BAC Information

Click to search

BAC

Clone NameB6Ng01-347F02
Chromosome1 (Build37)
Map Location 190,627,421 - 190,735,031
singlet/doubletdoublet
Overlap geneUsh2a
Upstream geneEsrrg, 9330162B11Rik
Downstream geneKctd3, Kcnk2, LOC100042424, LOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347F02.bB6Ng01-347F02.g
ACCGA128956GA128957
length4691,095
definitionB6Ng01-347F02.b B6Ng01-347F02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(190,734,557 - 190,735,031)(190,627,421 - 190,628,532)
sequence
caagcgcagattctataagcatactgcctccacggctgcagacccgtgtc
attatacacccatgcattcccttgcgtgttgtattctgtgaaaacagtgt
tcccgtctgcctgccatgttgtgttcccccagtcctcttcctccgagcgt
ctgcggatcacttcgtaatggattatcttcccattggggctagccggctg
agaccagtgcagccttacattggtgggccccacagactggatggtaggag
ccatctgagtatctggaggggcttcctctgtccagagaggctgaggcacc
gagtgagcacagcctgctgtcgtgcaggcctccaggatcaaggtatagag
agtgaagggggccaggcgcctgaagagaaactgccgacccaggccagagt
actccaggaccccatcattgaagatgttgtatgcctgcaggatgaagaga
ggaggagggggagggggat

gaattctttccaagttatgaactctcatcttcagttaatgtgcatcaaaa
tccactcacacatacatgcatgtgcacaagtacacacccacacaagcact
cgtgcaaatcgcctgccttcttcacacccttgaagtccacccgtgggcca
agtttcagaatcactttcttttccttccatgtgacaatgacagataacca
gtcaggtgtttctttttcaaacgaaatcatttgtattatttttaattcta
tgcatgcgtgtgaggggtgtatacacatgcttgcaggtgcctctggaggc
cataagagggcatcacaggtagttgtgaaccacctggcaaaggtgctgag
atctgaacttgagtcctctgcaagagcagtcagtaccctaaccgccgagt
cctctcttgaccactaagtcctcttatcggcaaccagtgaagaagccttt
ctcaaattgtaatgttcctcaactcctcccaagcaagactgacatagttc
tggggtgctttctggacacctaaccctggtagccacggtggagaagacag
aggctcaggacttgtaagatgaaggagaaaaatctttttattactgtgac
cttcccttcggacacactgaaaacagacaggttctcagcctcctctgctc
tctctctttctggtcttgccccatggttacggctgctcacagatctgttt
ctgtccaccccggccactcaccacacctgccggacaaggcttggatccta
caacacagttccaaaacctggcctctctcaccgcctggcattgtgagcct
gccacgacaccggcctggctcgtaaaacatccctttatgtactttatgac
ttaaactcttttatttgcctgcaggagccctttaacaaaatcacattgaa
ttgactttctcacaccaaatcaaatctccctggtcccagttcagtgtctt
tgtcatatgtattttataaatggagtgattaacagatgctgtaggacgag
tgctgggtagcgttatgttttagtgctctctctggcgatgagcagtgtga
gcagtatacagtatcttgggatggaggtcatcctcagatacgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_190734557_190735031
seq2: B6Ng01-347F02.b_49_523 (reverse)

seq1  ATCCCCCTCCCCCTCCTCCTCTCTTCATCCTGCAGGCATACAACATCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCCTCCCCCTCCTCCTCTCTTCATCCTGCAGGCATACAACATCTTC  50

seq1  AATGATGGGGTCCTGGAGTACTCTGGCCTGGGTCGGCAGTTTCTCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGGGTCCTGGAGTACTCTGGCCTGGGTCGGCAGTTTCTCTTCAG  100

seq1  GCGCCTGGCCCCCTTCACTCTCTATACCTTGATCCTGGAGGCCTGCACGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCTGGCCCCCTTCACTCTCTATACCTTGATCCTGGAGGCCTGCACGA  150

seq1  CAGCAGGCTGTGCTCACTCGGTGCCTCAGCCTCTCTGGACAGAGGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGCTGTGCTCACTCGGTGCCTCAGCCTCTCTGGACAGAGGAAGCC  200

seq1  CCTCCAGATACTCAGATGGCTCCTACCATCCAGTCTGTGGGGCCCACCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGATACTCAGATGGCTCCTACCATCCAGTCTGTGGGGCCCACCAA  250

seq1  TGTAAGGCTGCACTGGTCTCAGCCGGCTAGCCCCAATGGGAAGATAATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCTGCACTGGTCTCAGCCGGCTAGCCCCAATGGGAAGATAATCC  300

seq1  ATTACGAAGTGATCCGCAGACGCTCGGAGGAAGAGGACTGGGGGAACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGAAGTGATCCGCAGACGCTCGGAGGAAGAGGACTGGGGGAACACA  350

seq1  ACATGGCAGGCAGACGGGAACACTGTTTTCACAGAATACAACACGCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAGGCAGACGGGAACACTGTTTTCACAGAATACAACACGCAAGG  400

seq1  GAATGCATGGGTGTATAATGACACGGGTCTGCAGCCGTGGAGGCAGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCATGGGTGTATAATGACACGGGTCTGCAGCCGTGGAGGCAGTATG  450

seq1  CTTATAGAATCTGCGCTTGGAATTC  475
      |||||||||||||||||||||||||
seq2  CTTATAGAATCTGCGCTTGGAATTC  475


seq1: chr1_190627421_190628532
seq2: B6Ng01-347F02.g_65_1159

seq1  GAATTCTTTCCAAGTTATGAACTCTCATCTTCAGTTAATGTGCATCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCAAGTTATGAACTCTCATCTTCAGTTAATGTGCATCAAAA  50

seq1  TCCACTCACACATACATGCATGTGCACAAGTACACACCCACACAAGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCACACATACATGCATGTGCACAAGTACACACCCACACAAGCACT  100

seq1  CGTGCAAATCGCCTGCCTTCTTCACACCCTTGAAGTCCACCCGTGGGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCAAATCGCCTGCCTTCTTCACACCCTTGAAGTCCACCCGTGGGCCA  150

seq1  AGTTTCAGAATCACTTTCTTTTCCTTCCATGTGACAATGACAGATAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGAATCACTTTCTTTTCCTTCCATGTGACAATGACAGATAACCA  200

seq1  GTCAGGTGTTTCTTTTTCAAACGAAATCATTTGTATTATTTTTAATTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGTTTCTTTTTCAAACGAAATCATTTGTATTATTTTTAATTCTA  250

seq1  TGCATGCGTGTGAGGGGTGTATACACATGCTTGCAGGTGCCTCTGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCGTGTGAGGGGTGTATACACATGCTTGCAGGTGCCTCTGGAGGC  300

seq1  CATAAGAGGGCATCACAGGTAGTTGTGAACCACCTGGCAAAGGTGCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAGGGCATCACAGGTAGTTGTGAACCACCTGGCAAAGGTGCTGAG  350

seq1  ATCTGAACTTGAGTCCTCTGCAAGAGCAGTCAGTACCCTAACCGCCGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACTTGAGTCCTCTGCAAGAGCAGTCAGTACCCTAACCGCCGAGT  400

seq1  CCTCTCTTGACCACTAAGTCCTCTTATCGGCAACCAGTGAAGAAGCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTGACCACTAAGTCCTCTTATCGGCAACCAGTGAAGAAGCCTTT  450

seq1  CTCAAATTGTAATGTTCCTCAACTCCTCCCAAGCAAGACTGACATAGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTGTAATGTTCCTCAACTCCTCCCAAGCAAGACTGACATAGTTC  500

seq1  TGGGGTGCTTTCTGGACACCTAACCCTGGTAGCCACGGTGGAGAAGACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGCTTTCTGGACACCTAACCCTGGTAGCCACGGTGGAGAAGACAG  550

seq1  AGGCTCAGGACTTGTAAGATGAAGGAGAAAAATCTTTTTATTACTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGGACTTGTAAGATGAAGGAGAAAAATCTTTTTATTACTGTGAC  600

seq1  CTTCCCTTCGGACACACTGAAAACAGACAGGTTCTCAGCCTCCTCTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTCGGACACACTGAAAACAGACAGGTTCTCAGCCTCCTCTGCTC  650

seq1  TCTCTCTTTCTGGTCTTGCCCCATGGTTACGGCTGCTCACAGATCTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTCTGGTCTTGCCCCATGGTTACGGCTGCTCACAGATCTGTTT  700

seq1  CTGTCCACCCCGGCCACTCACCACACCTGCCGGACAAGGCTTGGATCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACCCCGGCCACTCACCACACCTGCCGGACAAGGCTTGGATCCTA  750

seq1  CAACACAGTTCCAAAACCTGGCCTCTCTCACCGCCTGGCATTGTGAGCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAGTTCCAAAACCTGGCCTCTCTCACCGCCTGGCATTGTGAGCCT  800

seq1  GCCACGACACCGGCCTGGCTCGTAAAACATCCCTTTATGTACTTTATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACGACACCGGCCTGGCTCGTAAAACATCCCTTTATGTACTTTATGAC  850

seq1  TTAAACTCTTTTATTTGCCTGCAGGAGCCCTTTAACAAAATCACATTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTTTTATTTGCCTGCAGGAGCCCTTTAACAAAATCACATTGAA  900

seq1  TTGACTTTCTCACACCAAATCAAATCTCCCTGGTCCCAGTTCAGTTGTCT  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTGACTTTCTCACACCAAATCAAATCTCCCTGGTCCCAGTTCAG-TGTCT  949

seq1  TTGTCAATATGTATTTTATAAATGGAGTGAATTAACAGATGCTGTAGGAA  1000
      ||||| ||||||||||||||||||||||| |||||||||||||||||| |
seq2  TTGTC-ATATGTATTTTATAAATGGAGTG-ATTAACAGATGCTGTAGG-A  996

seq1  CGGAAGTGCTGGGGTAGCGTTTATGGTTTTTAGTGCTCTCTCTGGGCGGA  1050
      ||  |||||| |||||||| |||||  ||||||||||||||||||   ||
seq2  CG--AGTGCT-GGGTAGCG-TTATG--TTTTAGTGCTCTCTCTGG--CGA  1038

seq1  TGAGCAGTGTGGAAGCAGTATACAGGTATCTTGGGATGAAAGTCATTCCC  1100
      |||||||||||  ||||||||||| ||||||||||||| | |||||  ||
seq2  TGAGCAGTGTG--AGCAGTATACA-GTATCTTGGGATGGAGGTCAT--CC  1083

seq1  TCAGATACGTAT  1112
      ||||||||||||
seq2  TCAGATACGTAT  1095


| Home | SequenceCutter | Blast | Download |