BAC Information

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BAC

Clone NameB6Ng01-345L12
Chromosome1 (Build37)
Map Location 80,907,512 - 81,039,650
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433326, LOC665064, LOC100039325, A830043J08Rik, 2310015K22Rik, Cul3, EG620899, 1700016L21Rik, Dock10, LOC665092
Downstream gene9430031J16Rik, EG621020, LOC433328, EG665145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345L12.bB6Ng01-345L12.g
ACCGA127825GA127826
length9521,098
definitionB6Ng01-345L12.b B6Ng01-345L12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,907,512 - 80,908,452)(81,038,540 - 81,039,650)
sequence
gaattcacttttagctgaaatattctgagaaaacatacttgtaaaactcc
aatgaagctataagatgacatgcaggcaacagaaacagagtattcataga
gaacataaggctcaaaactgtagcagcattggaaaatagacaaagttaaa
atacagttcaggaccacagttggaaagtaccaagagaacataaatgctgg
ttgtgttcacaacattgagcagtcagagaaatgtccaacagcaagtccgt
aatttgtatgtaaacagatattgagagatattactgagcactgagctgtc
actaagtactgatagtatgggctctgggtcacaagctctgtgcatgtcca
ttaagagaatttgtgctgctcatcaaagagaataaatgaatagaaaaaaa
aacctttgaagattttaaggttaaattgaacggttctttctgtttcttac
aataaacagcaatcagaaatagttctaaattacagcccagactaatttag
gatacacttaaatggttatcaggagggaaggccctgagggaggtagagta
ctaaattagagggtgggtggtggggttcatggaaggtactggtaagtcag
acagattttcattattatagagtattggacaagtttcttacagacccaac
ttatcttgcagaacggagtttcagagttaggatataagcaactctacttc
aggtttaatgtgggaaactggagcttcaactcttagactgggagaatgaa
ctgctttatagagcacaccatgactggggatttgtggctgtgttaagggc
cagtggacccagcatggcaatgacccccatgatgtacccattctaagaga
ccagtggataagcgtgcactgtaagctttcttgtaagcagaaacatgtcg
gtcatgagttcctccagaaatcttgctccattttctgtatacttgctcta
at

gaattcctgtgctcaaagccgttgtagtaactcttggctaggaatgtaaa
ggagtgatgtgatgggattttataaaaaaccccttattttattaataaag
gtttatttcttttgaattcatgctgtagtacttgttaatagtatttctga
aaaatatccattataaatatattattataccattaggaaataaagaaaac
cattaattgaaaaacaagcttctgaaagaaagtggatgattaaagcataa
aatatttaaaacgtaaaatataaggaccaaatattcttaagcagttgaaa
gtctgtgtgtttctgttaggctaaatgatgtattagcaggcatacaaaca
gctacttttgtctcaggaaagggaaaatgacgagttataaattcttaggc
tagctacactataaaccctgtctatgtagtaacaccctaccctgcccccc
catgggcaactgtgtcctcaacactctgccctgctactacaattgcatct
cagtctatttgccacttttactaaaacatccatttagaatgtttggcctc
cagcatgttgcctggcacagtatcactgcagatgccacctcttcaaggag
gccacccaaaatgtgtaggaatctcttcattctttaattctgttttgccc
ttaaaccaggagcatcttgtattgtagtcctaagcactaacttgtgaaca
tagaactctatgtatataaataagaaaaacatgaggagagggggcaatat
tttctcttttaaatatttaaatgtttttgttactttcatagaaatacaca
ttttgttcatatctgccaaagaccatgtttgatattagaagataaactga
gacaggctctacagggaattaatattgagagcagctgatggcataggtcc
agatactgacaggggctgctgaaaatggtagccagcaattagagaagtta
ctgagcagacttttatatgagggactaagcttaatttactggggctgtgc
tcctgtgtcaatgaaaatctgaatctttactccctgggggcagcaagaag
agagaagagaaatttacactccctacacaaaacacctccacaacattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_80907512_80908452
seq2: B6Ng01-345L12.b_49_1000

seq1  GAATTCACTTTTAGCTGAAATATTCTGAGAAAACATACTTGTAAAACTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTAGCTGAAATATTCTGAGAAAACATACTTGTAAAACTCC  50

seq1  AATGAAGCTATAAGATGACATGCAGGCAACAGAAACAGAGTATTCATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCTATAAGATGACATGCAGGCAACAGAAACAGAGTATTCATAGA  100

seq1  GAACATAAGGCTCAAAACTGTAGCAGCATTGGAAAATAGACAAAGTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAGGCTCAAAACTGTAGCAGCATTGGAAAATAGACAAAGTTAAA  150

seq1  ATACAGTTCAGGACCACAGTTGGAAAGTACCAAGAGAACATAAATGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCAGGACCACAGTTGGAAAGTACCAAGAGAACATAAATGCTGG  200

seq1  TTGTGTTCACAACATTGAGCAGTCAGAGAAATGTCCAACAGCAAGTCCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTCACAACATTGAGCAGTCAGAGAAATGTCCAACAGCAAGTCCGT  250

seq1  AATTTGTATGTAAACAGATATTGAGAGATATTACTGAGCACTGAGCTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATGTAAACAGATATTGAGAGATATTACTGAGCACTGAGCTGTC  300

seq1  ACTAAGTACTGATAGTATGGGCTCTGGGTCACAAGCTCTGTGCATGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTACTGATAGTATGGGCTCTGGGTCACAAGCTCTGTGCATGTCCA  350

seq1  TTAAGAGAATTTGTGCTGCTCATCAAAGAGAATAAATGAATAGAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAATTTGTGCTGCTCATCAAAGAGAATAAATGAATAGAAAAAAA  400

seq1  AACCTTTGAAGATTTTAAGGTTAAATTGAACGGTTCTTTCTGTTTCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGAAGATTTTAAGGTTAAATTGAACGGTTCTTTCTGTTTCTTAC  450

seq1  AATAAACAGCAATCAGAAATAGTTCTAAATTACAGCCCAGACTAATTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAGCAATCAGAAATAGTTCTAAATTACAGCCCAGACTAATTTAG  500

seq1  GATACACTTAAATGGTTATCAGGAGGGAAGGCCCTGAGGGAGGTAGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACTTAAATGGTTATCAGGAGGGAAGGCCCTGAGGGAGGTAGAGTA  550

seq1  CTAAATTAGAGGGTGGGTGGTGGGGTTCATGGAAGGTACTGGTAAGTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTAGAGGGTGGGTGGTGGGGTTCATGGAAGGTACTGGTAAGTCAG  600

seq1  ACAGATTTTCATTATTATAGAGTATTGGACAAGTTTCTTACAGACCCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTTCATTATTATAGAGTATTGGACAAGTTTCTTACAGACCCAAC  650

seq1  TTATCTTGCAGAACGGAG-TTCAGAGTTAGGATATAAGCAACTCTACTTC  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTATCTTGCAGAACGGAGTTTCAGAGTTAGGATATAAGCAACTCTACTTC  700

seq1  AGG-TTAATGTGGG-AACTGGAGCTTCAACTCTTAGACT-GGAGAATGAA  746
      ||| |||||||||| |||||||||||||||||||||||| ||||||||||
seq2  AGGTTTAATGTGGGAAACTGGAGCTTCAACTCTTAGACTGGGAGAATGAA  750

seq1  CTGCTTTATAGAGCACACCATGACT-GGGATTTGTGGCTGTGTTAA-GGC  794
      ||||||||||||||||||||||||| |||||||||||||||||||| |||
seq2  CTGCTTTATAGAGCACACCATGACTGGGGATTTGTGGCTGTGTTAAGGGC  800

seq1  CAGT-GACCCAGCATGGCAATGA-CCCCATGATGTA-CCATTCTAAGAGA  841
      |||| |||||||||||||||||| |||||||||||| |||||||||||||
seq2  CAGTGGACCCAGCATGGCAATGACCCCCATGATGTACCCATTCTAAGAGA  850

seq1  CCAGTTGATAAGCGTGCACTGTAAGCATCCCTGTAAGCAGAACATTGTCG  891
      ||||| |||||||||||||||||||| | | |||||||||||   |||||
seq2  CCAGTGGATAAGCGTGCACTGTAAGCTTTCTTGTAAGCAGAAACATGTCG  900

seq1  GTCATGAG-TCCTCCAG-AATCCTGCTCCATTTTCTGTATACTTGCTCTA  939
      |||||||| |||||||| |||| |||||||||||||||||||||||||||
seq2  GTCATGAGTTCCTCCAGAAATCTTGCTCCATTTTCTGTATACTTGCTCTA  950

seq1  CT  941
       |
seq2  AT  952


seq1: chr1_81038540_81039650
seq2: B6Ng01-345L12.g_68_1165 (reverse)

seq1  GAATGTGTGTGGGGGTG-TGTGTGTGGGGAGGTGTAAATTTTCTCTTTCC  49
      |||||| ||||| |||| | ||||| |||| |||||||||   |||   |
seq2  GAATGT-TGTGGAGGTGTTTTGTGTAGGGA-GTGTAAATT---TCT---C  42

seq1  TTCTCT-TTCTTGCTGGCCCCAGGGAGTTAAAGATTCAGAATTTTTCATT  98
      |||||| ||||||||| |||||||||| ||||||||||||  ||||||||
seq2  TTCTCTCTTCTTGCTGCCCCCAGGGAG-TAAAGATTCAGA--TTTTCATT  89

seq1  GGCCACAGGGAGCACCAGCCCCAGTAAATTAAGCTTAGTTCCCTCATATA  148
       | |||| |||||| ||||||||||||||||||||||| |||||||||||
seq2  -GACACA-GGAGCA-CAGCCCCAGTAAATTAAGCTTAG-TCCCTCATATA  135

seq1  AAAGTCTGCTCAGTAACTTCTCTAATTGCTGGCTACCATTTTCAGCAGCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTGCTCAGTAACTTCTCTAATTGCTGGCTACCATTTTCAGCAGCC  185

seq1  CCTGTCAGTATCTGGACCTATGCCATCAGCTGCTCTCAATATTAATTCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGTATCTGGACCTATGCCATCAGCTGCTCTCAATATTAATTCCC  235

seq1  TGTAGAGCCTGTCTCAGTTTATCTTCTAATATCAAACATGGTCTTTGGCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGCCTGTCTCAGTTTATCTTCTAATATCAAACATGGTCTTTGGCA  285

seq1  GATATGAACAAAATGTGTATTTCTATGAAAGTAACAAAAACATTTAAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAACAAAATGTGTATTTCTATGAAAGTAACAAAAACATTTAAATA  335

seq1  TTTAAAAGAGAAAATATTGCCCCCTCTCCTCATGTTTTTCTTATTTATAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGAGAAAATATTGCCCCCTCTCCTCATGTTTTTCTTATTTATAT  385

seq1  ACATAGAGTTCTATGTTCACAAGTTAGTGCTTAGGACTACAATACAAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTTCTATGTTCACAAGTTAGTGCTTAGGACTACAATACAAGAT  435

seq1  GCTCCTGGTTTAAGGGCAAAACAGAATTAAAGAATGAAGAGATTCCTACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGTTTAAGGGCAAAACAGAATTAAAGAATGAAGAGATTCCTACA  485

seq1  CATTTTGGGTGGCCTCCTTGAAGAGGTGGCATCTGCAGTGATACTGTGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGGTGGCCTCCTTGAAGAGGTGGCATCTGCAGTGATACTGTGCC  535

seq1  AGGCAACATGCTGGAGGCCAAACATTCTAAATGGATGTTTTAGTAAAAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACATGCTGGAGGCCAAACATTCTAAATGGATGTTTTAGTAAAAGT  585

seq1  GGCAAATAGACTGAGATGCAATTGTAGTAGCAGGGCAGAGTGTTGAGGAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATAGACTGAGATGCAATTGTAGTAGCAGGGCAGAGTGTTGAGGAC  635

seq1  ACAGTTGCCCATGGGGGGGCAGGGTAGGGTGTTACTACATAGACAGGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGCCCATGGGGGGGCAGGGTAGGGTGTTACTACATAGACAGGGTT  685

seq1  TATAGTGTAGCTAGCCTAAGAATTTATAACTCGTCATTTTCCCTTTCCTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTAGCTAGCCTAAGAATTTATAACTCGTCATTTTCCCTTTCCTG  735

seq1  AGACAAAAGTAGCTGTTTGTATGCCTGCTAATACATCATTTAGCCTAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGTAGCTGTTTGTATGCCTGCTAATACATCATTTAGCCTAACA  785

seq1  GAAACACACAGACTTTCAACTGCTTAAGAATATTTGGTCCTTATATTTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACACAGACTTTCAACTGCTTAAGAATATTTGGTCCTTATATTTTA  835

seq1  CGTTTTAAATATTTTATGCTTTAATCATCCACTTTCTTTCAGAAGCTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTAAATATTTTATGCTTTAATCATCCACTTTCTTTCAGAAGCTTGT  885

seq1  TTTTCAATTAATGGTTTTCTTTATTTCCTAATGGTATAATAATATATTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTAATGGTTTTCTTTATTTCCTAATGGTATAATAATATATTTA  935

seq1  TAATGGATATTTTTCAGAAATACTATTAACAAGTACTACAGCATGAATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGATATTTTTCAGAAATACTATTAACAAGTACTACAGCATGAATTC  985

seq1  AAAAGAAATAAACCTTTATTAATAAAATAAGGGGTTTTTTATAAAATCCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATAAACCTTTATTAATAAAATAAGGGGTTTTTTATAAAATCCC  1035

seq1  ATCACATCACTCCTTTACATTCCTAGCCAAGAGTTACTACAACGGCTTTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCACTCCTTTACATTCCTAGCCAAGAGTTACTACAACGGCTTTG  1085

seq1  AGCACAGGAATTC  1111
      |||||||||||||
seq2  AGCACAGGAATTC  1098


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