BAC Information

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BAC

Clone NameB6Ng01-347H10
Chromosome1 (Build37)
Map Location 50,816,312 - 50,888,367
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666962, EG666970, LOC100041993
Downstream geneTmeff2, Sdpr, LOC383504, Obfc2a, Myo1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347H10.bB6Ng01-347H10.g
ACCGA129057GA129058
length1,2031,207
definitionB6Ng01-347H10.b B6Ng01-347H10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,887,184 - 50,888,367)(50,816,312 - 50,817,893)
sequence
gaattctataatgcaaattcttccaggatttatgagggttttttttttcc
ctgagtatgatttcctagtggaacatgagcatcctgagacctttatgatt
ctctaatctggccctactcttattattcaagttcctttctactttcaata
cttaaatctcaccagcctaaattctgtaaaaatgctattgaacctgctat
ttttttctagtcggtcatacaatgctagcaaattacatacaccataacac
ggaatattcaaggaaattatactttagataggataatgtttctcattaga
gttatcctatctttcttatgtacagagggccagggttggagcccattctt
atctgcatctaatgagcctgtgcttcgttaaaggctacattgactttggg
tcccaattccagagcaatggtacactgtcatgcttccatgtccttgtttg
cagtgacaccctgcctttaactgcccaatgctgggtttgatgttttctac
tgtctaagtcaaatcaccgtcagaacccttcccattgctacattttatgt
ggttcttacttgtttatatctaaataaaatcaactatgactttttatgag
attctcaagtagtctttaacttacaagagtttgagtggttgcacattaat
ataagtcctttaatggcaaaacattcagatttaagctcttgtccttgaat
ctttgtgatcaggtgagcatatagaaataggcatgggtttaatttcaatt
gattgacttttattgaacacaagcctacactagaacatgttttacattcc
ccatttcatttgtttgtgttattgtgttgcatctgaagaaagaataattt
catttatttctagttgattagaaggatattctgccctgctttcagggtct
catgctaactcttaaagaagcttgtttccacagaatgagtcagagattaa
caaatcgttattccaaaccctatggtgtgcatcctattgcatatgatgtt
gttgtgcatgagatggtgtccagaaggtaggagatattctcttcaggcac
tgtaatatggttgatcactagccacagacacggacaggaatggttttttt
gcccaactggccaggttctgggtttggcgaggtgtggtggaaatgatgaa
gatgcccattattaacttggtttggatgtcaatggccgtagtgactgtga
tgg

gaattccacagtttttgactccacccacattgctctgagatatcccatcc
cattgactcctccccagaaacttggttcatagatatcaagtcatggcact
ataaaaggagtcttgaaatgcacaaaatgaaaggcataggtaagatcagc
atctataacaatgaaaactttaaaatgataaccataaaattccaattatt
acctgatgcagagagcttagtacttctgaagaagaatggcaggagattag
tgtttcagagaagcaaagggtgtaccatgactggttagatttaggacatg
ttctactgtcttgagatggtccgaatatatatccatgagtttttcctcat
tctggcattatctattaactaacattgaactccttccagcttttcatggt
ctggttttagttgatttttataaatgcttcctcatttctgtacctattga
tatcctatttttatgcataacaactgggctaacaaattgattttttccaa
acttaatctaagtttacataaaatagaaatatgttttaggtattgtcttt
atgattaatgcatttgtactgagcatacaagttatatattcattaatgct
ttgaatgaaatataagttttaaaaaattcagttatgaaaacaatgcataa
cttttcaaaatttttatactcataaaatttattgattctctgctttaaag
ccttctacacggcttttgtatgcacataaattcacttaagttgaaatctt
ctttttagccaaacaattcagttgtatttgaactaaatatctaatcatat
ataacttaaaatcattgtcaaacagagtatatttgaaagaactgatgttt
gagctgaatttattggtaataacagtgattgtaatatagtttaatacaaa
taacatgaaaataacgggaagttaatatagatcatggaattccagatata
caaggcagccatctaattaaaaactaaatttaaattcacaaatatttata
tttagtttcaatattcaacaccttttcatatacaggaaattacatttatc
agtcaaatgcaataagaaattcacacttcctctcattctatttagaattt
atggatagagattctaaatagggaaccatgcagtccatttggaatgctca
caattaagcttagctagctactgacaaatctctggatcagtcactggcta
gtttaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_50887184_50888367
seq2: B6Ng01-347H10.b_51_1253 (reverse)

seq1  CCATCACATGTCA-TACGG-CATTGACATC--AAACAAGATTATAAT-GG  45
      |||||||| |||| ||||| ||||||||||  || |||| | ||||| ||
seq2  CCATCACA-GTCACTACGGCCATTGACATCCAAACCAAGTTAATAATGGG  49

seq1  CATC-TCATCATTTC--ACACACATCGC--AAACCAGAAACTGG-CAGTT  89
      |||| ||||||||||   ||||| ||||  || |||||| |||| |||||
seq2  CATCTTCATCATTTCCACCACACCTCGCCAAACCCAGAACCTGGCCAGTT  99

seq1  GGGCAAAAAA--CATTTCCTTGTCCGTGTCTGTGGCTAGTGATCAA-CAT  136
      ||||||||||  ||||  | |||||||||||||||||||||||||| |||
seq2  GGGCAAAAAAACCATT--CCTGTCCGTGTCTGTGGCTAGTGATCAACCAT  147

seq1  ATTACAGTGCCTG-AGAG-ATATCTCCTA-CTTCTGGACACATTCTCATG  183
      ||||||||||||| |||| |||||||||| |||||||||||  |||||||
seq2  ATTACAGTGCCTGAAGAGAATATCTCCTACCTTCTGGACACCATCTCATG  197

seq1  CACA--CACATCATATGC-ATAGGATGCACA-CATAGGGTTTGGGATAAC  229
      ||||   ||||||||||| |||||||||||| |||||||||||| |||||
seq2  CACAACAACATCATATGCAATAGGATGCACACCATAGGGTTTGGAATAAC  247

seq1  GATTTGTTAATCTCTGACTCATTCTGTGGAAACAAGCTTCTTTAAGAGTT  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTAATCTCTGACTCATTCTGTGGAAACAAGCTTCTTTAAGAGTT  297

seq1  AGCATGAGACCCTGAAAGCAGGGCAGAATAT-CTTCTAATCAACTAGAAA  328
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCATGAGACCCTGAAAGCAGGGCAGAATATCCTTCTAATCAACTAGAAA  347

seq1  TAAATGAAATTATTCTTTCTTCAGATGCAACACAATAACACAAACAAATG  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAATTATTCTTTCTTCAGATGCAACACAATAACACAAACAAATG  397

seq1  AAATGGGGAATGTAAAACATGTTCTAGTGTAGGCTTGTGTTCAATAAAAG  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGGAATGTAAAACATGTTCTAGTGTAGGCTTGTGTTCAATAAAAG  447

seq1  TCAATCAATTGAAATTAAACCCATGCCTATTTCTATATGCTCACCTGATC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAATTGAAATTAAACCCATGCCTATTTCTATATGCTCACCTGATC  497

seq1  ACAAAGATTCAAGGACAAGAGCTTAAATCTGAATGTTTTGCCATTAAAGG  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGATTCAAGGACAAGAGCTTAAATCTGAATGTTTTGCCATTAAAGG  547

seq1  ACTTATATTAATGTGCAACCACTCAAACTCTTGTAAGTTAAAGACTACTT  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATATTAATGTGCAACCACTCAAACTCTTGTAAGTTAAAGACTACTT  597

seq1  GAGAATCTCATAAAAAGTCATAGTTGATTTTATTTAGATATAAACAAGTA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTCATAAAAAGTCATAGTTGATTTTATTTAGATATAAACAAGTA  647

seq1  AGAACCACATAAAATGTAGCAATGGGAAGGGTTCTGACGGTGATTTGACT  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACATAAAATGTAGCAATGGGAAGGGTTCTGACGGTGATTTGACT  697

seq1  TAGACAGTAGAAAACATCAAACCCAGCATTGGGCAGTTAAAGGCAGGGTG  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTAGAAAACATCAAACCCAGCATTGGGCAGTTAAAGGCAGGGTG  747

seq1  TCACTGCAAACAAGGACATGGAAGCATGACAGTGTACCATTGCTCTGGAA  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAAACAAGGACATGGAAGCATGACAGTGTACCATTGCTCTGGAA  797

seq1  TTGGGACCCAAAGTCAATGTAGCCTTTAACGAAGCACAGGCTCATTAGAT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACCCAAAGTCAATGTAGCCTTTAACGAAGCACAGGCTCATTAGAT  847

seq1  GCAGATAAGAATGGGCTCCAACCCTGGCCCTCTGTACATAAGAAAGATAG  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATAAGAATGGGCTCCAACCCTGGCCCTCTGTACATAAGAAAGATAG  897

seq1  GATAACTCTAATGAGAAACATTATCCTATCTAAAGTATAATTTCCTTGAA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTCTAATGAGAAACATTATCCTATCTAAAGTATAATTTCCTTGAA  947

seq1  TATTCCGTGTTATGGTGTATGTAATTTGCTAGCATTGTATGACCGACTAG  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCGTGTTATGGTGTATGTAATTTGCTAGCATTGTATGACCGACTAG  997

seq1  AAAAAAATAGCAGGTTCAATAGCATTTTTACAGAATTTAGGCTGGTGAGA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAGCAGGTTCAATAGCATTTTTACAGAATTTAGGCTGGTGAGA  1047

seq1  TTTAAGTATTGAAAGTAGAAAGGAACTTGAATAATAAGAGTAGGGCCAGA  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTATTGAAAGTAGAAAGGAACTTGAATAATAAGAGTAGGGCCAGA  1097

seq1  TTAGAGAATCATAAAGGTCTCAGGATGCTCATGTTCCACTAGGAAATCAT  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAATCATAAAGGTCTCAGGATGCTCATGTTCCACTAGGAAATCAT  1147

seq1  ACTCAGGGAAAAAAAAAACCCTCATAAATCCTGGAAGAATTTGCATTATA  1178
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGGAAAAAAAAAACCCTCATAAATCCTGGAAGAATTTGCATTATA  1197

seq1  GAATTC  1184
      ||||||
seq2  GAATTC  1203


seq1: chr1_50816312_50817893
seq2: B6Ng01-347H10.g_68_1274

seq1  GAATTCCACAGTTTTTGACTCCACCCACATTGCTCTGAGATATCCCATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGTTTTTGACTCCACCCACATTGCTCTGAGATATCCCATCC  50

seq1  CATTGACTCCTCCCCAGAAACTTGGTTCATAGATATCAAGTCATGGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACTCCTCCCCAGAAACTTGGTTCATAGATATCAAGTCATGGCACT  100

seq1  ATAAAAGGAGTCTTGAAATGCACAAAATGAAAGGCATAGGTAAGATCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGAGTCTTGAAATGCACAAAATGAAAGGCATAGGTAAGATCAGC  150

seq1  ATCTATAACAATGAAAACTTTAAAATGATAACCATAAAATTCCAATTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAACAATGAAAACTTTAAAATGATAACCATAAAATTCCAATTATT  200

seq1  ACCTGATGCAGAGAGCTTAGTACTTCTGAAGAAGAATGGCAGGAGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATGCAGAGAGCTTAGTACTTCTGAAGAAGAATGGCAGGAGATTAG  250

seq1  TGTTTCAGAGAAGCAAAGGGTGTACCATGACTGGTTAGATTTAGGACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGAGAAGCAAAGGGTGTACCATGACTGGTTAGATTTAGGACATG  300

seq1  TTCTACTGTCTTGAGATGGTCCGAATATATATCCATGAGTTTTTCCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTGTCTTGAGATGGTCCGAATATATATCCATGAGTTTTTCCTCAT  350

seq1  TCTGGCATTATCTATTAACTAACATTGAACTCCTTCCAGCTTTTCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCATTATCTATTAACTAACATTGAACTCCTTCCAGCTTTTCATGGT  400

seq1  CTGGTTTTAGTTGATTTTTATAAATGCTTCCTCATTTCTGTACCTATTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTAGTTGATTTTTATAAATGCTTCCTCATTTCTGTACCTATTGA  450

seq1  TATCCTATTTTTATGCATAACAACTGGGCTAACAAATTGATTTTTTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTATTTTTATGCATAACAACTGGGCTAACAAATTGATTTTTTCCAA  500

seq1  ACTTAATCTAAGTTTACATAAAATAGAAATATGTTTTAGGTATTGTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATCTAAGTTTACATAAAATAGAAATATGTTTTAGGTATTGTCTTT  550

seq1  ATGATTAATGCATTTGTACTGAGCATACAAGTTATATATTCATTAATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTAATGCATTTGTACTGAGCATACAAGTTATATATTCATTAATGCT  600

seq1  TTGAATGAAATATAAGTTTTAAAAAATTCAGTTATGAAAACAATGCATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAAATATAAGTTTTAAAAAATTCAGTTATGAAAACAATGCATAA  650

seq1  CTTTTCAAAATTTTTATACTCATAAAATTTATTGATTCTCTGCTTTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAATTTTTATACTCATAAAATTTATTGATTCTCTGCTTTAAAG  700

seq1  CCTTCTACACGGCTTTTGTATGCACATAAATTCACTTAAGTTGAAATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTACACGGCTTTTGTATGCACATAAATTCACTTAAGTTGAAATCTT  750

seq1  CTTTTTAGCCAAACAATTCAGTTGTATTTGAACTAAATATCTAATCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTAGCCAAACAATTCAGTTGTATTTGAACTAAATATCTAATCATAT  800

seq1  ATAACTTAAAATCATTGTCAAACAGAGTATATTTGAAAGAACTGATGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAAAATCATTGTCAAACAGAGTATATTTGAAAGAACTGATGTTT  850

seq1  GAGCTGAATTTATTGGTAATAACAGTGATTGTAATATAGTTTAATACAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAATTTATTGGTAATAACAGTGATTGTAATATAGTTTAATACAAA  900

seq1  TAACATGAAAATAACGGGAAGTTAATATAGATCATGGAATTCCAGATATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGAAAATAACGGGAAGTTAATATAGATCATGGAATTCCAGATATA  950

seq1  CAAGGCAGCCATCTAATTAAAAACTAAATTTAAATTCACAAATATTTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGCCATCTAATTAAAAACTAAATTTAAATTCACAAATATTTATA  1000

seq1  TTTAAGTTTCAATATTCAAACACCTTTTTCATATACCAGGAAATTACATT  1050
      ||| ||||||||||||| |||||| |||||||||| ||||||||||||||
seq2  TTT-AGTTTCAATATTC-AACACC-TTTTCATATA-CAGGAAATTACATT  1046

seq1  TATCAGTCAAAATGCAATAAGAAAATCACACTTCTCTTCATTCTATTTAG  1100
      |||||||| ||||||||||||||| |||||||||   |||||||||||||
seq2  TATCAGTC-AAATGCAATAAGAAATTCACACTTCCTCTCATTCTATTTAG  1095

seq1  AATTTATGGTATAAGGAGGATTCTAAATAGGGAACACATGCAGTCACATT  1150
      ||||||||| |||  || ||||||||||||||||| ||||||||| ||||
seq2  AATTTATGG-ATA--GA-GATTCTAAATAGGGAAC-CATGCAGTC-CATT  1139

seq1  TTGAGATGGTCTCACATTATAGCTTAGCCTAGCCTTAAACCCCTGACAAT  1200
      | || |||  |||||| |  ||||||| |||||  ||     ||||||| 
seq2  TGGA-ATG--CTCACAATTAAGCTTAG-CTAGC--TA-----CTGACAAA  1178

seq1  ACTCCTGAGTCAGTTTCACTGGGGCTAGGTTTATAAGCATGAGCTCCTAT  1250
       || |||  ||||  |||||  ||||||   | ||||             
seq2  TCT-CTGGATCAG--TCACT--GGCTAG---TTTAAG-------------  1207

seq1  ACCCATCTTTTATTTCAAGAAACTTTTCTCACTTTGAAAGTTGCTTTTGG  1300
                                                        
seq2  --------------------------------------------------  1207

seq1  AATTATGGAAAGACAAGGTAAGACACATAACAAAGCAGAGCAGAAACACC  1350
                                                        
seq2  --------------------------------------------------  1207

seq1  ACAGTGTAATTTCTCCTCTGTGCATGTCTCAGACACCTTCCCTTCTTTCT  1400
                                                        
seq2  --------------------------------------------------  1207

seq1  CATCTTTCATCAGTAATATTTACCACTGCTTTTGTCACTGGCAATATCTC  1450
                                                        
seq2  --------------------------------------------------  1207

seq1  ATTCTTTCTAGTTGCAATTATAAACTCATCCAGCTCACCAAGTTAGAACA  1500
                                                        
seq2  --------------------------------------------------  1207

seq1  TACATCTGTAAATTAAGCTCATTAGAGAACAGAGAAAGTAGCAGTTTTAT  1550
                                                        
seq2  --------------------------------------------------  1207

seq1  TTAAATGAGTCAGCAGAGAGCTGTAGTTTAAG  1582
                                      
seq2  --------------------------------  1207


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