BAC Information

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BAC

Clone NameB6Ng01-346L01
Chromosome1 (Build37)
Map Location 18,405,165 - 18,406,357
singlet/doubletsinglet
Overlap genenone
Upstream genePpia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17
Downstream geneLOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346L01.bB6Ng01-346L01.g
ACCGA128516GA128517
length1,2141,177
definitionB6Ng01-346L01.b B6Ng01-346L01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttcttaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtccctggttttatgtgaagttctttga
tccatttagatttgaccttagtgcaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccatta
ttacaatattgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagacttgaagtttttatcata
cagatctttcacttccttagttagagtcacgccgagatattttatattat
tgtgactattgagaaggtgttgtttccctaatttctttctcagcctgttt
attctttgtgtagaagaaaggccatgacttgttgagtatttttattatcc
agctacctcacgaagcttgtttatcaggttaggaagttctctggtggatt
taagggtccacttattattactatccattcatctgcgaaaagtgaaattt
gaactctctccattgtaccttggattctcccttttgtgtgtgctcggcaa
tgtcgagtctctag
gaattctctcaaaatcttggctattattactgtcttccttagtgtgtgaa
tttaaatctgttaaccatagttcccaggtgtgaaaggctaaagctgaaac
ctgtaacatcgaatatgcattatttagcttcgaatctttggaaaaaccta
ataaggaaaatctgcattaaactaacacaaaagaaacctagagacaggtg
ccttacttaacggaggattcaattcctaatatttgttatttaaatacaaa
acttttctatattcaagtgtgattgaatttagaatgactttaaatctaca
catttgtcaggaccatacagactgtatgtagtgaaagatgtctgcattta
agcaaactttaatttagttattattaaataatgacaattgaacaagtgat
cctccctttagggggtactataacttctaccaactaaagagtagtaagct
tcacaataattaaaaagactgtgcttatgttaattgtagtgcttgtcaac
aaatgtggtcattctgttaaaaaaaaaaccaacctattacagtaacagtg
ggaatattttgtacacatgtcaatgaacttcctcggagaaggactcttga
atgctggaggaggtactaggtcaatggcaatccatttctttttctttctt
ttttttattttttattttttacttttaggtttgtaaaccttaggtgccag
ccagcaaacatgctacagacaaagcacttgtgggtgtactatgagaacat
gaaaaaaaaatatttgagaacacttcctattacctgtgttgctgtgtatt
gagggtgtggattggagacaggcatacatgtgcttatgttcatgttttac
tataggtgtatggcatgcctgtcatcctttctcaagagcaattgttatgc
ttttcagcagtgttcagctcacaggccagcgttgcttacaagaatgcagc
atctttctttaagccagccagacatgcacttcttggatgtcctccttctc
atatcatctgcctgggtttgactgttccctgcctcctgcctctctaaagt
cagcctggggtctccactccactactattgggtgcacaagcagccctctc
actgtctgcaagtgcagaggatccgtccacccttatgccgtcttccaaca
tccctccctttccctctattaccttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18405165_18406357
seq2: B6Ng01-346L01.g_65_1241

seq1  GAATTCTCTCAAAATCTTGGCTATTATTACTGTCTTCCTTAGTGTGTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAAATCTTGGCTATTATTACTGTCTTCCTTAGTGTGTGAA  50

seq1  TTTAAATCTGTTAACCATAGTTCCCAGGTGTGAAAGGCTAAAGCTGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCTGTTAACCATAGTTCCCAGGTGTGAAAGGCTAAAGCTGAAAC  100

seq1  CTGTAACATCGAATATGCATTATTTAGCTTCGAATCTTTGGAAAAACCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACATCGAATATGCATTATTTAGCTTCGAATCTTTGGAAAAACCTA  150

seq1  ATAAGGAAAATCTGCATTAAACTAACACAAAAGAAACCTAGAGACAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAAATCTGCATTAAACTAACACAAAAGAAACCTAGAGACAGGTG  200

seq1  CCTTACTTAACGGAGGATTCAATTCCTAATATTTGTTATTTAAATACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTAACGGAGGATTCAATTCCTAATATTTGTTATTTAAATACAAA  250

seq1  ACTTTTCTATATTCAAGTGTGATTGAATTTAGAATGACTTTAAATCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTATATTCAAGTGTGATTGAATTTAGAATGACTTTAAATCTACA  300

seq1  CATTTGTCAGGACCATACAGACTGTATGTAGTGAAAGATGTCTGCATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCAGGACCATACAGACTGTATGTAGTGAAAGATGTCTGCATTTA  350

seq1  AGCAAACTTTAATTTAGTTATTATTAAATAATGACAATTGAACAAGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTTTAATTTAGTTATTATTAAATAATGACAATTGAACAAGTGAT  400

seq1  CCTCCCTTTAGGGGGTACTATAACTTCTACCAACTAAAGAGTAGTAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTTAGGGGGTACTATAACTTCTACCAACTAAAGAGTAGTAAGCT  450

seq1  TCACAATAATTAAAAAGACTGTGCTTATGTTAATTGTAGTGCTTGTCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAATTAAAAAGACTGTGCTTATGTTAATTGTAGTGCTTGTCAAC  500

seq1  AAATGTGGTCATTCTGTTAAAAAAAAAACCAACCTATTACAGTAACAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGTCATTCTGTTAAAAAAAAAACCAACCTATTACAGTAACAGTG  550

seq1  GGAATATTTTGTACACATGTCAATGAACTTCCTCGGAGAAGGACTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATTTTGTACACATGTCAATGAACTTCCTCGGAGAAGGACTCTTGA  600

seq1  ATGCTGGAGGAGGTACTAGGTCAATGGCAATCCATTTCTTTTTCTTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGAGGAGGTACTAGGTCAATGGCAATCCATTTCTTTTTCTTTCTT  650

seq1  TTTTTTATTTTTTATTTTTTACTTTTAGGTTTGTAAACCTTAGGTGCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTTATTTTTTACTTTTAGGTTTGTAAACCTTAGGTGCCAG  700

seq1  CCAGCAAACATGCTACAGACAAAGCACTTGTGGGTGTACTATGAGAACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAAACATGCTACAGACAAAGCACTTGTGGGTGTACTATGAGAACAT  750

seq1  GAAAAAAAAATATTTGAGAACACTTCCTATTACCTGTGTTGCTGTGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATATTTGAGAACACTTCCTATTACCTGTGTTGCTGTGTATT  800

seq1  GAGGGTGTGGATTGGAGACAGGCATACATGTGCTTATGTTCATGTTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTGGATTGGAGACAGGCATACATGTGCTTATGTTCATGTTTTAC  850

seq1  TATAGGTGTATGGCATGCCTGTCATCCTTTCTCAAGAGCAATTGTTATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGTATGGCATGCCTGTCATCCTTTCTCAAGAGCAATTGTTATGC  900

seq1  TTTTCAGCAGTGTTCAGCTCACAGGCCAGCGTTGCTTACAAAGAATGCAG  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTCAGCAGTGTTCAGCTCACAGGCCAGCGTTGCTTAC-AAGAATGCAG  949

seq1  CATCTTTCTTTAAGCCAGCCAGACAATGCACTTCTTGGATGT-CTCCTTC  999
      |||||||||||||||||||||||| ||||||||||||||||| |||||||
seq2  CATCTTTCTTTAAGCCAGCCAGAC-ATGCACTTCTTGGATGTCCTCCTTC  998

seq1  TCATTATCATTCTGCCTGGGTTTTGACTGTTTCCCTGCCTCCTTGCCTCT  1049
      ||| ||||| |||||||||| |||||||| |||||||||||| |||||||
seq2  TCA-TATCA-TCTGCCTGGG-TTTGACTG-TTCCCTGCCTCC-TGCCTCT  1043

seq1  CTAAAGGTCAGCCTGGGGTCTTCACTCCACTACTAATGGGTGCACAAGCA  1099
      ||||| ||||||||||||||| ||||||||||||| ||||||||||||||
seq2  CTAAA-GTCAGCCTGGGGTCTCCACTCCACTACTATTGGGTGCACAAGCA  1092

seq1  GCCCTCTCACTGTTCCTGCAGTGGCAGAGGAATTCTGTCCACCCCTTTAT  1149
      |||||||||||||  |||||   ||||||||  || ||||||||  ||||
seq2  GCCCTCTCACTGT--CTGCAAGTGCAGAGGA--TCCGTCCACCC--TTAT  1136

seq1  GCCGTTCTTTCCCCAACAT-CCTCCCTTCCTCTATACTTCCTTCC  1193
      |||| ||||   ||||||| |||||||| | || || | ||||||
seq2  GCCG-TCTT---CCAACATCCCTCCCTTTCCCTCTATTACCTTCC  1177