BAC Information

Click to search

BAC

Clone NameB6Ng01-347A23
Chromosome1 (Build37)
Map Location 136,717,393 - 136,855,853
singlet/doubletdoublet
Overlap genePpp1r12b
Upstream geneOptc, Prelp, LOC100042352, LOC100042358, Fmod, Btg2, EG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2
Downstream geneUbe2t, Lgr6, Ptprv, LOC100042432, Ptpn7, Arl8a, Gpr37l1, LOC100043064, Elf3, Rnpep, Timm17a, Lmod1, Tmem58, Ipo9, Nav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347A23.bB6Ng01-347A23.g
ACCGA128779GA128780
length912951
definitionB6Ng01-347A23.b B6Ng01-347A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,717,393 - 136,718,306)(136,854,915 - 136,855,853)
sequence
gaattctacatctggatcataagggagcaggatggactgtgagcccctag
gcctggcttgagcttgtgcccacctcctagtgacactcttccacacctcc
taatagtggtgctctgtatggccaagcattcaaacacacaggtctgtggg
ggccatacctattcagaccactctgttagggcacttgtgtgtaacattta
cgcagtttaaaggatcgtgtttagatatgagagtctggtttgcctaagag
actcctgccactcagtgtggctgttatctaactcttaaacatgcttaact
gacaagatggtaggagaaaagtcacaactgataacttttaaccactcgtc
tttacactgtaaccatctaacctttcaggtcctacctaaaataaaatagc
acttctacaagtaacatctgttaatgccacaagcttaacattcctgctgg
agcaaatctctaaacactccatttgctgaaaaggggcttcaaatcccaca
ctaagctttctacctcaatcacggggctagaacataacattagctaagcc
aaagccatggttaaggctctccagcatgctatcaacagaagaaacgaata
cttttgtaaccaaggcaatccttagactccagctcaaaggggaacaatta
ttcctggaggctcttatgatcaaagccatcagacgaccgactactttgat
aaaagacttgaacccaagtgctttgaagacaaccttgtgaaactgtcatc
atggtaatgacagggtttcaggaatgttcaagtagaaaatgatccttctc
tcaagaacatcattaagttggtttcgaatatgtactggaaaatagaaaca
ctttgggaaaatacaaagaggaattgtttttacttctttacttattgtgt
gtgtgtgtgtgt
gaattccggattcttcttggggtatccatccctaggctaactcggacacc
ataattggtgcccaataaacagaattaattgacaaactctgactgacctg
tataattggtaacacagtctaagcctctttatacaatatactgagagctc
tctgaaagtgcagtgaaatgcatgatggagacaggagtcttcgtcctggg
ggctcgcctagggcaataaaactcctcaaataagatagattgactaaaat
aaccttttcctactttatagtgtagctgaggaaatgataaaataaaagga
gctagggggtatcatttgctactcataaaagcacatgttcatcctactga
aaaagagacgctgtctcaaaaaaaatcagtctcgacagtgggaggttcca
taaacagggagaacactactttcttactgtaactggagtatttgtttttt
tcttttttcttggataagtgagaagataacactttctttggagactttta
ccgaaagcatataaggcttacttctttagataatttgagtgcatacccac
ctaattggagagaaatgtctcttccagctatgaggtgaggaagaactata
ataattactgttatcttaattgctgtaactacatcagtcaaaaactatac
tataaaacatctgtctctgtaaacttgaaacggttatcttacttaaaatg
aaagctatgtttgttttgttttttcccaaatcaccttcacccaaccaaaa
atggtcagaatatatgtatactgtcagataactgaactgttgtgatagct
tatgagtgtatcatacctcatcttaagatgtgtagattcatgtattgcca
gggcccttgctcctgcttcctgatagggtggtcacgacaccctactgaaa
gatagctttgaattactgatccattggctcccacgttctgagtgccataa
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_136717393_136718306
seq2: B6Ng01-347A23.b_44_955

seq1  GAATTCTACATCTTGATCAGAAGGGAGCAGGAAAAGACTTTGAGCCACTA  50
      ||||||||||||| ||||| ||||||||||| |  |||| |||||| |||
seq2  GAATTCTACATCTGGATCATAAGGGAGCAGG-ATGGACTGTGAGCCCCTA  49

seq1  GGCCTGGCTTGAGCTCAAAGCCCACCTCCTAGTGACACTCTTCCACACCT  100
      |||||||||||||||    |||||||||||||||||||||||||||||||
seq2  GGCCTGGCTTGAGCT-TGTGCCCACCTCCTAGTGACACTCTTCCACACCT  98

seq1  CCTAATAGTGCTGCTCTGTATGGCCAAGCATTCAAACACACAGGTCTGTG  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGTGGTGCTCTGTATGGCCAAGCATTCAAACACACAGGTCTGTG  148

seq1  GGGGCCATACCTATTCAGACCACTCTGTTAGGGCACTTGTGTGTAACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCATACCTATTCAGACCACTCTGTTAGGGCACTTGTGTGTAACATT  198

seq1  TACGCAGTTTAAAGGATCGTGTTTAGATATGAGAGTCTGGTTTGCCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCAGTTTAAAGGATCGTGTTTAGATATGAGAGTCTGGTTTGCCTAAG  248

seq1  AGACTCCTGCCACTCAGTGTGGCTGTTATCTAACTCTTAAACATGCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTGCCACTCAGTGTGGCTGTTATCTAACTCTTAAACATGCTTAA  298

seq1  CTGACAAGATGGTAGGAGAAAAGTCACAACTGATAACTTTTAACCACTCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAGATGGTAGGAGAAAAGTCACAACTGATAACTTTTAACCACTCG  348

seq1  TCTTTACACTGTAACCATCTAACCTTTCAGGTCCTACCTAAAATAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACACTGTAACCATCTAACCTTTCAGGTCCTACCTAAAATAAAATA  398

seq1  GCACTTCTACAAGTAACATCTGTTAATGCCACAAGCTTAACATTCCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTCTACAAGTAACATCTGTTAATGCCACAAGCTTAACATTCCTGCT  448

seq1  GGAGCAAATCTCTAAACACTCCATTTGCTGAAAAGGGGCTTCAAATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAAATCTCTAAACACTCCATTTGCTGAAAAGGGGCTTCAAATCCCA  498

seq1  CACTAAGCTTTCTACCTCAATCACGGGGCTAGAACATAACATTAGCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGCTTTCTACCTCAATCACGGGGCTAGAACATAACATTAGCTAAG  548

seq1  CCAAAGCCATGGTTAAGGCTCTCCAGCATGCTATCAACAGAAGAAACGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCATGGTTAAGGCTCTCCAGCATGCTATCAACAGAAGAAACGAA  598

seq1  TACTTTTGTAACCAAGGCAATCCTTAGACTCCAGCTCAAAGGGGAACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTGTAACCAAGGCAATCCTTAGACTCCAGCTCAAAGGGGAACAAT  648

seq1  TATTCCTGGAGGCTCTTATGATCAAAGCCATCAGACGACCGACTACTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGGAGGCTCTTATGATCAAAGCCATCAGACGACCGACTACTTTG  698

seq1  ATAAAAGACTTGAACCCAAGTGCTTTGAAGACAACCTTGTGAAACTGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGACTTGAACCCAAGTGCTTTGAAGACAACCTTGTGAAACTGTCA  748

seq1  TCATGGTAATGACAGGGTTTCAGGAATGTTCAAGTAGAAAATGATCCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGTAATGACAGGGTTTCAGGAATGTTCAAGTAGAAAATGATCCTTC  798

seq1  TCTCAAGAACATCATTAAGTTGGTTTCGAATATGTACTGGAAAATAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAACATCATTAAGTTGGTTTCGAATATGTACTGGAAAATAGAAA  848

seq1  CACTTTGGGAAAATACAAAGAGGAATTGTTTTTACTTCTTTACTTATTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGGGAAAATACAAAGAGGAATTGTTTTTACTTCTTTACTTATTGT  898

seq1  GTGTGTGTGTGTGT  914
      ||||||||||||||
seq2  GTGTGTGTGTGTGT  912

seq1: chr1_136854915_136855853
seq2: B6Ng01-347A23.g_76_1015 (reverse)

seq1  ATTATAGCACTCTGAACGTGGGAGCAAATGGATCAGAAATTCAAAGCTAT  50
      ||||| |||||| |||||||||||| |||||||||| |||||||||||||
seq2  ATTATGGCACTCAGAACGTGGGAGCCAATGGATCAGTAATTCAAAGCTAT  50

seq1  CTTTCTGTAGGGGGGTTGAGGCCACCCTATCAACGTGCTGGGGC-AGGGC  99
      ||||| ||| ||| || | | |||||||||||    || || || |||||
seq2  CTTTCAGTA-GGGTGTCGTGACCACCCTATCAGGAAGCAGGAGCAAGGGC  99

seq1  CCTGGCAATACATGAATCTTTACATTTTTTTAAGA-GTATTTAAGAAACT  148
      |||||||||||||||||||  |||| ||   | || ||||   | |  | 
seq2  CCTGGCAATACATGAATCTACACATCTTAAGATGAGGTATGATACACTCA  149

seq1  TAAGCTATCAAACTTGTTCAGTGAGCTGACAGTATACATTTATTCTTTGA  198
      |||||||||| |   ||||||| | |||||||||||||| |||||  |||
seq2  TAAGCTATCACAACAGTTCAGTTATCTGACAGTATACATATATTC--TGA  197

seq1  -AATTTTTGGTTGGGTGAAGGTGATTTGGGAAAAAAC-AAACAAACATAG  246
        ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCATTTTTGGTTGGGTGAAGGTGATTTGGGAAAAAACAAAACAAACATAG  247

seq1  CTTTAATTTTAAGTAAGAAAACCTTTTCAAGTTTACAGAGACAGATGTTT  296
      |||| ||||||||||||| |||| ||||||||||||||||||||||||||
seq2  CTTTCATTTTAAGTAAGATAACCGTTTCAAGTTTACAGAGACAGATGTTT  297

seq1  TATAGTATAGTTTTTGACTGATGTAGTTAAAGCAATTAAGATAATAATAA  346
      ||||||||||||||||||||||||||||| |||||||||||||| | |||
seq2  TATAGTATAGTTTTTGACTGATGTAGTTACAGCAATTAAGATAACAGTAA  347

seq1  TTATTATTGTTCTTACGAACCACATAGCTGGAAGATACATTTCTCTCCAA  396
      ||||||| |||||| |  ||| ||||||||||||| ||||||||||||||
seq2  TTATTATAGTTCTTCCTCACCTCATAGCTGGAAGAGACATTTCTCTCCAA  397

seq1  TTAGGTGGGTATGCACTTAAATTATCTAAAGAATTAAGCCTTTTATGCTT  446
      ||||||||||||||||| ||||||||||||||| |||||||| |||||||
seq2  TTAGGTGGGTATGCACTCAAATTATCTAAAGAAGTAAGCCTTATATGCTT  447

seq1  TCTGTAAAAGTCTCCAAAGAAAGTGTTATCCTCTTACTTCTACAAGAAAA  496
      || ||||||||||||||||||||||||||| ||| |||| | ||||||||
seq2  TCGGTAAAAGTCTCCAAAGAAAGTGTTATCTTCTCACTTATCCAAGAAAA  497

seq1  AAGAAAAAAACAAATACTCCAGTTACAGTAAGAAAGTAGTGTTCTCCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAACAAATACTCCAGTTACAGTAAGAAAGTAGTGTTCTCCCTG  547

seq1  TTTCTGGAACCTCCCACTGTCGAGACTGATTTTTTCTGAGACAGCGTCTC  596
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTATGGAACCTCCCACTGTCGAGACTGATTTTTTTTGAGACAGCGTCTC  597

seq1  TTTTGCCGTAGGCTGAACCTGTGCTTTTATGAGTAGCAAATGCTAACACC  646
      |||| | ||||| ||||| ||||||||||||||||||||||| || | ||
seq2  TTTTTCAGTAGGATGAACATGTGCTTTTATGAGTAGCAAATGATACCCCC  647

seq1  TAGCTCCTTTTATTTTATCATTTCCTCAGCTACACTATAAAGTAGGAAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCTTTTATTTTATCATTTCCTCAGCTACACTATAAAGTAGGAAAA  697

seq1  GGTTATTTTAGTCAATCTATCTTATTTACTGAGTTCTATTGCCCTAGGGG  746
      |||||||||||||||||||||||||||   ||||| |||||||||||| |
seq2  GGTTATTTTAGTCAATCTATCTTATTTGAGGAGTTTTATTGCCCTAGGCG  747

seq1  TGTACCCTGTATGACTACTCCTGTCTTTATACTGCATTTCACTGCACTTT  796
       |  ||| | | ||  ||||||||||  ||  ||||||||||||||||||
seq2  AGCCCCCAGGACGAAGACTCCTGTCTCCATCATGCATTTCACTGCACTTT  797

seq1  TAGAGAGCTCTCAGTATATTGTATAAAGAGGCTTAGAGTCTGTTACCAAT  846
       |||||||||||||||||||||||||||||||||||| | ||||||||||
seq2  CAGAGAGCTCTCAGTATATTGTATAAAGAGGCTTAGACTGTGTTACCAAT  847

seq1  TCTCCTGGTCAGTCAGACTTTGTCAATTACTTCTGTTTATTCTGCACCAA  896
      | | | ||||||||||| ||||||||||| |||||||||||  |||||||
seq2  TATACAGGTCAGTCAGAGTTTGTCAATTAATTCTGTTTATTGGGCACCAA  897

seq1  TTATACTGTTTGAGTTTGCTTAGGGATGGATACCCCAAGAAGA  939
      ||||  |||  ||||| || |||||||||||||||||||||||
seq2  TTATGGTGTCCGAGTTAGCCTAGGGATGGATACCCCAAGAAGA  940