BAC Information

Click to search

BAC

Clone NameB6Ng01-346G05
Chromosome16 (Build37)1 (Build37)
Map Location 52,514,863 - 52,515,375116,624,111 - 116,625,337
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCblb, Alcam
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346G05.bB6Ng01-346G05.g
ACCGA128300GA128301
length9601,216
definitionB6Ng01-346G05.b B6Ng01-346G05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,514,863 - 52,515,375)(116,624,111 - 116,625,337)
sequence
gaattctttggagcaggagttaaaagaacttgtgactcaccaaaagtgaa
gcctgggaattgaaattattttttatatggagagttatattctcttaatc
aatctctccaatcctttcaaccagttgattttaattgtgcagcaatttct
ttactcgattctttcaattctttttagatgttatttttaaaccatgtaaa
tatgtggacaaacagtaaatttcacaatataaatgtcctcatctttgatt
tgctttggactttgatttggtacttgtgttcatctccttcctcggctggt
ttcaaatttgtaaataaaagcatgagtgctgaacgcgctatggcatgctt
gtaatcacagcactagctaggcaaagacatagaggtaccagggatttaat
agccaatctgtaagctacacatttaggaggaaacctttttttcttttttt
ttttctttttttttttccattttttattaggtatttagctcatttacatt
tccaatgctataccaaaagtcccccttacccacccacccccactccccta
cccaccaactccccccctttggccctggcgttcccctgtaccggggcaca
caaagtctgcgtgtccaatgggcctctctttccagtgatggccgactagg
ccatcttttgatacatatgcagctagagtcaagagctcaggggtactggt
tagttcataattgttgttccacctatagggttgaagatccctttagctcc
ttgggtactttcttctagctcctccattgggagcccttgtgatccatcca
ttagctgactgtgagcatccacttctgtgtttgctaggccccggtcagag
tctcacaagagacagctacatctgggtcctttcagtaaaatctttgctag
tgtatgcaatggtgtcagcatttgggaagctgattatggggttgatccct
ggatattggc
gaattctctaagagaaaaacatcacaggtggcaaaaataaaattatattc
gtagatctactgaagaaagaaatgctattcaaggaatgaagaaaattgcc
ttttcccaactggaagtcattttttaaataggagcatgaaatggagacca
tatgcattacatttcatttcatttcaatttatttatttatttatttattt
atttatttatttatgttgaagcatgattgttttttatttccatgtttagt
tcagatcttctcagtgtaggctgaggcctggatgtaagctatacagtgat
aaagtagagacaacaatctacaggttaatagagatgttggaaaagataca
tttggcatggttaagtttctttccttgttttttacattttcttagggata
ttcaagcaagtgggtttattcacctcaaattacactactaacagacaaac
tgaatgttttcaccaactctagatttagctatctagtgagtttattatgg
ttatatacataagcgtggatgactcaaaggcaggcaaatcaccacaaatc
tgataaaagcataattaatgaataatgaaagctgcataagctatgtgcta
tcagaaccacttcaaagatgatggactggtcagagtcttttctctctagc
aatatatttcttcttttataatcgtgaagagggattgtaaaatcttgtaa
attttataaattttttctgagacttgtgagttgtgtttacctcatgaatc
ttggcataatcttttctcatcatctttttggaataattcagcttaaaata
aataactacataatatgcttataaaaaagttattgcaacatgtgttctca
gtttatatgtagagtgttcatcaataaaatggtcacaaattattaaaaat
acatgatgtagtcatctgccaatattcattgtggcttgattcctggattc
ccttgtgttatttaaattttcagataccagtatctttatatgcaaatgaa
gtagactgtcatagatcctatacacattatttctcatattttttgtgaga
atatttttataaggtctggcataagtctagtctgcttcaactcattatat
aactgagaacatgtttagctttcatgaatctctactaattctcttcatgg
taaattacaaatatgcttactacggttccaatggcttggcttacagttgt
gatcatatataaaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52514863_52515375
seq2: B6Ng01-346G05.b_485_1003

seq1  TTTTTTTTTTTTCTTTTTTTTTTTTTTTTCCATTTTTTATTAGGTATTTA  50
      ||||| |||||| |||| ||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTTTTTTTTCTTTTTTTTTTTCCATTTTTTATTAGGTATTTA  50

seq1  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCAC  100

seq1  CCCCACTCCCCTACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCCACTCCCCTACCCACCAACTCCCCCCCTTTGGCCCTGGCGTTCCCCT  150

seq1  GTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCGGGGCACACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTG  200

seq1  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  250

seq1  CAGGGGTACTGGTTAGTTCATAA-TGTTGTTCCACCTATAGGGTTGAAGA  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAGGGGTACTGGTTAGTTCATAATTGTTGTTCCACCTATAGGGTTGAAGA  300

seq1  TCCCTTTAGCTCCTTGGGTACTTTC-TCTAGCTCCTCCATTGGGAGCCC-  347
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  TCCCTTTAGCTCCTTGGGTACTTTCTTCTAGCTCCTCCATTGGGAGCCCT  350

seq1  TGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG  400

seq1  GCCCCGG-CATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATA  446
      ||||||| || |||||||||||||||||||||||||||||||||||  ||
seq2  GCCCCGGTCAGAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCAGTA  450

seq1  AAATC-TTGCTAGTATATGCAATGGTGTCAGCGTTT-GGATGCTGATTAT  494
      ||||| |||||||| ||||||||||||||||| ||| ||| |||||||||
seq2  AAATCTTTGCTAGTGTATGCAATGGTGTCAGCATTTGGGAAGCTGATTAT  500

seq1  GGGGTGGATCCCTGGATAT  513
      ||||| |||||||||||||
seq2  GGGGTTGATCCCTGGATAT  519

seq1: chr1_116624111_116625337
seq2: B6Ng01-346G05.g_67_1282

seq1  GAATTCTCTAAGAGAAAAACATCACAGGTGGCAAAAATAAAATTATATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAGAGAAAAACATCACAGGTGGCAAAAATAAAATTATATTC  50

seq1  GTAGATCTACTGAAGAAAGAAATGCTATTCAAGGAATGAAGAAAATTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATCTACTGAAGAAAGAAATGCTATTCAAGGAATGAAGAAAATTGCC  100

seq1  TTTTCCCAACTGGAAGTCATTTTTTAAATAGGAGCATGAAATGGAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAACTGGAAGTCATTTTTTAAATAGGAGCATGAAATGGAGACCA  150

seq1  TATGCATTACATTTCATTTCATTTCAATTTATTTATTTATTTATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATTACATTTCATTTCATTTCAATTTATTTATTTATTTATTTATTT  200

seq1  ATTTATTTATTTATGTTGAAGCATGATTGTTTTTTATTTCCATGTTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATGTTGAAGCATGATTGTTTTTTATTTCCATGTTTAGT  250

seq1  TCAGATCTTCTCAGTGTAGGCTGAGGCCTGGATGTAAGCTATACAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTTCTCAGTGTAGGCTGAGGCCTGGATGTAAGCTATACAGTGAT  300

seq1  AAAGTAGAGACAACAATCTACAGGTTAATAGAGATGTTGGAAAAGATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAGACAACAATCTACAGGTTAATAGAGATGTTGGAAAAGATACA  350

seq1  TTTGGCATGGTTAAGTTTCTTTCCTTGTTTTTTACATTTTCTTAGGGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATGGTTAAGTTTCTTTCCTTGTTTTTTACATTTTCTTAGGGATA  400

seq1  TTCAAGCAAGTGGGTTTATTCACCTCAAATTACACTACTAACAGACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCAAGTGGGTTTATTCACCTCAAATTACACTACTAACAGACAAAC  450

seq1  TGAATGTTTTCACCAACTCTAGATTTAGCTATCTAGTGAGTTTATTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTTTTCACCAACTCTAGATTTAGCTATCTAGTGAGTTTATTATGG  500

seq1  TTATATACATAAGCGTGGATGACTCAAAGGCAGGCAAATCACCACAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACATAAGCGTGGATGACTCAAAGGCAGGCAAATCACCACAAATC  550

seq1  TGATAAAAGCATAATTAATGAATAATGAAAGCTGCATAAGCTATGTGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGCATAATTAATGAATAATGAAAGCTGCATAAGCTATGTGCTA  600

seq1  TCAGAACCACTTCAAAGATGATGGACTGGTCAGAGTCTTTTCTCTCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACCACTTCAAAGATGATGGACTGGTCAGAGTCTTTTCTCTCTAGC  650

seq1  AATATATTTCTTCTTTTATAATCGTGAAGAGGGATTGTAAAATCTTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTCTTCTTTTATAATCGTGAAGAGGGATTGTAAAATCTTGTAA  700

seq1  ATTTTATAAATTTTTTCTGAGACTTGTGAGTTGTGTTTACCTCATGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATAAATTTTTTCTGAGACTTGTGAGTTGTGTTTACCTCATGAATC  750

seq1  TTGGCATAATCTTTTCTCATCATCTTTTTGGAATAATTCAGCTTAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATAATCTTTTCTCATCATCTTTTTGGAATAATTCAGCTTAAAATA  800

seq1  AATAACTACATAATATGCTTATAAAAAAGTTATTGCAACATGTGTTCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTACATAATATGCTTATAAAAAAGTTATTGCAACATGTGTTCTCA  850

seq1  GTTTATATGTAGAGTGTTCATCAATAAAATGGTCACAAATTATTAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATGTAGAGTGTTCATCAATAAAATGGTCACAAATTATTAAAAAT  900

seq1  ACATGATGTAGTCATCTGCCAATATTCATTGTGGCTTGATTCCTGGATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGTAGTCATCTGCCAATATTCATTGTGGCTTGATTCCTGGATTC  950

seq1  CCTTGTTGTTATTTAAATTTTCAGATACCAGTATCTTTATATGCAAATTG  1000
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTTG-TGTTATTTAAATTTTCAGATACCAGTATCTTTATATGCAAA-TG  998

seq1  AAGTAGACTGTCATAGATCCTATACACATTATTTCTCATA-TGTTTGTGA  1049
      |||||||||||||||||||||||||||||||||||||||| | |||||||
seq2  AAGTAGACTGTCATAGATCCTATACACATTATTTCTCATATTTTTTGTGA  1048

seq1  G-ATA-TTTTATAAGGTCTGGCAT-AGTCTAGTCTGGCCTCAAACTCATT  1096
      | ||| |||||||||||||||||| |||||||||||  ||  ||||||||
seq2  GAATATTTTTATAAGGTCTGGCATAAGTCTAGTCTG--CTTCAACTCATT  1096

seq1  ATATAACTGAAGACATGTTTTAGCTTTCAATGATTCTCCTACCTATATCT  1146
      ||||||||||  ||||| |||||||||| |||| ||| ||| |||  |||
seq2  ATATAACTGAGAACATG-TTTAGCTTTC-ATGAATCT-CTA-CTAATTCT  1142

seq1  CTTCAGTGTTAAAATTACAAATATGCTTTACTACCGTGTTTTCAATATGC  1196
      |||||  ||  ||||||||||||||| |||||||   | || ||||  ||
seq2  CTTCATGGT--AAATTACAAATATGC-TTACTAC---GGTTCCAAT-GGC  1185

seq1  TTGGCTTACAAAGTTGTGATC--ATATAAACCC  1227
      |||||||||  ||||||||||  ||||||||||
seq2  TTGGCTTAC--AGTTGTGATCATATATAAACCC  1216