagatgggtgg

gaattctaagtcaagtacttaagacagacttttaaatcattgcactgagg
cagtttacatctactcaatccaaacctgttctccatagtgagactataga
tccataaaaatagaaaccatgctgagtttaagcagtttcaatttcccgtt
ttctagcactggacttgacaaataggcacttagcttgtagctaatcaata
aatgaatgagcagctgtccatgactgtcaatctgtccttagaaggaaact
tagttactgatttcatggctttctatgggataaaacaaatgataacattg
aaccctactcaatattggaataaatattggctccatgttcagttaaccta
ctatcccccactttggggaaaaacaagtctaagctggagcacaagcatac
atttctgatactttaatgttttctttcatctcctatatccttaaagaacc
atcaggaattcatgaatctggaagacaactggcagattcttcctaggact
acaggcacttttaaaaggatgtcacagaatgatatgcaaacattggtatc
tcttgtctaaataaatgctggcacgcatagtttcccttacatattaggcc
aacaaaatggtgatgtaagtcgtttcaattttataaagtgctcagcagag
gtccatctgatcagagaaagataacaatagaggaagaacatttctcaaca
tgaaaagttgccactattgatctggcttccagtgtgaactcgctaataaa
aacatattcactattctaacagtcaccttggcaacctcactcttacatga
cagtagaaaatgggagaacactatatttgtctgtatctaatggcacaata
aaaggaaatataggttcaatgttcccaactattttataaatttagcaact
tatttttccaaaaccttgaaatcacaaagaaaaagtacagtagatagaag
aaaatgaccaccagtgtgtgagttttcagtgtatatgtttatgaaacaca
actctggatatctgatctagagatgagttgaggaaaatgtcatcattctg
gcatatggcaaaggtcttgagaaaggagcattacatggtgacattgccac
caaggccctttctgtttctgctgcacatgaatcagaagaattctattgag
tcatctatatgcagcaattttcaccgagtcattgagagaattaaaacacc
gcgcactttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_7407559_7408730
seq2: B6Ng01-344L15.b_52_1217

seq1  GAATTCCTTGACTGTAACTGTATAATCCACTGTGGGGTTGCTATCCAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGACTGTAACTGTATAATCCACTGTGGGGTTGCTATCCAGCT  50

seq1  TGGCAGCACATGTGCCATCCCATTGGCCAGGGGTTGCACAAAGATGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCACATGTGCCATCCCATTGGCCAGGGGTTGCACAAAGATGATTT  100

seq1  TAACATACTTAGTAGAAATAGAATAAAGCTCATGGAAATCTGTTTCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATACTTAGTAGAAATAGAATAAAGCTCATGGAAATCTGTTTCTAAA  150

seq1  TATTGAAACAAGAGGATCTTCCATGGAATAAGGAACCATGGAACAGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAACAAGAGGATCTTCCATGGAATAAGGAACCATGGAACAGTCAT  200

seq1  GTACAGGACACTAGCTCAAAGAATGTTTGTCTTGTGACTGTGCATTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGACACTAGCTCAAAGAATGTTTGTCTTGTGACTGTGCATTTATA  250

seq1  GTGATATGAACTGAAGTTACACCTGCAAATGGTTCTAACGTGTTTACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATGAACTGAAGTTACACCTGCAAATGGTTCTAACGTGTTTACCCA  300

seq1  TTAACTCTTACAACTGTCTTTTTGATATCTTGGCTTTATTTTGCTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTTACAACTGTCTTTTTGATATCTTGGCTTTATTTTGCTCCTTA  350

seq1  ATTCTTCAAAGTCACTGATATTTATTTGGCATTTGTAGCGTTTTGGGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAAAGTCACTGATATTTATTTGGCATTTGTAGCGTTTTGGGTGA  400

seq1  AAAGCTGCCCTCAGTGTGGAGTAAATAATACTGTTGAAGAAAGGCATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCCCTCAGTGTGGAGTAAATAATACTGTTGAAGAAAGGCATCAA  450

seq1  TGAAAACAACAGATTAAAGAAGAAAAGAAGGCAGCCATTTTTATGCAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAACAGATTAAAGAAGAAAAGAAGGCAGCCATTTTTATGCAAGT  500

seq1  TGAATGTAAATGAACTTGGTATTTTGTAGGCTAAGTGATTAATGGGATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTAAATGAACTTGGTATTTTGTAGGCTAAGTGATTAATGGGATGA  550

seq1  AATACTCTGGCTTTTGTAACAGATGGTTTCTAGAACATGAAGCTTTCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTCTGGCTTTTGTAACAGATGGTTTCTAGAACATGAAGCTTTCAGT  600

seq1  CACTGGTCTCTGTAATGTAAACATCATATTCCTGTAACTATAACTGTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTCTCTGTAATGTAAACATCATATTCCTGTAACTATAACTGTACT  650

seq1  TCGTGCTGGCCCATGACTGAGCTTTTCTTCTGGTGTGGCCAGAAAGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTGGCCCATGACTGAGCTTTTCTTCTGGTGTGGCCAGAAAGAGGA  700

seq1  GTGGTCAAGGGATGGGGAGGCACATTGGTTTCTCTTTAGGCTCAAGGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAAGGGATGGGGAGGCACATTGGTTTCTCTTTAGGCTCAAGGATT  750

seq1  TATAAGAGAGATAGATCATTGTTAATCAGAAGTTTTGAAGGTAGTTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAGAGATAGATCATTGTTAATCAGAAGTTTTGAAGGTAGTTAGAA  800

seq1  GAAAAGACAGAAAGACGAAATACACAGAGGGATGATAAATTTTGAAGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGACAGAAAGACGAAATACACAGAGGGATGATAAATTTTGAAGTGT  850

seq1  TCTGAATGATGGAAGCACTCTGCTGTGGCCAAAACAAGGCTATCAGAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGATGGAAGCACTCTGCTGTGGCCAAAACAAGGCTATCAGAAAT  900

seq1  GTTATGAGCACGAAAGAGTGAAGTACAAGAAGATAGGTGGGGCTTCTAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGAGCACGAAAGAGTGAAGTACAAGAAGATAGGTGGGGCTTCTAGG  950

seq1  CACATGGGTAGCTGTAAAAAGGCTCTACTATCAATGGAAAGCAATAGATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGGTAGCTGTAAAAAGGCTCTACTATCAATGGAAAGCAATAGATG  1000

seq1  ATATTTTATAAGTAATATGTCAAAATTATTTGCTTTCAAACAATACACTT  1050
      ||| ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATA-TTTAT-AGTAATATGTCAAAATTATTTGCTTTCAAACAATACACTT  1048

seq1  CCCACAATTATTTGTAAGAGGAGCTAGGTCCGAGAGGACACAGAAGAATG  1100
      ||||| |||||||||| || |||||||   ||||||||||||||||||||
seq2  CCCAC-ATTATTTGTAGGA-GAGCTAG--TCGAGAGGACACAGAAGAATG  1094

seq1  GGCCATTCAATCAGGAAGAATGCAGCATTCTG--AGAAAAGTGCTGAAGA  1148
      ||||||||||||||| ||||||||||||||||  |||||  |||||||||
seq2  GGCCATTCAATCAGG-AGAATGCAGCATTCTGGAAGAAAGTTGCTGAAGA  1143

seq1  CTCAGTATTTGTATAGATGGGTGG  1172
      |||||| | | || ||||||||||
seq2  CTCAGTTTGTTTA-AGATGGGTGG  1166


seq1: chr1_7567683_7568897
seq2: B6Ng01-344L15.g_66_1275 (reverse)

seq1  AAAAGTGC---GTGTTTTAA---TCTCATATGACTTCGGTGAAAATTGCT  44
      ||||||||   |||||||||   ||||| ||||| |||||||||||||||
seq2  AAAAGTGCGCGGTGTTTTAATTCTCTCA-ATGAC-TCGGTGAAAATTGCT  48

seq1  GCATAATGATGCACTTCAAATATGAAATTCTCTGGATCATGTGCAAGCAG  94
      |||||  |||| |||   |||| ||| |  ||||  |||||||| |||||
seq2  GCATATAGATG-ACT--CAATA-GAATTCTTCTGATTCATGTGC-AGCAG  93

seq1  -GACAGGAAGGG-CTTGGTGGCAATTGTCACCATGTAATGCTCCTTTCTC  142
        |||| ||||| ||||||||||| |||||||||||||||||||||||||
seq2  AAACAGAAAGGGCCTTGGTGGCAA-TGTCACCATGTAATGCTCCTTTCTC  142

seq1  -AGACCTTTGCCATATGCCAGAATTGATGACATTTTTCCTCAACTTCATC  191
       |||||||||||||||||||||| |||||||| ||||||||||| |||||
seq2  AAGACCTTTGCCATATGCCAGAA-TGATGACA-TTTTCCTCAAC-TCATC  189

seq1  TTCTAGATTCAGATATCCAGAGTTGTGTTTCATAAACATATACACTGAAA  241
       |||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTAGA-TCAGATATCCAGAGTTGTGTTTCATAAACATATACACTGAAA  237

seq1  ACTCACACACTGGTGGTCATTTTCTTCTATCTACTGTACTTTTTTCTTTG  291
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCACACACTGGTGGTCATTTTCTTCTATCTACTGTAC-TTTTTCTTTG  286

seq1  TGATTTCAAGGTTTTGGAAAAATAAGTTGCTAAATTTATAAAATAGTTGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCAAGGTTTTGGAAAAATAAGTTGCTAAATTTATAAAATAGTTGG  336

seq1  GAACATTGAACCTATATTTCCTTTTATTGTGCCATTAGATACAGACAAAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTGAACCTATATTTCCTTTTATTGTGCCATTAGATACAGACAAAT  386

seq1  ATAGTGTTCTCCCATTTTCTACTGTCATGTAAGAGTGAGGTTGCCAAGGT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGTTCTCCCATTTTCTACTGTCATGTAAGAGTGAGGTTGCCAAGGT  436

seq1  GACTGTTAGAATAGTGAATATGTTTTTATTAGCGAGTTCACACTGGAAGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTAGAATAGTGAATATGTTTTTATTAGCGAGTTCACACTGGAAGC  486

seq1  CAGATCAATAGTGGCAACTTTTCATGTTGAGAAATGTTCTTCCTCTATTG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAATAGTGGCAACTTTTCATGTTGAGAAATGTTCTTCCTCTATTG  536

seq1  TTATCTTTCTCTGATCAGATGGACCTCTGCTGAGCACTTTATAAAATTGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTCTCTGATCAGATGGACCTCTGCTGAGCACTTTATAAAATTGA  586

seq1  AACGACTTACATCACCATTTTGTTGGCCTAATATGTAAGGGAAACTATGC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACTTACATCACCATTTTGTTGGCCTAATATGTAAGGGAAACTATGC  636

seq1  GTGCCAGCATTTATTTAGACAAGAGATACCAATGTTTGCATATCATTCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGCATTTATTTAGACAAGAGATACCAATGTTTGCATATCATTCTG  686

seq1  TGACATCCTTTTAAAAGTGCCTGTAGTCCTAGGAAGAATCTGCCAGTTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTTTTAAAAGTGCCTGTAGTCCTAGGAAGAATCTGCCAGTTGT  736

seq1  CTTCCAGATTCATGAATTCCTGATGGTTCTTTAAGGATATAGGAGATGAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGATTCATGAATTCCTGATGGTTCTTTAAGGATATAGGAGATGAA  786

seq1  AGAAAACATTAAAGTATCAGAAATGTATGCTTGTGCTCCAGCTTAGACTT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACATTAAAGTATCAGAAATGTATGCTTGTGCTCCAGCTTAGACTT  836

seq1  GTTTTTCCCCAAAGTGGGGGATAGTAGGTTAACTGAACATGGAGCCAATA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCCCAAAGTGGGGGATAGTAGGTTAACTGAACATGGAGCCAATA  886

seq1  TTTATTCCAATATTGAGTAGGGTTCAATGTTATCATTTGTTTTATCCCAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCAATATTGAGTAGGGTTCAATGTTATCATTTGTTTTATCCCAT  936

seq1  AGAAAGCCATGAAATCAGTAACTAAGTTTCCTTCTAAGGACAGATTGACA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCCATGAAATCAGTAACTAAGTTTCCTTCTAAGGACAGATTGACA  986

seq1  GTCATGGACAGCTGCTCATTCATTTATTGATTAGCTACAAGCTAAGTGCC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGACAGCTGCTCATTCATTTATTGATTAGCTACAAGCTAAGTGCC  1036

seq1  TATTTGTCAAGTCCAGTGCTAGAAAACGGGAAATTGAAACTGCTTAAACT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCAAGTCCAGTGCTAGAAAACGGGAAATTGAAACTGCTTAAACT  1086

seq1  CAGCATGGTTTCTATTTTTATGGATCTATAGTCTCACTATGGAGAACAGG  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGGTTTCTATTTTTATGGATCTATAGTCTCACTATGGAGAACAGG  1136

seq1  TTTGGATTGAGTAGATGTAAACTGCCTCAGTGCAATGATTTAAAAGTCTG  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTGAGTAGATGTAAACTGCCTCAGTGCAATGATTTAAAAGTCTG  1186

seq1  TCTTAAGTACTTGACTTAGAATTC  1215
      ||||||||||||||||||||||||
seq2  TCTTAAGTACTTGACTTAGAATTC  1210


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