BAC Information

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BAC

Clone NameB6Ng01-345H16
Chromosome1 (Build37)
Map Location 97,675,363 - 97,803,634
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345H16.bB6Ng01-345H16.g
ACCGA127659GA127660
length1,0391,092
definitionB6Ng01-345H16.b B6Ng01-345H16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,675,363 - 97,676,396)(97,802,526 - 97,803,634)
sequence
gaattcctccatagagattctgcattcagttaactctagtaagagtttga
tgttgatatagaattacaacaactaggtatgcactttcaggtgaaacaaa
ggtagttagcccatgttctttgcaggctgaatgctcattggaaggttcac
ctacatattccctaagaagatctttacaaatatacgaaaagtatgtctac
ctgggtttatcttaagctctacaatacttataagaacagttcatgtttaa
atcaagagagaatgctataggtaatggttaagggtaagggataatgtttt
tattttattattgacttaataaacaaagttctggtaaattatctcaacct
ttccttttataatttaaagatagtcatgggggataaaataacaataagga
catctatgaaagtcatgagaacccatactgttaagcatctacctaaaagt
acacttaagttcacgtataaatacacctagatagtttaaattaaaatttc
ccatttagacacacaatggtcccaccaaagaacatcttttaaaataaata
aataagtaagtaagtatgtaagtaagtaagtaaataaataaataaataaa
taaataaataaaaattaggtgtgagaagctctcttttgagttgttgatta
gaattttccaagaaactatcaaaatattacagcatatatctatttccatt
gggtgccctcaggaataggaggtaaccttttattgaggaagacaccattc
atttcaaacagggcctagaaactcctgaattgataagaaaaccatcttcc
tgtgttctcctggcaccaaatgacaccatgtagattgtctgttttcttag
ggcttctatggctatgaagagacaccatgaccacagtatttcttataagg
gaaaacatttaatgagggttgagtcacagtttcagaggtctagtattatt
cagcattatgggcagcattgcagcatgaaaggcagacatgatgctagaaa
aactgattgaagaggtgtacattcttgatttacaggcag

gaattctacagaaaaaaaaaatgtagcttaaaccacatgtttttccccta
atggtttaaaatctcctatcatttttctttcactgattctccattaattc
aattctgatcatttttgctttctactgcttttgtattttccttatgaact
ttattttattttcattctgtagtcttttaattcttaattatgaatgatga
agttatttacttttattctgatttttaatgtagtcacatatctctaagca
tctctacgtcttcaccagataaatgatcttttagcaaataatatttttat
ttactaagatttcttttctaagaaattttaactgtattccctttgtaact
tgctgtggcatatgattaacatatggaaacactcaccttaacaaaggaaa
tatttgtttatttattcagtggatacatactatgattgcttgaccctgtg
tatctgggcagagcttaacactagttggagtgtttgaaggaggatgcttt
ttatcccatagtaggtagggaacatagaaactattaaggaccaggtacaa
cattcgaatgtgtgtaccaagcgatctgctttcttatgctattccatccc
ttgaaagagctctatgacctggtgaccaatgcttcaactaccctcatcac
ctgtaggatacattcctatgaaaaacaattattcatggatgttcaatagc
agtggatatatgtattgagtgtttacttagctatcgattgtcattatgaa
ctgacaatgccgatatgacccaggaagatttttccttttcttattttcag
catgatttatttagtgctctagtgtttatgatctatttttttctgttctg
catatagttgcatatattctgtacttcttgcttattaataattaattact
ttagttagtattcaatttttgtgaagttaagtatttatttctctaaactt
ttattaaatttgtttcattgacaaattagtcatagacacgttacatttat
gctgccattctatctctctctctcaaaacattctatatccacttcacact
cctctatctctatgtctctgtttctctgtgatcagtaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_97675363_97676396
seq2: B6Ng01-345H16.b_46_1084

seq1  GAATTCCTCCATAGAGATTCTGCATTCAGTTAACTCTAGTAAGAGTTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCATAGAGATTCTGCATTCAGTTAACTCTAGTAAGAGTTTGA  50

seq1  TGTTGATATAGAATTACAACAACTAGGTATGCACTTTCAGGTGAAACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATATAGAATTACAACAACTAGGTATGCACTTTCAGGTGAAACAAA  100

seq1  GGTAGTTAGCCCATGTTCTTTGCAGGCTGAATGCTCATTGGAAGGTTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTAGCCCATGTTCTTTGCAGGCTGAATGCTCATTGGAAGGTTCAC  150

seq1  CTACATATTCCCTAAGAAGATCTTTACAAATATACGAAAAGTATGTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATTCCCTAAGAAGATCTTTACAAATATACGAAAAGTATGTCTAC  200

seq1  CTGGGTTTATCTTAAGCTCTACAATACTTATAAGAACAGTTCATGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTATCTTAAGCTCTACAATACTTATAAGAACAGTTCATGTTTAA  250

seq1  ATCAAGAGAGAATGCTATAGGTAATGGTTAAGGGTAAGGGATAATGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGAGAATGCTATAGGTAATGGTTAAGGGTAAGGGATAATGTTTT  300

seq1  TATTTTATTATTGACTTAATAAACAAAGTTCTGGTAAATTATCTCAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTATTGACTTAATAAACAAAGTTCTGGTAAATTATCTCAACCT  350

seq1  TTCCTTTTATAATTTAAAGATAGTCATGGGGGATAAAATAACAATAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTATAATTTAAAGATAGTCATGGGGGATAAAATAACAATAAGGA  400

seq1  CATCTATGAAAGTCATGAGAACCCATACTGTTAAGCATCTACCTAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATGAAAGTCATGAGAACCCATACTGTTAAGCATCTACCTAAAAGT  450

seq1  ACACTTAAGTTCACGTATAAATACACCTAGATAGTTTAAATTAAAATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAGTTCACGTATAAATACACCTAGATAGTTTAAATTAAAATTTC  500

seq1  CCATTTAGACACACAATGGTCCCACCAAAGAACATCTTTTAAAATAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAGACACACAATGGTCCCACCAAAGAACATCTTTTAAAATAAATA  550

seq1  AATAAGTAAGTAAGTATGTAAGTAAGTAAGTAAATAAATAAATAAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAAGTAAGTATGTAAGTAAGTAAGTAAATAAATAAATAAATAAA  600

seq1  TAAATAAATAAAAATTAGGTGTGAGAAGCTCTCTTTTGAGTTGTTGATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAAAATTAGGTGTGAGAAGCTCTCTTTTGAGTTGTTGATTA  650

seq1  GAATTTTCCAAGAAACTATCAAAATATTACAGCATATATCTATTTCCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCCAAGAAACTATCAAAATATTACAGCATATATCTATTTCCATT  700

seq1  GGGTGCCCTCAGGAATAGGAGGTAACCTTTTATTGAGGAAGACACCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCCTCAGGAATAGGAGGTAACCTTTTATTGAGGAAGACACCATTC  750

seq1  ATTTCAAACAGGGCCTAGAAACTCCTGAATTGATAAGAAAACCATCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAACAGGGCCTAGAAACTCCTGAATTGATAAGAAAACCATCTTCC  800

seq1  TGTGTTCTCCTGGCACCAAATGACACCATGTAGATTGTCTGTTTTCTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCCTGGCACCAAATGACACCATGTAGATTGTCTGTTTTCTTAG  850

seq1  GGCTTCTATGGCTATGAAGAGACACCATGACCACAGTATTTCTTATAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTATGGCTATGAAGAGACACCATGACCACAGTATTTCTTATAAGG  900

seq1  GAAAACATTTAATGAGGGTTGAGTCACAGTTTCAGAGGTCTAGTATTA-T  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAAACATTTAATGAGGGTTGAGTCACAGTTTCAGAGGTCTAGTATTATT  950

seq1  CAGCATTATGGGCAGCATTGCAGCATG-AAGGCAGACATGATGCTAG-AA  997
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  CAGCATTATGGGCAGCATTGCAGCATGAAAGGCAGACATGATGCTAGAAA  1000

seq1  AACTGATTG-AGAGGTGTACA-TCTTGATTTACAGGCAG  1034
      ||||||||| ||||||||||| |||||||||||||||||
seq2  AACTGATTGAAGAGGTGTACATTCTTGATTTACAGGCAG  1039


seq1: chr1_97802526_97803634
seq2: B6Ng01-345H16.g_65_1156 (reverse)

seq1  ATATTTACTGGATCACAGAGGAAAACAAGGAGACATAGAGATAGGAGGAG  50
      ||||||||| ||||||||||  |||||  |||||||||||||| ||||||
seq2  ATATTTACT-GATCACAGAG--AAACA--GAGACATAGAGATA-GAGGAG  44

seq1  TTGTGAAGTTGGATAATAGGAATGGTTTTGAGAGAGGAGAAGATAAGAAT  100
       ||||||| ||||| ||| |||| ||||||||||| ||| |||| |||||
seq2  -TGTGAAG-TGGAT-ATA-GAAT-GTTTTGAGAGA-GAG-AGAT-AGAAT  86

seq1  GGCAGCAATTAAAATGTAACGTGTCTATGACTAAATTTGTCAATG-AACA  149
      |||||||    ||||||||||||||||||||| |||||||||||| ||||
seq2  GGCAGCA---TAAATGTAACGTGTCTATGACT-AATTTGTCAATGAAACA  132

seq1  AATTTAATAAAAGTTTAGAGAAATAAATACTTAACTTCACAAAAATTGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATAAAAGTTTAGAGAAATAAATACTTAACTTCACAAAAATTGAA  182

seq1  TACTAACTAAAGTAATTAATTATTAATAAGCAAGAAGTACAGAATATATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACTAAAGTAATTAATTATTAATAAGCAAGAAGTACAGAATATATG  232

seq1  CAACTATATGCAGAACAGAAAAAAATAGATCATAAACACTAGAGCACTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATATGCAGAACAGAAAAAAATAGATCATAAACACTAGAGCACTAA  282

seq1  ATAAATCATGCTGAAAATAAGAAAAGGAAAAATCTTCCTGGGTCATATCG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCATGCTGAAAATAAGAAAAGGAAAAATCTTCCTGGGTCATATCG  332

seq1  GCATTGTCAGTTCATAATGACAATCGATAGCTAAGTAAACACTCAATACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGTCAGTTCATAATGACAATCGATAGCTAAGTAAACACTCAATACA  382

seq1  TATATCCACTGCTATTGAACATCCATGAATAATTGTTTTTCATAGGAATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCACTGCTATTGAACATCCATGAATAATTGTTTTTCATAGGAATG  432

seq1  TATCCTACAGGTGATGAGGGTAGTTGAAGCATTGGTCACCAGGTCATAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTACAGGTGATGAGGGTAGTTGAAGCATTGGTCACCAGGTCATAGA  482

seq1  GCTCTTTCAAGGGATGGAATAGCATAAGAAAGCAGATCGCTTGGTACACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTCAAGGGATGGAATAGCATAAGAAAGCAGATCGCTTGGTACACA  532

seq1  CATTCGAATGTTGTACCTGGTCCTTAATAGTTTCTATGTTCCCTACCTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGAATGTTGTACCTGGTCCTTAATAGTTTCTATGTTCCCTACCTAC  582

seq1  TATGGGATAAAAAGCATCCTCCTTCAAACACTCCAACTAGTGTTAAGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGATAAAAAGCATCCTCCTTCAAACACTCCAACTAGTGTTAAGCTC  632

seq1  TGCCCAGATACACAGGGTCAAGCAATCATAGTATGTATCCACTGAATAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGATACACAGGGTCAAGCAATCATAGTATGTATCCACTGAATAAA  682

seq1  TAAACAAATATTTCCTTTGTTAAGGTGAGTGTTTCCATATGTTAATCATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAATATTTCCTTTGTTAAGGTGAGTGTTTCCATATGTTAATCATA  732

seq1  TGCCACAGCAAGTTACAAAGGGAATACAGTTAAAATTTCTTAGAAAAGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGCAAGTTACAAAGGGAATACAGTTAAAATTTCTTAGAAAAGAA  782

seq1  ATCTTAGTAAATAAAAATATTATTTGCTAAAAGATCATTTATCTGGTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTAAATAAAAATATTATTTGCTAAAAGATCATTTATCTGGTGAA  832

seq1  GACGTAGAGATGCTTAGAGATATGTGACTACATTAAAAATCAGAATAAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGAGATGCTTAGAGATATGTGACTACATTAAAAATCAGAATAAAA  882

seq1  GTAAATAACTTCATCATTCATAATTAAGAATTAAAAGACTACAGAATGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAACTTCATCATTCATAATTAAGAATTAAAAGACTACAGAATGAA  932

seq1  AATAAAATAAAGTTCATAAGGAAAATACAAAAGCAGTAGAAAGCAAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAAAGTTCATAAGGAAAATACAAAAGCAGTAGAAAGCAAAAAT  982

seq1  GATCAGAATTGAATTAATGGAGAATCAGTGAAAGAAAAATGATAGGAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAATTGAATTAATGGAGAATCAGTGAAAGAAAAATGATAGGAGAT  1032

seq1  TTTAAACCATTAGGGGAAAAACATGTGGTTTAAGCTACATTTTTTTTTTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACCATTAGGGGAAAAACATGTGGTTTAAGCTACATTTTTTTTTTC  1082

seq1  TGTAGAATTC  1109
      ||||||||||
seq2  TGTAGAATTC  1092


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