BAC Information

Click to search

BAC

Clone NameB6Ng01-344P03
Chromosome1 (Build37)
Map Location 139,525,566 - 139,526,408
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344P03.bB6Ng01-344P03.g
ACCGA127299GA127300
length1,1981,175
definitionB6Ng01-344P03.b B6Ng01-344P03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctactgtattgcttctgaccaaggtactcacttcacagtgaaa
cccaccggtcttaccatatccctcaccattctgaaacagctggcctgata
gaaagatagaatggcttttggaagacagttatgccacaagtgggtgcagc
aggatggaggaccagggctgagtacttcacaagatggtgtatgctttgaa
tcagcatcccaatatatggtttggtttctcctgtagccaggatacagaag
tccagcaattaaaggctagaaaagataatattttcatgcactatcacccc
tagtgagctactaggaaaatttttgcttcttattatttaaccttatgctc
tacttacttagaagttttggttcagaaggtacaaacccttctgtcaggag
cttcagcaagcattccattgaactggaagttcagattttccctggccagt
ttagacatctgatgctcttaaatcaacaagctaagaaggaataacagtgt
taggaggcatgcttgatctagattaccaagatgaaattgggttgcttctc
cacaagggaagccagaaagattatgtttggagtgcaggatatgctttcag
gacatcttttggtgctaccatgtcctttgagtaaagtcaatgggaaacta
cagcagcctaatacaggcaagttgacaaagggcacagacccatcagggtt
aaaggtttaagtcactcttccagaaaagagtccagacctgctaaggtgct
tgatgagggtagaagaaatataaaatgggtagtgaaggaaggtagttata
aataccttataaggtcacatgatgagttgcagaaatgattataattgaca
tgtgtctccctgcccaagcctcatgatgcttggcagacgaggcccaagat
gacccctaaccagtgccacacaacacaaggtggaacatagcactccagac
aaccaaaggcaccaggtgccactaagatgaacaagtatgtggtggagagt
tatcgatagtgtggcagaattcagaggtctcaaacagacctattactcat
tgcaatgaatgtcgcagtaagaaggtggacaaaccgatatattgtggacc
attgtcatggtgtttcaggcttccaatggaagtttcttctcttcacggac
agttgcaggctcacgcaggtacagtgtatggccaaaatttggctaatt
gaattctcacctgaggaataccgaatggcagagaagcacctgagaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggaaacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcataccctagcaagattttatcgaaa
ggacccagatgtagctatctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacagggctccca
atggaggagctagtgaaagtacccaaggagctaagggatctgcaacccta
taggtggaacaacattatgaactaaccagtacccggagctctgactctag
ctgcatatgtatccaaggatggcctagtcagccatcactggaagaagccc
attgacccgcaaccttggtatgccagtacgacgcagacattggatgtgtg
gattagggtaagtgtactccatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139525566_139526408
seq2: B6Ng01-344P03.b_418_1248

seq1  TGGTTCAGAAGGTACAAACCCTTCTGTCAGGAGCTTCAGCAAGCATTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGAAGGTACAAACCCTTCTGTCAGGAGCTTCAGCAAGCATTCCA  50

seq1  TTGAACTGGAAGTTCAGATTTTCCCTGGCCAGTTTAGACATCTGATGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGGAAGTTCAGATTTTCCCTGGCCAGTTTAGACATCTGATGCTC  100

seq1  TTAAATCAACAAGCTAAGAAGGAATAACAGTGTTAGGAGGCATGCTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAACAAGCTAAGAAGGAATAACAGTGTTAGGAGGCATGCTTGAT  150

seq1  CTAGATTACCAAGATGAAATTGGGTTGCTTCTCCACAAGGGAAGCCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATTACCAAGATGAAATTGGGTTGCTTCTCCACAAGGGAAGCCAGAA  200

seq1  AGATTATGTTTGGAGTGCAGGATATGCTTTCAGGACATCTTTTGGTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGTTTGGAGTGCAGGATATGCTTTCAGGACATCTTTTGGTGCTA  250

seq1  CCATGTCCTTTGAGTAAAGTCAATGGGAAACTACAGCAGCCTAATACAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCTTTGAGTAAAGTCAATGGGAAACTACAGCAGCCTAATACAGG  300

seq1  CAAGTTGACAAAGGGCACAGACCCATCAGGGTTAAAGGTTTAAGTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGACAAAGGGCACAGACCCATCAGGGTTAAAGGTTTAAGTCACTC  350

seq1  TTCCAGAAAAGAGTCCAGACCTGCTAAGGTGCTTGATGAGGGTAGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAAAAGAGTCCAGACCTGCTAAGGTGCTTGATGAGGGTAGAAGAA  400

seq1  ATATAAAATGGGTAGTGAAGGAAGGTAGTTATAAATACCTTATAAGGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAATGGGTAGTGAAGGAAGGTAGTTATAAATACCTTATAAGGTCA  450

seq1  CATGATGAGTTGCAGAAATGATTATAATTGACATGTGTCTCCCTGCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGAGTTGCAGAAATGATTATAATTGACATGTGTCTCCCTGCCCAA  500

seq1  GCCTCATGATGCTTGGCAGACGAGGCCCAAGATGACCCCTAACCAGTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCATGATGCTTGGCAGACGAGGCCCAAGATGACCCCTAACCAGTGCC  550

seq1  ACACAACAC-AGGTGGAACATAGCACTCCAGACAACCAAAGGCACCAGGT  599
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACACAAGGTGGAACATAGCACTCCAGACAACCAAAGGCACCAGGT  600

seq1  GCCACTAAGATGAACAAGTATGTGGTGGAGAG-TATCGATAGTGTGGCAG  648
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GCCACTAAGATGAACAAGTATGTGGTGGAGAGTTATCGATAGTGTGGCAG  650

seq1  AATCCAGAGGTCTCAAAACAGACCTATAACTCATTGCAATGAATGTTGGC  698
      ||| |||||||||| |||||||||||| |||||||||||||||||| |  
seq2  AATTCAGAGGTCTC-AAACAGACCTATTACTCATTGCAATGAATGTCG--  697

seq1  AAGTAAAGAAAGGTGGACAAAACGATATATTGTGGGACACATTGTCAT-G  747
       |||||   |||||||||||| ||||||||||| |||| ||||||||| |
seq2  CAGTAA--GAAGGTGGACAAACCGATATATTGT-GGAC-CATTGTCATGG  743

seq1  TGTTACA-GCTTCCACAATGGAAAGTTTCCTCTCCTTTACAGGGAAGTTT  796
      |||| || |||||  |||||| ||||||| ||||   | || |||   ||
seq2  TGTTTCAGGCTTC--CAATGG-AAGTTTCTTCTC---TTCACGGACAGTT  787

seq1  GAAAGGGTAGAGGGCAGGTACAATGTATGTGCAAAATTTTGCTAATT  843
      | | |   |    ||||||||| ||||||  |||||||| |||||||
seq2  GCAGGCTCA---CGCAGGTACAGTGTATGGCCAAAATTTGGCTAATT  831