BAC Information

Click to search

BAC

Clone NameB6Ng01-346M02
Chromosome1 (Build37)
Map Location 162,999,306 - 163,111,745
singlet/doubletdoublet
Overlap geneDars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200
Upstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5
Downstream geneEG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346M02.bB6Ng01-346M02.g
ACCGA128564GA128565
length1,1911,156
definitionB6Ng01-346M02.b B6Ng01-346M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,110,539 - 163,111,745)(162,999,306 - 163,000,490)
sequence
gaattcagtaataattaaaacactaaaagataaaacatgaggtccggtaa
agggggtgaaaattacaccctgcataggcaaagtaccattgaaatgctac
aattcaattgattttaattcaagatgctagaaagaacagttaaaccaaaa
aatggggggaaacgttctctgaaaacagaaataaaatagtgcaacaagtg
taattaaggaaaaagcgaaaaggtaattaacaaccatcccgtcaacgaaa
agaagacacagtcaagatgaaactgggttaggaccagaacccagacccaa
gtgtttcccgaccctctgcaaactctgcctcggtggctcacaggcaaaac
tgagatgccatttacttggatcttaaacttgacggtgcctcagcaaacat
tagtcccatccctgccctgccccaccctgcaactcttttaaattagtagt
tctacagagcagaaatggttggctgttttaaaatgttttcttacctgcca
gaacacgttcttgactatataaaagtccacatccaaagcagccataaata
caattaaaggtaaaaaataacaatacagtgaaaagcttggtgtttttaga
agagggtagacaatttggtgcacctaaagtaacaaatgcaaggaaaaatt
agtctgttgttgcggtggttttgaagcgtgggccccgccctgaaaaggtt
tgtttgagggcttggttccagcaggtggcgctgttgagagatgcttggat
catgagaatgcaaatactgtccttgggcttttccggtatgggtgctgaat
ggaaaggtcattacggtggcattctagtgcgtatcttgtcctgacccatt
tctttctaactctctctgtcatgaggtgagcagccttgctctgccccatc
ctccgccatggtgatgatgctccatctgcccacaaaccacagccgtggag
ctgaccaaccaaggactgaaagtatgaaacccggagcccaaatacatctt
ccctccttttgagacttttcctttagtttataggtaccatgttatgctgc
atctgtacatatgcactacatgccttcagtacccaggagcaggaaaagtg
tcagaatccccccttcgaactgatacgatgttgagagtcaccaatgtggt
ctgaactgaactagaccctcttgcagaacagcaagtgctct
gaattctttaagaagagaaggaaaaagcactttaaaaggcatcagtaaga
atgtttgtagttttctttaaaaatactctccattcatgatgtatcagctc
tttcaggtcaatgggtgaagttgtaaaaattttaaattagatgtgtgtgt
gtgtgtttatgtgtgcgtacccacaggtatgtgggctcacatgccacggt
gcccctgtggaagtcagaggacaacttgttggattctgttctcttcttcc
attcacagtgtgagttttgggagtcaactctggtactcaggcttggcagg
aagtgcctgaagccactgagccatcttgtaggtctgatgtagtttataaa
atagcctagattatacaatatccctattgtgtttacctgcacaagtgtca
aggcccaagcaaataactgccccaaaggaaaattttgccttctgtttaaa
aatctaaaccttgtacataaactagcacttgaagggacataaaatggtag
ctgtccattttggtaagtgacatataattttagaaattacctgcttgaca
gtgcagttagtatttaactttagtacaagtatagtttataacaatcattt
gtaaatcaataaactattagaaaagattttatttaaattattactttagt
ttttctactaatagtatacactacacaggctatctacttttttttttata
atcaagggggggaccttaattataactaatcaagagaatgaatgacctgg
tattaaaatgcagttagaatcagggaaacaagctgtcaaaaacaggcgga
agctcgtagctgccttcacctggaattctttgtgaactcaacgccagatt
tctggaaagagaaccccagattggccgcatggtcttcccgatgggtctgg
ataaacccctgcatagacgacttaaccaaaaaccaagatacatgttgaag
tcccgggatccggagagacatcacgaatcccacgctgcagtgtgtgtgct
caaactcggtttcggatactggaaccttaaattctagtccacgcaatgca
tcagaccctgctccgctgacgtctagattctacaagtagattgactgcca
gtctcagagaacttagtgagtggtagggcagctgcttcttcagtcactca
gttccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_163110539_163111745
seq2: B6Ng01-346M02.b_49_1239 (reverse)

seq1  AGAGCACTTGCTGTTCTTGCAGAGGGTCTAGGTTCAGTTCCCAGCACCAA  50
      |||||||||||||||||   |||||||||| ||||||||  ||| |||| 
seq2  AGAGCACTTGCTGTTCTGCAAGAGGGTCTA-GTTCAGTT--CAG-ACCAC  46

seq1  CATGGTGACTCTCAACCCTTTGTAATTCCAGTTCG-AGGGGGGA-TCTGA  98
        |||||||||||||  | | |||    ||||||| |||||||| |||||
seq2  ATTGGTGACTCTCAA--CATCGTA---TCAGTTCGAAGGGGGGATTCTGA  91

seq1  CACTTTTCCCTGGCCTCCTGGGGTACTGAAGGCATGTAGTGCATATGTAC  148
      ||||||| ||||  ||||| ||||||||||||||||||||||||||||||
seq2  CACTTTT-CCTG--CTCCT-GGGTACTGAAGGCATGTAGTGCATATGTAC  137

seq1  AGATGCAGCCATAACATTGGTACCTATAAAACTAAAGGAAAAGTTCTTCA  198
      |||||||| ||||||| |||||||||| ||||||||||||||||   |||
seq2  AGATGCAG-CATAACA-TGGTACCTAT-AAACTAAAGGAAAAGT--CTCA  182

seq1  AAAGGAGGGAAGATGTATTTGGGCTCCGGGTTTCATACTTTTCAGTCCTT  248
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGGAGGGAAGATGTATTTGGGCTCCGGGTTTCATAC-TTTCAGTCCTT  231

seq1  GGTTGGTCAGCTCCACGGCTGTGGTTTGTGGGCAGATGGAGCATCATCAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTCAGCTCCACGGCTGTGGTTTGTGGGCAGATGGAGCATCATCAC  281

seq1  CATGGCGGAGGATGGGGCAGAGCAAGGCTGCTCACCTCATGACAGAGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCGGAGGATGGGGCAGAGCAAGGCTGCTCACCTCATGACAGAGAGA  331

seq1  GTTAGAAAGAAATGGGTCAGGACAAGATACGCACTAGAATGCCACCGTAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAAAGAAATGGGTCAGGACAAGATACGCACTAGAATGCCACCGTAA  381

seq1  TGACC-TTCCATTCAGCACCCATACCGGAAAAGCCCAAGGACAGTATTTG  447
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTCCATTCAGCACCCATACCGGAAAAGCCCAAGGACAGTATTTG  431

seq1  CATTCTCATGATCCAAGCATCTCTCAACAGCGCCACCTGCTGGAACCAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCATGATCCAAGCATCTCTCAACAGCGCCACCTGCTGGAACCAAG  481

seq1  CCCTCAAACAAACCTTTTCAGGGCGGGGCCCACGCTTCAAAACCACCGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAACAAACCTTTTCAGGGCGGGGCCCACGCTTCAAAACCACCGCA  531

seq1  ACAACAGACTAATTTTTCCTTGCATTTGTTACTTTAGGTGCACCAAATTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGACTAATTTTTCCTTGCATTTGTTACTTTAGGTGCACCAAATTG  581

seq1  TCTACCCTCTTCTAAAAACACCAAGCTTTTCACTGTATTGTTATTTTTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTCTTCTAAAAACACCAAGCTTTTCACTGTATTGTTATTTTTTA  631

seq1  CCTTTAATTGTATTTATGGCTGCTTTGGATGTGGACTTTTATATAGTCAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAATTGTATTTATGGCTGCTTTGGATGTGGACTTTTATATAGTCAA  681

seq1  GAACGTGTTCTGGCAGGTAAGAAAACATTTTAAAACAGCCAACCATTTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGTGTTCTGGCAGGTAAGAAAACATTTTAAAACAGCCAACCATTTCT  731

seq1  GCTCTGTAGAACTACTAATTTAAAAGAGTTGCAGGGTGGGGCAGGGCAGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTAGAACTACTAATTTAAAAGAGTTGCAGGGTGGGGCAGGGCAGG  781

seq1  GATGGGACTAATGTTTGCTGAGGCACCGTCAAGTTTAAGATCCAAGTAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACTAATGTTTGCTGAGGCACCGTCAAGTTTAAGATCCAAGTAAA  831

seq1  TGGCATCTCAGTTTTGCCTGTGAGCCACCGAGGCAGAGTTTGCAGAGGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTCAGTTTTGCCTGTGAGCCACCGAGGCAGAGTTTGCAGAGGGT  881

seq1  CGGGAAACACTTGGGTCTGGGTTCTGGTCCTAACCCAGTTTCATCTTGAC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAACACTTGGGTCTGGGTTCTGGTCCTAACCCAGTTTCATCTTGAC  931

seq1  TGTGTCTTCTTTTCGTTGACGGGATGGTTGTTAATTACCTTTTCGCTTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTCTTTTCGTTGACGGGATGGTTGTTAATTACCTTTTCGCTTTT  981

seq1  TCCTTAATTACACTTGTTGCACTATTTTATTTCTGTTTTCAGAGAACGTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATTACACTTGTTGCACTATTTTATTTCTGTTTTCAGAGAACGTT  1031

seq1  TCCCCCCATTTTTTGGTTTAACTGTTCTTTCTAGCATCTTGAATTAAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCATTTTTTGGTTTAACTGTTCTTTCTAGCATCTTGAATTAAAAT  1081

seq1  CAATTGAATTGTAGCATTTCAATGGTACTTTGCCTATGCAGGGTGTAATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGAATTGTAGCATTTCAATGGTACTTTGCCTATGCAGGGTGTAATT  1131

seq1  TTCACCCCCTTTACCGGACCTCATGTTTTATCTTTTAGTGTTTTAATTAT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCCCCTTTACCGGACCTCATGTTTTATCTTTTAGTGTTTTAATTAT  1181

seq1  TACTGAATTC  1207
      ||||||||||
seq2  TACTGAATTC  1191

seq1: chr1_162999306_163000490
seq2: B6Ng01-346M02.g_70_1225

seq1  GAATTCTTTAAGAAGAGAAGGAAAAAGCACTTTAAAAGGCATCAGTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGAAGAGAAGGAAAAAGCACTTTAAAAGGCATCAGTAAGA  50

seq1  ATGTTTGTAGTTTTCTTTAAAAATACTCTCCATTCATGATGTATCAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTAGTTTTCTTTAAAAATACTCTCCATTCATGATGTATCAGCTC  100

seq1  TTTCAGGTCAATGGGTGAAGTTGTAAAAATTTTAAATTAGATGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGTCAATGGGTGAAGTTGTAAAAATTTTAAATTAGATGTGTGTGT  150

seq1  GTGTGTTTATGTGTGCGTACCCACAGGTATGTGGGCTCACATGCCACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTATGTGTGCGTACCCACAGGTATGTGGGCTCACATGCCACGGT  200

seq1  GCCCCTGTGGAAGTCAGAGGACAACTTGTTGGATTCTGTTCTCTTCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGTGGAAGTCAGAGGACAACTTGTTGGATTCTGTTCTCTTCTTCC  250

seq1  ATTCACAGTGTGAGTTTTGGGAGTCAACTCTGGTACTCAGGCTTGGCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAGTGTGAGTTTTGGGAGTCAACTCTGGTACTCAGGCTTGGCAGG  300

seq1  AAGTGCCTGAAGCCACTGAGCCATCTTGTAGGTCTGATGTAGTTTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTGAAGCCACTGAGCCATCTTGTAGGTCTGATGTAGTTTATAAA  350

seq1  ATAGCCTAGATTATACAATATCCCTATTGTGTTTACCTGCACAAGTGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCTAGATTATACAATATCCCTATTGTGTTTACCTGCACAAGTGTCA  400

seq1  AGGCCCAAGCAAATAACTGCCCCAAAGGAAAATTTTGCCTTCTGTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAAGCAAATAACTGCCCCAAAGGAAAATTTTGCCTTCTGTTTAAA  450

seq1  AATCTAAACCTTGTACATAAACTAGCACTTGAAGGGACATAAAATGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAACCTTGTACATAAACTAGCACTTGAAGGGACATAAAATGGTAG  500

seq1  CTGTCCATTTTGGTAAGTGACATATAATTTTAGAAATTACCTGCTTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATTTTGGTAAGTGACATATAATTTTAGAAATTACCTGCTTGACA  550

seq1  GTGCAGTTAGTATTTAACTTTAGTACAAGTATAGTTTATAACAATCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTTAGTATTTAACTTTAGTACAAGTATAGTTTATAACAATCATTT  600

seq1  GTAAATCAATAAACTATTAGAAAAGATTTTATTTAAATTATTACTTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATCAATAAACTATTAGAAAAGATTTTATTTAAATTATTACTTTAGT  650

seq1  TTTTCTACTAATAGTATACACTACACAGGCTATCTAC-TTTTTTTTTATA  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTCTACTAATAGTATACACTACACAGGCTATCTACTTTTTTTTTTATA  700

seq1  ATCAAGGGGGGGACCTTAATTATAACTAATCAAGAGAATGAATGACCTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGGGGGGACCTTAATTATAACTAATCAAGAGAATGAATGACCTGG  750

seq1  TATTAAAATGCAGTTAGAATCAGGGAAACAAGCTGTCAAAAACAGGCGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAATGCAGTTAGAATCAGGGAAACAAGCTGTCAAAAACAGGCGGA  800

seq1  AGCTCGTAGCTGCCTTCACCTGGAATTCTTTGTGAACTCAACGCCAGATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTAGCTGCCTTCACCTGGAATTCTTTGTGAACTCAACGCCAGATT  850

seq1  TCTGGAAAGAGAACCCCAGATTGGCCGCATGGTCTTCCCGATGGGTCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAGAGAACCCCAGATTGGCCGCATGGTCTTCCCGATGGGTCTGG  900

seq1  ATAAACCCCTGCATAGACGACTTAACCAAAAACCAAGATACATGTTGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCCCTGCATAGACGACTTAACCAAAAACCAAGATACATGTTGAAG  950

seq1  TCCCGGGATCCGGAGAGACAATCACGAATCCCACGCTGCAGGTGTGGTGG  999
      ||||||||||||||||||| |||||||||||||||||||| |||||   |
seq2  TCCCGGGATCCGGAGAGAC-ATCACGAATCCCACGCTGCA-GTGTG--TG  996

seq1  TGCTCAAAACTCGGTTTTCGGAATACCTGGGAACCCTTAAAATTCTAGTT  1049
      ||||| |||||||| |||||| ||||   ||||||  | |||||||||| 
seq2  TGCTC-AAACTCGG-TTTCGG-ATAC--TGGAACC--TTAAATTCTAGT-  1038

seq1  CCCACGCAAATGCATCCAGACCCTGCTCCGCTGAACGTTCTAGTATCTAC  1099
       |||||| ||||||| ||||||||||||||||| ||| |||||  |||||
seq2  -CCACGC-AATGCAT-CAGACCCTGCTCCGCTG-ACG-TCTAGATTCTAC  1083

seq1  AAAGTAGATTGACCTGCAAGGTCTCCAGAGACCTTAGGTGAGTGGGTAGG  1149
       ||||||||||| |||| | |||| |||||| |||| |||||| ||||||
seq2  -AAGTAGATTGA-CTGCCA-GTCT-CAGAGAACTTA-GTGAGT-GGTAGG  1127

seq1  GGGAAAGCCTTTGCTTCCTTCAGTGCATCAGTTCCC  1185
      |    |||   ||||| |||||||   |||||||||
seq2  G---CAGC---TGCTT-CTTCAGTCACTCAGTTCCC  1156