BAC Information

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BAC

Clone NameB6Ng01-346J12
Chromosome1 (Build37)4 (Build37)
Map Location 172,554,707 - 172,555,33350,156,994 - 50,158,154
singlet/doubletsingletsinglet
Overlap geneLOC640532
Upstream geneRgs5, Rgs4, LOC100039960, 1700084C01Rik, Hsd17b7, Ddr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002
Downstream geneOlfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b, Fcgr4, Fcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346J12.bB6Ng01-346J12.g
ACCGA128447GA128448
length6661,153
definitionB6Ng01-346J12.b B6Ng01-346J12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(172,554,707 - 172,555,333)(50,156,994 - 50,158,154)
sequence
gaattctgcattaagaccatctggccctggactctttctttgttcttggg
attttttttttttaatcagtaagtatattttaaaaatttgaaaataccaa
aaactcttggaagttaaacattaagaaaatgctaattttaagcacagaga
aaaattatcaataatatttccatgatgtttgtagaccaggattttaatat
tttcaactgttaatattcaacaagcagaataattattttaagctatattt
cattgttacacctcccttttcatttctgattttattaattggaatactat
ttctgtgccctcttgttagtctggctaagggtttatctatcttgttgatt
ttctgaaagaaccaacttctggtttcattgattctttgaatagttctttt
tgtttctacttggttgatttcagccctaagtttgattatttcctgccatc
tactcctcttgggtggatttgctttcttttgttctagagcttctaggtgt
gctgttaggctgctagtgtatgctctctccagtatgagttttccttttag
gactgctttcattgtatcccataagtttgggtatattgtggcttcatttt
ctttaaactctaaaaagtctttaatttctttctttattccttccttgacc
aagttaccattgagta
gaattcagcttaggatggctcttttataatgatgtatggatgctaacttg
gaggattgatttgtgtaacaagaagtagaaatgtttacatgagctgagct
ttgaaagagacattgggatatgatttaaaccacacagtccatgttttaaa
tggcagcatgatgccccttaccctcttgtaggtcatgtgtacctaggagg
gtaaatgctttttctccattactagttatttagtataggcaggtctttgt
tagcttagcagcagtataatctttgtgctgagatccactaaggtctgggt
ttttaaatcctccttcctaagtccatattaactggctacttctgagtttc
tctgtactgagctgtgactggccagcttgtatgtatcatctaccttaagt
tacatgctgtagattgcaaatatcgaggtatgacttggggtggcattcct
ttcgcttctaggctgttgcccttactagtcatagatcgaggtttggcttc
ctccaaatggaatctgaccatgagctttttacccaagagtgcaaaaatgc
tgatggaaaaagtcagagttattgacaaacgcaattaaaaatgcaattaa
ttctcatttttaagctagatattgcatctgaccttaactgtcttcctggc
tatgacttagaagtcactgtttctgacttttccctcccttagttattgtt
gggggacacagcataatattcagtcagtcagtcagtcacacatttattca
attacctccatgttataacaacaaggttaataagcccctgggagataatt
atcacagtcaacatgttatagtcataacatgggacttacaaaatcaagtc
acttggcttcttttaacacccaagaaatagtacaaatcttatttcatgtc
accagaattattgataatgcattgaaactgagttaagtacctaatccaga
ttaagtgtttaataaaatatacatttttgtatgtgtatgtgtgtgtgtgt
gtgtgtgtgtgtgaagtgatatcagtatattttttgatctccccttgcta
aacatttatgcaaggtctgctgaacctaggatacatagattagccaggtc
atgctctgtggcccatagtactctcttttaaagccctgagaatgaccatg
ctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_172554707_172555333
seq2: B6Ng01-346J12.b_102_708

seq1  -TTTTATCAGTAAGTATATTTT-AAAATTTCAAAATAGCAAAAACTCTTT  48
       ||| ||||||||||||||||| ||||||| |||||| ||||||||||| 
seq2  TTTTAATCAGTAAGTATATTTTAAAAATTTGAAAATACCAAAAACTCTTG  50

seq1  GAAGTTAAACATTAAGAAAATGCTAATTTCAAGCACAGTGACAAAAATTA  98
      ||||||||||||||||||||||||||||| |||||||  || ||||||||
seq2  GAAGTTAAACATTAAGAAAATGCTAATTTTAAGCACA--GAGAAAAATTA  98

seq1  TCAATAATATTTCCATGATGTTTGTAGAACATGATTTCAATATTTTCAAC  148
      |||||||||||||||||||||||||||| || ||||| ||||||||||||
seq2  TCAATAATATTTCCATGATGTTTGTAGACCAGGATTTTAATATTTTCAAC  148

seq1  TGTTAATATTCAACAAACAGAATAATTATTTTAACATATATTT-------  191
      |||||||||||||||| |||||||||||||||||  |||||||       
seq2  TGTTAATATTCAACAAGCAGAATAATTATTTTAAGCTATATTTCATTGTT  198

seq1  -------CTTTTTCATTTCTGATTTTATTAATTTGATTTAATTAATTTTC  234
             | |||||||||||||||||||||||| || |  | ||  ||||
seq2  ACACCTCCCTTTTCATTTCTGATTTTATTAATTGGAAT--ACTA--TTTC  244

seq1  TGTCTCTGAGCCCTCTGGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTG  284
      |||      ||||||| |||||||||||||||||||||||||||||||||
seq2  TGT------GCCCTCTTGTTAGTCTGGCTAAGGGTTTATCTATCTTGTTG  288

seq1  ATTTTCTCAAAGAACCAGCTCCTGGTTTTATAGATTCTTTGTATAGTTCT  334
      ||||||| ||||||||| || ||||||| || ||||||||| ||||||||
seq2  ATTTTCTGAAAGAACCAACTTCTGGTTTCATTGATTCTTTGAATAGTTCT  338

seq1  TTTTGTTTCTACTTGGTTGATTTCAGCCCTGAGTTTGATTATTTCCTGCC  384
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTGTTTCTACTTGGTTGATTTCAGCCCTAAGTTTGATTATTTCCTGCC  388

seq1  TTCTACTCTTCTTGGGTGTATTTGCTTCTTTTTGTTCTAGAGCTTTCAGA  434
       ||||||| ||||||||| ||||||||  ||||||||||||||||  || 
seq2  ATCTACTCCTCTTGGGTGGATTTGCTTTCTTTTGTTCTAGAGCTTCTAGG  438

seq1  TGTGCTGTCAAGCTGCTAGTGTATGCTCTCTCCAGTTTCTTTTTGGAGGC  484
      |||||||| | ||||||||||||||||||||||||               
seq2  TGTGCTGTTAGGCTGCTAGTGTATGCTCTCTCCAG---------------  473

seq1  ACTCAGAGCTATGAGTTTTCCTCTTACCACTGCTTTCATTGTGTCCCATA  534
               ||||||||||||| |||  |||||||||||||| |||||||
seq2  ---------TATGAGTTTTCCTTTTAGGACTGCTTTCATTGTATCCCATA  514

seq1  AGTTTTGGTATGATGTATCTTCGTTTTCATTAAATTCTAAAAAGCCTTTA  584
      ||||| |||||  |||  |||| ||||| ||||| ||||||||| |||||
seq2  AGTTTGGGTATATTGTGGCTTCATTTTCTTTAAACTCTAAAAAGTCTTTA  564

seq1  ATTTATTTCTTTATTTCTTCCTTGACCAAGTTGTCATTGAGTA  627
      |||| |||||||||| ||||||||||||||||  |||||||||
seq2  ATTTCTTTCTTTATTCCTTCCTTGACCAAGTTACCATTGAGTA  607

seq1: chr4_50156994_50158154
seq2: B6Ng01-346J12.g_67_1219

seq1  GAATTCAGCTTAGGATGGCTCTTTTATAATGATGTATGGATGCTAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTAGGATGGCTCTTTTATAATGATGTATGGATGCTAACTTG  50

seq1  GAGGATTGATTTGTGTAACAAGAAGTAGAAATGTTTACATGAGCTGAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTGATTTGTGTAACAAGAAGTAGAAATGTTTACATGAGCTGAGCT  100

seq1  TTGAAAGAGACATTGGGATATGATTTAAACCACACAGTCCATGTTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGAGACATTGGGATATGATTTAAACCACACAGTCCATGTTTTAAA  150

seq1  TGGCAGCATGATGCCCCTTACCCTCTTGTAGGTCATGTGTACCTAGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCATGATGCCCCTTACCCTCTTGTAGGTCATGTGTACCTAGGAGG  200

seq1  GTAAATGCTTTTTCTCCATTACTAGTTATTTAGTATAGGCAGGTCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGCTTTTTCTCCATTACTAGTTATTTAGTATAGGCAGGTCTTTGT  250

seq1  TAGCTTAGCAGCAGTATAATCTTTGTGCTGAGATCCACTAAGGTCTGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGCAGCAGTATAATCTTTGTGCTGAGATCCACTAAGGTCTGGGT  300

seq1  TTTTAAATCCTCCTTCCTAAGTCCATATTAACTGGCTACTTCTGAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATCCTCCTTCCTAAGTCCATATTAACTGGCTACTTCTGAGTTTC  350

seq1  TCTGTACTGAGCTGTGACTGGCCAGCTTGTATGTATCATCTACCTTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACTGAGCTGTGACTGGCCAGCTTGTATGTATCATCTACCTTAAGT  400

seq1  TACATGCTGTAGATTGCAAATATCGAGGTATGACTTGGGGTGGCATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCTGTAGATTGCAAATATCGAGGTATGACTTGGGGTGGCATTCCT  450

seq1  TTCGCTTCTAGGCTGTTGCCCTTACTAGTCATAGATCGAGGTTTGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCTTCTAGGCTGTTGCCCTTACTAGTCATAGATCGAGGTTTGGCTTC  500

seq1  CTCCAAATGGAATCTGACCATGAGCTTTTTACCCAAGAGTGCAAAAATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATGGAATCTGACCATGAGCTTTTTACCCAAGAGTGCAAAAATGC  550

seq1  TGATGGAAAAAGTCAGAGTTATTGACAAACGCAATTAAAAATGCAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAAAAGTCAGAGTTATTGACAAACGCAATTAAAAATGCAATTAA  600

seq1  TTCTCATTTTTAAGCTAGATATTGCATCTGACCTTAACTGTCTTCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTTTAAGCTAGATATTGCATCTGACCTTAACTGTCTTCCTGGC  650

seq1  TATGACTTAGAAGTCACTGTTTCTGACTTTTCCCTCCCTTAGTTATTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTAGAAGTCACTGTTTCTGACTTTTCCCTCCCTTAGTTATTGTT  700

seq1  GGGGGACACAGCATAATATTCAGTCAGTCAGTCAGTCACACATTTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACACAGCATAATATTCAGTCAGTCAGTCAGTCACACATTTATTCA  750

seq1  ATTACCTCCATGTTATAACAACAAGGTTAATAAGCCCCTGGGAGATAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTCCATGTTATAACAACAAGGTTAATAAGCCCCTGGGAGATAATT  800

seq1  ATCACAGTCAACATGTTATAGTCATAACATGGGACTTACAAAAATCAAGT  850
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATCACAGTCAACATGTTATAGTCATAACATGGGACTTAC-AAAATCAAGT  849

seq1  CACTTGGCTTCTTTTAACACCCAAGAAATAGTACAAATCTTATTTCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGCTTCTTTTAACACCCAAGAAATAGTACAAATCTTATTTCATGT  899

seq1  CACCAGAATTATTGATAATGCATTGAAACTGAGTTAAGTACCTAATCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAATTATTGATAATGCATTGAAACTGAGTTAAGTACCTAATCCAG  949

seq1  ATTAAGTGTTTAATAAAATATTACATTTTTGTATGTGTATGTTGTGTGTG  1000
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  ATTAAGTGTTTAATAAAATA-TACATTTTTGTATGTGTATG-TGTGTGTG  997

seq1  TGTGTGTGTGTGTGTGAAGTTGATATCAGGTATATTTTTTTGATCTCTCT  1050
      ||||||||||||||||||| |||||||| ||||| |||||||||||| | 
seq2  TGTGTGTGTGTGTGTGAAG-TGATATCA-GTATA-TTTTTTGATCTC-CC  1043

seq1  CTTGCTTATACATTTAGGCAAGGTCTGCTGAACCTAGAATACATAGATTT  1100
      ||||| || ||||||| |||||||||||||||||||| ||||||||| ||
seq2  CTTGC-TAAACATTTATGCAAGGTCTGCTGAACCTAGGATACATAGA-TT  1091

seq1  AGCCAGTCTTTGCTCCTGTGGCCCCTTGT-CTCTCTTTCTAAAGCCCTGA  1149
      ||||||    |||| ||||||||| | || |||||||| |||||||||||
seq2  AGCCAGGTCATGCT-CTGTGGCCCATAGTACTCTCTTT-TAAAGCCCTGA  1139

seq1  G-ATGACCA-GCTG  1161
      | ||||||| ||||
seq2  GAATGACCATGCTG  1153