BAC Information

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BAC

Clone NameB6Ng01-346M07
Chromosome1 (Build37)
Map Location 102,971,003 - 103,123,846
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346M07.bB6Ng01-346M07.g
ACCGA128574GA128575
length1,0461,189
definitionB6Ng01-346M07.b B6Ng01-346M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,971,003 - 102,972,041)(103,122,652 - 103,123,846)
sequence
gaattcatattttataatttattcactcagaaaacacatcctaagcatct
tctctgcaacaatagatagtaatatactgtgaacatcatttgatatgtgg
tatatttatacatacatacatacataaacaaacatgcacacacaggtctt
atatatatgtgtgtgtgtataatttttgaatatgcatacacatgtacaag
aatatatgtatgtggtaaatgtacaagaatatatgtatgtggtaatgtga
tactgtatttcataaaatattttcaaatataaaagattaaaaattaggtt
gaaagaagagattttaagaatattttgtattaagaactcaaagaaaattc
tgtatgtttgtaattaaatatatataaagactgctttaccagagaccctt
cctacagacctaagtctaccatctacacttctcactgccctaacctagca
cccaggaggtttgaagactccctgctctaccagttatactatcaactgcc
agaagtccagctaagatgatcactgaatgcccttccccaatccaaagaag
caaacacacaaaagaggaatagatggaaggcaataattaaaatgagagct
caaatcaataaaagagaaatgagaacaatatgaagaattgatgaaacaaa
aaggcgcctctttagaaaagcaacaaaatatataaaccattagtcaaagt
atctaaaagaaatagataattttcagatagtcaccacttactgaagtcaa
gataatatgagataatttaaatagactcataacccctatggaaatataaa
caaccattaaaattcccccaacagaagagactgatagaatggccaaacaa
taactggccctacttgatagccatcccatgggcaagcaccaatccttgac
actattagtgattctctattattcttgcagacaggagcatgttgtcttct
aacttaatcagatgcacgcagtatatggagcttggtgactatgtaagaat
agaagaaaggatttcagcccagaaggggatagaaactacatagaaa

gaattccacccattaaaaacagaaactgttcttcagagagccactagaaa
agaatgatgcaaagagaaaccatcatcttgaatgttggccaacatttacc
tagctgcctgttaacaaatgaagcagaaccgaacacacggaagtgagatg
gctaagaggagccatgagatttatttgctttccatttattttactacttc
cagaaaataatgagtaatatataaaaattctacttttgtggagttcagga
aaatttttatagagcatttggaatttctaatcacctctattttctgtggc
cctgtaaagagtaaaacgtcatcaaatagtcttaaaaagtaaatagatgc
attactgtgaagatagtgaggcatgtagagaagaaaacttgaaaagtctt
cagctcaaactctagccaattaaccttttattctgatgcagtatggaaat
aatagtatattcctaagataacttatgttggtatttttaaaaaggcatag
aaaatcatgtgatgtatcacatcaggaaatctatccttttcccttctttc
tacaattttatttttagagtcacaaaagttcttcagaataatattgatga
tgctatttatgcaattttgaagtgtatttctaatcacacaacagcaaata
tcagttttgtttctctatctttagcagcattctgcttacatgataactcc
aaaaagctttgatacacagtaatctctttgacaatgtattactgtggtga
ttagcaccctgtagtcaacctttgatacaacagtcttcatcaagactttg
tttatttactcttttgtcacaatatcaagaaaagtaatgaatataatctc
taaatttgctatcgtgatgctagagtgactgcctgcaagtgtgttactgt
cacagtaatatctgcagcttctgttttcagagttatggtcttgtaacccc
ctatatagtagatataggaatttgagtattggcttaatcctagatactta
gaatatcttagctgactagattatatacagaacatattactataattcag
ttgtgaaaacattagaacagtctacagtaaagtgtgtccatggagttcat
tcttgaaagtgtcattaacagactctatttggggggctgtgacaggataa
taattgtatgagcattgaatggatcatacctagatgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_102971003_102972041
seq2: B6Ng01-346M07.b_48_1084

seq1  GAATTCATATTTTATAATTTATTCACTCAGAAAACACATCCTAAGCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTTATAATTTATTCACTCAGAAAACACATCCTAAGCATCT  50

seq1  TCTCTGCAACAATAGATAGTAATATACTGTGAACATCATTTGATATGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAACAATAGATAGTAATATACTGTGAACATCATTTGATATGTGG  100

seq1  TATATTTATACATACATACATACATAAACAAACATGCACACACAGGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTATACATACATACATACATAAACAAACATGCACACACAGGTCTT  150

seq1  ATATATATGTGTGTGTGTATAATTTTTGAATATGCATACACATGTACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGTGTGTGTGTATAATTTTTGAATATGCATACACATGTACAAG  200

seq1  AATATATGTATGTGGTAAATGTACAAGAATATATGTATGTGGTAATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGTATGTGGTAAATGTACAAGAATATATGTATGTGGTAATGTGA  250

seq1  TACTGTATTTCATAAAATATTTTCAAATATAAAAGATTAAAAATTAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTATTTCATAAAATATTTTCAAATATAAAAGATTAAAAATTAGGTT  300

seq1  GAAAGAAGAGATTTTAAGAATATTTTGTATTAAGAACTCAAAGAAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAGATTTTAAGAATATTTTGTATTAAGAACTCAAAGAAAATTC  350

seq1  TGTATGTTTGTAATTAAATATATATAAAGACTGCTTTACCAGAGACCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTTGTAATTAAATATATATAAAGACTGCTTTACCAGAGACCCTT  400

seq1  CCTACAGACCTAAGTCTACCATCTACACTTCTCACTGCCCTAACCTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGACCTAAGTCTACCATCTACACTTCTCACTGCCCTAACCTAGCA  450

seq1  CCCAGGAGGTTTGAAGACTCCCTGCTCTACCAGTTATACTATCAACTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGGTTTGAAGACTCCCTGCTCTACCAGTTATACTATCAACTGCC  500

seq1  AGAAGTCCAGCTAAGATGATCACTGAATGCCCTTCCCCAATCCAAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCAGCTAAGATGATCACTGAATGCCCTTCCCCAATCCAAAGAAG  550

seq1  CAAACACACAAAAGAGGAATAGATGGAAGGCAATAATTAAAATGAGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACACAAAAGAGGAATAGATGGAAGGCAATAATTAAAATGAGAGCT  600

seq1  CAAATCAATAAAAGAGAAATGAGAACAATATGAAGAATTGATGAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAATAAAAGAGAAATGAGAACAATATGAAGAATTGATGAAACAAA  650

seq1  AAGGCGCCTCTTTAGAAAAGCAACAAAATATATAAACCATTAGTCAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGCCTCTTTAGAAAAGCAACAAAATATATAAACCATTAGTCAAAGT  700

seq1  ATCTAAAAGAAATAGATAATTTTCAGATAGTCACCACTTACTGAAGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAAAGAAATAGATAATTTTCAGATAGTCACCACTTACTGAAGTCAA  750

seq1  GATAATATGAGATAATTTAAATAGACTCATAACCCCTATGGAAATATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATGAGATAATTTAAATAGACTCATAACCCCTATGGAAATATAAA  800

seq1  CAACCATTAAAATTCCCCCAACAGAAGAGACTGATAGAATGGCCAAACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTAAAATTCCCCCAACAGAAGAGACTGATAGAATGGCCAAACAA  850

seq1  TAACTGGCCCTACTTGATAGCCATCCCATGGGCAAGCACCAATCCTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGCCCTACTTGATAGCCATCCCATGGGCAAGCACCAATCCTTGAC  900

seq1  ACTATTAGTGATTCTCTATTATTCTTGCAGACAGGAGCATGTTGTCTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAGTGATTCTCTATTATTCTTGCAGACAGGAGCATGTTGTCTTCT  950

seq1  AACTTAATCAGATGCACGCAGTATATGGAGCTTGGTGACTAATGTAAGAA  1000
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AACTTAATCAGATGCACGCAGTATATGGAGCTTGGTGACT-ATGTAAGAA  999

seq1  TAGAAGAAAGGATTTCAGGCCCAGAAGGGGATAGAAACT  1039
      ||||||||||||||||| |||||||||||||||||||||
seq2  TAGAAGAAAGGATTTCA-GCCCAGAAGGGGATAGAAACT  1037


seq1: chr1_103122652_103123846
seq2: B6Ng01-346M07.g_69_1257 (reverse)

seq1  TGGCATCTAGTAATGATACCATAAATGCTCTATTATCTATTTATTAT-CT  49
      ||||||||||  ||||| |  | |||||||    ||  | ||||||| ||
seq2  TGGCATCTAGGTATGATCCATTCAATGCTC----ATACAATTATTATCCT  46

seq1  GTCAACAAAGCCCCCCAAATAGGAGTCTGTAATGGACACTTTCAAGAATG  99
      ||   || ||||||||||||| |||||||| |  ||||||||||||||||
seq2  GT---CACAGCCCCCCAAATA-GAGTCTGTTAATGACACTTTCAAGAATG  92

seq1  -ACTCATTGGACAC-TTTTACTGTAGACTG-TCT-ATGTTTTCACAACTG  145
       ||||  |||||||  |||||||||||||| ||| |||||||||||||||
seq2  AACTCCATGGACACACTTTACTGTAGACTGTTCTAATGTTTTCACAACTG  142

seq1  A--TATAGT-ATATGTTCTTGTATATAATTCTAGTCAGCTTAAGATATTC  192
      |  |||||| |||||||| ||||||||| |||||||||| ||||||||||
seq2  AATTATAGTAATATGTTC-TGTATATAA-TCTAGTCAGC-TAAGATATTC  189

seq1  TAAGTATTCTAAGGAATTAAGCCAATACTCAAATTCCTATATTCTACTAT  242
      |||||| ||||  | |||||||||||||||||||||||||| ||||||||
seq2  TAAGTA-TCTA--GGATTAAGCCAATACTCAAATTCCTATA-TCTACTAT  235

seq1  ATTAGGGGGTTACAAGACCAT-ACTCTGAAAACAGAAGCTGCAGATATTA  291
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  A-TAGGGGGTTACAAGACCATAACTCTGAAAACAGAAGCTGCAGATATTA  284

seq1  CTGTGACAGTAACACACTTGCAGGCAGTCACTCTAGCATCACGATAGC-A  340
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGTGACAGTAACACACTTGCAGGCAGTCACTCTAGCATCACGATAGCAA  334

seq1  ATTTAGAGATTATATTCATTACTTTTCTTGATATTGTGACAAAAGAGTAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGATTATATTCATTACTTTTCTTGATATTGTGACAAAAGAGTAA  384

seq1  ATAAACAAAGTCTTGATGAAGACTGTTGTATCAAAGGTTGACTACAGGGT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAAAGTCTTGATGAAGACTGTTGTATCAAAGGTTGACTACAGGGT  434

seq1  GCTAATCACCACAGTAATACATTGTCAAAGAGATTACTGTGTATCAAAGC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATCACCACAGTAATACATTGTCAAAGAGATTACTGTGTATCAAAGC  484

seq1  TTTTTGGAGTTATCATGTAAGCAGAATGCTGCTAAAGATAGAGAAACAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGGAGTTATCATGTAAGCAGAATGCTGCTAAAGATAGAGAAACAAA  534

seq1  ACTGATATTTGCTGTTGTGTGATTAGAAATACACTTCAAAATTGCATAAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATTTGCTGTTGTGTGATTAGAAATACACTTCAAAATTGCATAAA  584

seq1  TAGCATCATCAATATTATTCTGAAGAACTTTTGTGACTCTAAAAATAAAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCATCAATATTATTCTGAAGAACTTTTGTGACTCTAAAAATAAAA  634

seq1  TTGTAGAAAGAAGGGAAAAGGATAGATTTCCTGATGTGATACATCACATG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAAAGAAGGGAAAAGGATAGATTTCCTGATGTGATACATCACATG  684

seq1  ATTTTCTATGCCTTTTTAAAAATACCAACATAAGTTATCTTAGGAATATA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTATGCCTTTTTAAAAATACCAACATAAGTTATCTTAGGAATATA  734

seq1  CTATTATTTCCATACTGCATCAGAATAAAAGGTTAATTGGCTAGAGTTTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATTTCCATACTGCATCAGAATAAAAGGTTAATTGGCTAGAGTTTG  784

seq1  AGCTGAAGACTTTTCAAGTTTTCTTCTCTACATGCCTCACTATCTTCACA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGACTTTTCAAGTTTTCTTCTCTACATGCCTCACTATCTTCACA  834

seq1  GTAATGCATCTATTTACTTTTTAAGACTATTTGATGACGTTTTACTCTTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCATCTATTTACTTTTTAAGACTATTTGATGACGTTTTACTCTTT  884

seq1  ACAGGGCCACAGAAAATAGAGGTGATTAGAAATTCCAAATGCTCTATAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCCACAGAAAATAGAGGTGATTAGAAATTCCAAATGCTCTATAAA  934

seq1  AATTTTCCTGAACTCCACAAAAGTAGAATTTTTATATATTACTCATTATT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCTGAACTCCACAAAAGTAGAATTTTTATATATTACTCATTATT  984

seq1  TTCTGGAAGTAGTAAAATAAATGGAAAGCAAATAAATCTCATGGCTCCTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAGTAGTAAAATAAATGGAAAGCAAATAAATCTCATGGCTCCTC  1034

seq1  TTAGCCATCTCACTTCCGTGTGTTCGGTTCTGCTTCATTTGTTAACAGGC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCATCTCACTTCCGTGTGTTCGGTTCTGCTTCATTTGTTAACAGGC  1084

seq1  AGCTAGGTAAATGTTGGCCAACATTCAAGATGATGGTTTCTCTTTGCATC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGTAAATGTTGGCCAACATTCAAGATGATGGTTTCTCTTTGCATC  1134

seq1  ATTCTTTTCTAGTGGCTCTCTGAAGAACAGTTTCTGTTTTTAATGGGTGG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTAGTGGCTCTCTGAAGAACAGTTTCTGTTTTTAATGGGTGG  1184

seq1  AATTC  1195
      |||||
seq2  AATTC  1189


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