BAC Information

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BAC

Clone NameB6Ng01-347F16
Chromosome1 (Build37)
Map Location 118,977,719 - 119,011,913
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5a
Downstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347F16.bB6Ng01-347F16.g
ACCGA128982GA128983
length1,1431,172
definitionB6Ng01-347F16.b B6Ng01-347F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,977,719 - 118,978,884)(119,010,730 - 119,011,913)
sequence
gaattcatataacatttggtacaaggtgatatgtaaataaatgcccattt
gaaaattaaaaaaaaaaaagagtaaaaggacacatcctacttggaaacca
gtattttgctttcaggaagcattagcataaacttttttatggaaaaatat
gttttgtgccaacagacacatttactaaaagcccagtatttcagccaact
ccaagttggatctcaagagctatctattggggtatcctccagttaagcac
catttgcagaggaaaataaaaatagggtggaagaaaagtaatccaaagca
aaatagtagtgggttcatttttctcattaaaatcagagaagtgattaatg
tcattccttgttataactaaattaatatgtgtagaagaaaaacaaaaaca
cagcagtgcatcaaattccaatcaaaggacagaaatgaaagaacacaaat
taagtcactcattatacatgtcaatgatttgccatagataacttgagaat
tataccctgtaatcatgattaaaaactctcttagcctactcagatgtgct
gtgtttatagttaacttcattttcccaacagacaatctgtttttcagact
gcccctcctctcttctcctctttctcactccctcttattttcttttagca
atttaaaccatctagtgtgtaccttgtatacttttgaatatttataattt
tctcactttatcaaccgagattaaagacttaatctagcagctaatcccat
catcttttttgataaaagcaagtatatctttggtcagtgcctgtggaacc
caaggaatttatcacaagtgaataaaaaatccaattaatccttcgatttc
ttcccagtcatgtggatcttcaacttattcacttgaatgcatatatttac
cactgttttaccgagagatatttttagagtttatagaaaattgattcaga
tcaaaacttaagtgatttaaattgggaaatgtttgcaatatttttgcagc
agaattctactagaaagaaatagcagatgctatgtttatcaaacagactg
cttcagtcctgacatgaagctttcttagatttttttctttggttttggtt
ttttcgagaatgattctctgtaagcctggcctgtctgaactca
gaattcaacccttgttggaaggccaaaaagctggatactgaggtcagtga
aaggcatggttggagtgattgcagcagcaatgataaatactctcacttgc
aggaagtacagtctggtcagcgagcagttccttttcttcctcagacttct
gttttctgggccaccactgagataggctgaccaatttagtgaaggatctt
cccccttagttaatcttttcaggaaatcttcccttcattcagataactat
ccgatcgcaagtggagaaaacacttgtctgcttgttgacacagatatatt
atgtgagggagatataataatttataataattcaagtatttttcataaag
tcattctaatgaaagctacaatgttataggtggtgacctttataaaggaa
gtggaagaggagagatcaaaattataaaggaaattgcctcacagacatgt
gtacatacacacaaacgtacatgtggatacaggggaaattcataaattac
aaatacattacaaagtgtagaggaaattgctaggcagaagtttgtaatac
aattgttctcttattcctgtaattagatgtgaagtctctgaatagtgggg
ctgaggttcagttgacagtgtcagtgagtatacacgaggtcctgaatttc
attcccagaagcctacaagtcaagagtggtggcacatgcttgccatctct
catgtgtgaggtggaggcaggaagatcaaatgtccaaggtcattctcata
taacaagttcaaagccattctggcatactggaaactgcttaacagacaca
cacacacaataaataaatgaataaacaaacaaacaaacaaacaaacatag
ataaaggaaaggcttgaaggttcaagtccatcatttagttagttctagcc
acttcctgcctaatatatcagagtccaatcatgaacttgaaacatagcta
gcaattctgaaccaatccctttgtaagttacttgaatttctacacattaa
atccattctgacaccattcatcaatagttctttcacttatttccagttta
tcctgtagattctaagcaatagaacatataaagcagtgcgaacattgtgt
cttgcatgagttaacattgccacaggatgccttctgttatctctttaagg
gagcccagtgagatagcctgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_118977719_118978884
seq2: B6Ng01-347F16.b_51_1193

seq1  GAATTCATATAACATTTGGTACAAGGTGATATGTAAATAAATGCCCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAACATTTGGTACAAGGTGATATGTAAATAAATGCCCATTT  50

seq1  GAAAATTAAAAAAAAAAAAGAGTAAAAGGACACATCCTACTTGGAAACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAAAAAAAAAAAAGAGTAAAAGGACACATCCTACTTGGAAACCA  100

seq1  GTATTTTGCTTTCAGGAAGCATTAGCATAAACTTTTTTATGGAAAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGCTTTCAGGAAGCATTAGCATAAACTTTTTTATGGAAAAATAT  150

seq1  GTTTTGTGCCAACAGACACATTTACTAAAAGCCCAGTATTTCAGCCAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGCCAACAGACACATTTACTAAAAGCCCAGTATTTCAGCCAACT  200

seq1  CCAAGTTGGATCTCAAGAGCTATCTATTGGGGTATCCTCCAGTTAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTTGGATCTCAAGAGCTATCTATTGGGGTATCCTCCAGTTAAGCAC  250

seq1  CATTTGCAGAGGAAAATAAAAATAGGGTGGAAGAAAAGTAATCCAAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCAGAGGAAAATAAAAATAGGGTGGAAGAAAAGTAATCCAAAGCA  300

seq1  AAATAGTAGTGGGTTCATTTTTCTCATTAAAATCAGAGAAGTGATTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAGTGGGTTCATTTTTCTCATTAAAATCAGAGAAGTGATTAATG  350

seq1  TCATTCCTTGTTATAACTAAATTAATATGTGTAGAAGAAAAACAAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCTTGTTATAACTAAATTAATATGTGTAGAAGAAAAACAAAAACA  400

seq1  CAGCAGTGCATCAAATTCCAATCAAAGGACAGAAATGAAAGAACACAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGCATCAAATTCCAATCAAAGGACAGAAATGAAAGAACACAAAT  450

seq1  TAAGTCACTCATTATACATGTCAATGATTTGCCATAGATAACTTGAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCACTCATTATACATGTCAATGATTTGCCATAGATAACTTGAGAAT  500

seq1  TATACCCTGTAATCATGATTAAAAACTCTCTTAGCCTACTCAGATGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCTGTAATCATGATTAAAAACTCTCTTAGCCTACTCAGATGTGCT  550

seq1  GTGTTTATAGTTAACTTCATTTTCCCAACAGACAATCTGTTTTTCAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTATAGTTAACTTCATTTTCCCAACAGACAATCTGTTTTTCAGACT  600

seq1  GCCCCTCCTCTCTTCTCCTCTTTCTCACTCCCTCTTATTTTCTTTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCTCTCTTCTCCTCTTTCTCACTCCCTCTTATTTTCTTTTAGCA  650

seq1  ATTTAAACCATCTAGTGTGTACCTTGTATACTTTTGAATATTTATAATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACCATCTAGTGTGTACCTTGTATACTTTTGAATATTTATAATTT  700

seq1  TCTCACTTTATCAACCGAGATTAAAGACTTAATCTAGCAGCTAATCCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTTATCAACCGAGATTAAAGACTTAATCTAGCAGCTAATCCCAT  750

seq1  CATCTTTTTTGATAAAAGCAAGTATATCTTTGGTCAGTGCCTGTGGAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTTGATAAAAGCAAGTATATCTTTGGTCAGTGCCTGTGGAACC  800

seq1  CAAGGAATTTATCACAAGTGAATAAAAAATCCAATTAATCCTTCGATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATTTATCACAAGTGAATAAAAAATCCAATTAATCCTTCGATTTC  850

seq1  TTCCCAGTCATGTGGATCTTCAACTTATTCACTTGAATGCATATATTTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTCATGTGGATCTTCAACTTATTCACTTGAATGCATATATTTAC  900

seq1  CACTGTTTTACCGAGAGATATTTTTAGAGTTTATAGAAAATTGATTCAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTTACCGAGAGATATTTTTAGAGTTTATAGAAAATTGATTCAGA  950

seq1  TCAAAACTTAAGTGATTTAAATTGGGAAATGTTTGCAAATATTTTTGCAG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCAAAACTTAAGTGATTTAAATTGGGAAATGTTTGC-AATATTTTTGCAG  999

seq1  GCAAGAATTCTACTAGGAAAGAAATAGCAGGATGCTAATTGTTTTAATCA  1050
         |||||||||||| ||||||||||||| |||||||  |||||  ||||
seq2  --CAGAATTCTACTA-GAAAGAAATAGCA-GATGCTA--TGTTT--ATCA  1041

seq1  AACAGACTGGTTCAAGTCTTGACATGGAAGGCTTTCTTTAGATTTTTTTT  1100
      ||||||||| ||| |||| |||||||  | |||||| |||||  ||||||
seq2  AACAGACTGCTTC-AGTCCTGACATG--AAGCTTTC-TTAGA--TTTTTT  1085

seq1  TCTTTTGTTTTTTGTTTTTTTTTCGAGACAGGGTTTCTCTGTATAGCCTG  1150
      ||||| ||||    |  ||||||||||  |  | ||||||||| ||||||
seq2  TCTTTGGTTT----TGGTTTTTTCGAG--AATGATTCTCTGTA-AGCCTG  1128

seq1  G-CTGTCCTGGAACTCA  1166
      | |||||   |||||||
seq2  GCCTGTC--TGAACTCA  1143

seq1: chr1_119010730_119011913
seq2: B6Ng01-347F16.g_66_1237 (reverse)

seq1  CGCAGGGCTATTTCCTCACT-GGCTCCCTTTAAAAGAGATAACAGAAGCA  49
      |||| ||||||   |||||| |||||||||  ||||||||||||||||  
seq2  CGCA-GGCTAT---CTCACTGGGCTCCCTT--AAAGAGATAACAGAAGGC  44

seq1  ATCCTGT-GCAATGTTTAACTCCATGCAAGACCACAAATGTTCGCACTGC  98
      ||||||| |||||| |||||| ||||||||| ||| ||||||||||||||
seq2  ATCCTGTGGCAATG-TTAACT-CATGCAAGA-CAC-AATGTTCGCACTGC  90

seq1  TTTAATTATGTTCTAATGCTTAGAATCTAACAAGAATAAACTGGAAATAA  148
      ||||  ||||||||| |||||||||||||   || |||||||||||||||
seq2  TTTA--TATGTTCTATTGCTTAGAATCTA--CAGGATAAACTGGAAATAA  136

seq1  GTGAAAGAACTATTGATGAAT-GTGTCAGAATGGATTTAATGTTGTAGAA  197
      ||||||||||||||||||||| |||||||||||||||||||| ||||| |
seq2  GTGAAAGAACTATTGATGAATGGTGTCAGAATGGATTTAATG-TGTAG-A  184

seq1  AATTCAAGTAACTTACAAAGGGATTGGTTCAGAATTGCTAGCTATGTTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGTAACTTACAAAGGGATTGGTTCAGAATTGCTAGCTATGTTTC  234

seq1  AAGTTCATGATTGGACTCTGATATATTAGGCAGGAAGTGGCTAGAACTAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCATGATTGGACTCTGATATATTAGGCAGGAAGTGGCTAGAACTAA  284

seq1  CTAAATGATGGACTTGAACCTTCAAGCC-TTCCTTTATCTATGTTTGTTT  346
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAAATGATGGACTTGAACCTTCAAGCCTTTCCTTTATCTATGTTTGTTT  334

seq1  GTTTGTTTGTTTGTTTATTCATTTATTTATTGTGTGTGTGTGTCTGTTAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTTGTTTATTCATTTATTTATTGTGTGTGTGTGTCTGTTAA  384

seq1  GCAGTTTCCAGTATGCCAGAATGGCTTTGAACTTGTTATATGAGAATGAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTCCAGTATGCCAGAATGGCTTTGAACTTGTTATATGAGAATGAC  434

seq1  CTTGGACATTTGATCTTCCTGCCTCCACCTCACACATGAGAGATGGCAAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACATTTGATCTTCCTGCCTCCACCTCACACATGAGAGATGGCAAG  484

seq1  CATGTGCCACCACTCTTGACTTGTAGGCTTCTGGGAATGAAATTCAGGAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCACCACTCTTGACTTGTAGGCTTCTGGGAATGAAATTCAGGAC  534

seq1  CTCGTGTATACTCACTGACACTGTCAACTGAACCTCAGCCCCACTATTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTATACTCACTGACACTGTCAACTGAACCTCAGCCCCACTATTCA  584

seq1  GAGACTTCACATCTAATTACAGGAATAAGAGAACAATTGTATTACAAACT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTCACATCTAATTACAGGAATAAGAGAACAATTGTATTACAAACT  634

seq1  TCTGCCTAGCAATTTCCTCTACACTTTGTAATGTATTTGTAATTTATGAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTAGCAATTTCCTCTACACTTTGTAATGTATTTGTAATTTATGAA  684

seq1  TTTCCCCTGTATCCACATGTACGTTTGTGTGTATGTACACATGTCTGTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCTGTATCCACATGTACGTTTGTGTGTATGTACACATGTCTGTGA  734

seq1  GGCAATTTCCTTTATAATTTTGATCTCTCCTCTTCCACTTCCTTTATAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTTCCTTTATAATTTTGATCTCTCCTCTTCCACTTCCTTTATAAA  784

seq1  GGTCACCACCTATAACATTGTAGCTTTCATTAGAATGACTTTATGAAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCACCTATAACATTGTAGCTTTCATTAGAATGACTTTATGAAAAA  834

seq1  TACTTGAATTATTATAAATTATTATATCTCCCTCACATAATATATCTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAATTATTATAAATTATTATATCTCCCTCACATAATATATCTGTG  884

seq1  TCAACAAGCAGACAAGTGTTTTCTCCACTTGCGATCGGATAGTTATCTGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGCAGACAAGTGTTTTCTCCACTTGCGATCGGATAGTTATCTGA  934

seq1  ATGAAGGGAAGATTTCCTGAAAAGATTAACTAAGGGGGAAGATCCTTCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGGAAGATTTCCTGAAAAGATTAACTAAGGGGGAAGATCCTTCAC  984

seq1  TAAATTGGTCAGCCTATCTCAGTGGTGGCCCAGAAAACAGAAGTCTGAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGGTCAGCCTATCTCAGTGGTGGCCCAGAAAACAGAAGTCTGAGG  1034

seq1  AAGAAAAGGAACTGCTCGCTGACCAGACTGTACTTCCTGCAAGTGAGAGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGAACTGCTCGCTGACCAGACTGTACTTCCTGCAAGTGAGAGT  1084

seq1  ATTTATCATTGCTGCTGCAATCACTCCAACCATGCCTTTCACTGACCTCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCATTGCTGCTGCAATCACTCCAACCATGCCTTTCACTGACCTCA  1134

seq1  GTATCCAGCTTTTTGGCCTTCCAACAAGGGTTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGCTTTTTGGCCTTCCAACAAGGGTTGAATTC  1172