BAC Information

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BAC

Clone NameB6Ng01-347I21
Chromosome1 (Build37)
Map Location 17,107,705 - 17,238,377
singlet/doubletdoublet
Overlap geneGdap1
Upstream geneRdh10, EG665282, Stau2, Ube2w, Tceb1, LOC665480, Tmem70, Ly96, LOC100040056, LOC665496, EG545306, Jph1
Downstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347I21.bB6Ng01-347I21.g
ACCGA129123GA129124
length1,0321,098
definitionB6Ng01-347I21.b B6Ng01-347I21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,237,796 - 17,238,377)(17,107,705 - 17,108,806)
sequence
gaattcagtctaggggatacagttttctgcatagcagtctgtctcacacc
caacgtttggttgatgccagcttcacttatgatcttttatctatcaaatg
ttccctaaactgacagaaaaatgcttctgttaacataatcctgtggatct
tttccatgtccaaagtgtataacttaaaattagcctgtttggatttaaat
cctcacactttggctctttcttcttaacttgacctctttcttgaataact
agttaatgccaaacccaaattaagcatatttccaagctgtaaaattcact
tccattttggagccactagctatatcttacttctcctttcaccacagtga
acaccaagtaaacacatttagaaagtggttggattcattctgctgttcat
attttgtcaaacaatttcccaattccaaccctcacaaaaagtttaatgat
aaaacctccactggaggatatgtccactcctagaaatcatcatatagcaa
acaaaaacctcagttccaggtgttggatgcctccttaggaaatgttggtc
agagaggtaccaggcccttcttcccaaaccaatacaacctattttcattc
ctctaggttgcccatcacagctagaagatgataatttagtggtgtacacc
cttgattctcacatctaggaggctgaggcaagaggttctctatgaatttg
aggatggtctggtctacccagtgaattccaggatagccagagctacacag
ttgaaaccctgtctcaggaaaaaataaagagaaggggggatatatttcta
aaagcaccattcatcttggcaaaaagttaaaaaaagaaaaaaagaaaaaa
gcaggggctgagctagagactagagacttcccccaccccttgttggctag
cttttgtagtaccagaaagtgttatacaggctactggagaaggaaggaag
ttatgtcttatccagctatgaactctaaaactacaatgccaacatctact
caaaatgtactcactgatgaataaaacatgac
gaattcaattggaaaattggaatgcaggtgtttactgtgagatatgagag
aggacaatataatatatatatatatatatatatatatatatatatatata
tatatatgctaccaggacagtttaggggggtttgggaccagttgatatag
atagaaatgtccagatttacccgtggatctggtaagggcttgaaggatga
aatgtcttaatcattcagatgtactcttgtacatctgtaagagtaacatc
aacttataaccaacaccaaatgtagtgggcctccacattctagctacaat
cctttctccattgtgcactgtttttttgcagttctagaatttcttgtaaa
ttcagctttgggccttcagagcaggtgtaccttctgtgtcttctcaacac
aattttcttcacttcattgtaagggatgttgactagaatatttgctaaca
aggaagtctcattgtatctaggggtacattggggtcacctgagttctaga
gtcaaagtatgaagaagcctggcaataaagtggtgcagtgtgagagaagg
gcagaagaaagatatccctgcatcagcagagaagtagctccatccttaac
cttctttcctaacttggaagttgagaggtggctgaatatttaccagccaa
taatgatttgtttcagagtggatggagtggatgtagctgaattacctaga
caacattgagctttctcatcacagcagaaacagacctccgtggtcaatat
cttaatgctaaacaaaatagttaagtttctacacatatgagatgcaacaa
aacagaaatatacatttgaaaagaggataaaataataataaaatcatggc
aaacaagaatatatatataatatatatatatatgcacatgcacatcacac
acacacacacacacacacacacacacacacacacaccacacacacacact
ataagagtaggccctgttataagtacttctgttaaataatctatagttta
tggactttgcagctgaaaataaatcaaatgtgctgaatagtacccatgaa
ctaaatatatttattatatatatatataatatataatattatattacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17237796_17238377
seq2: B6Ng01-347I21.b_43_624 (reverse)

seq1  TTGGTTTGGGAAGAAGGGCCTGGTACCTCTCTGACCAACATTTCCTAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGGGAAGAAGGGCCTGGTACCTCTCTGACCAACATTTCCTAAGG  50

seq1  AGGCATCCAACACCTGGAACTGAGGTTTTTGTTTGCTATATGATGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCAACACCTGGAACTGAGGTTTTTGTTTGCTATATGATGATTTC  100

seq1  TAGGAGTGGACATATCCTCCAGTGGAGGTTTTATCATTAAACTTTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGGACATATCCTCCAGTGGAGGTTTTATCATTAAACTTTTTGTG  150

seq1  AGGGTTGGAATTGGGAAATTGTTTGACAAAATATGAACAGCAGAATGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGGAATTGGGAAATTGTTTGACAAAATATGAACAGCAGAATGAAT  200

seq1  CCAACCACTTTCTAAATGTGTTTACTTGGTGTTCACTGTGGTGAAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACTTTCTAAATGTGTTTACTTGGTGTTCACTGTGGTGAAAGGAG  250

seq1  AAGTAAGATATAGCTAGTGGCTCCAAAATGGAAGTGAATTTTACAGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGATATAGCTAGTGGCTCCAAAATGGAAGTGAATTTTACAGCTTG  300

seq1  GAAATATGCTTAATTTGGGTTTGGCATTAACTAGTTATTCAAGAAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGCTTAATTTGGGTTTGGCATTAACTAGTTATTCAAGAAAGAGG  350

seq1  TCAAGTTAAGAAGAAAGAGCCAAAGTGTGAGGATTTAAATCCAAACAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTAAGAAGAAAGAGCCAAAGTGTGAGGATTTAAATCCAAACAGGC  400

seq1  TAATTTTAAGTTATACACTTTGGACATGGAAAAGATCCACAGGATTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAGTTATACACTTTGGACATGGAAAAGATCCACAGGATTATGT  450

seq1  TAACAGAAGCATTTTTCTGTCAGTTTAGGGAACATTTGATAGATAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAGCATTTTTCTGTCAGTTTAGGGAACATTTGATAGATAAAAGA  500

seq1  TCATAAGTGAAGCTGGCATCAACCAAACGTTGGGTGTGAGACAGACTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGTGAAGCTGGCATCAACCAAACGTTGGGTGTGAGACAGACTGCT  550

seq1  ATGCAGAAAACTGTATCCCCTAGACTGAATTC  582
      ||||||||||||||||||||||||||||||||
seq2  ATGCAGAAAACTGTATCCCCTAGACTGAATTC  582

seq1: chr1_17107705_17108806
seq2: B6Ng01-347I21.g_68_1165

seq1  GAATTCAATTGGAAAATTGGAATGCAGGTGTTTACTGTGAGATATGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGGAAAATTGGAATGCAGGTGTTTACTGTGAGATATGAGAG  50

seq1  AGGACAATATAATATATATATATATATATATATATATATATATATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAATATAATATATATATATATATATATATATATATATATATATATA  100

seq1  TATATATGCTACCAGGACAGTTTAGGGGGGTTTGGGACCAGTTGATATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCTACCAGGACAGTTTAGGGGGGTTTGGGACCAGTTGATATAG  150

seq1  ATAGAAATGTCCAGATTTACCCGTGGATCTGGTAAGGGCTTGAAGGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATGTCCAGATTTACCCGTGGATCTGGTAAGGGCTTGAAGGATGA  200

seq1  AATGTCTTAATCATTCAGATGTACTCTTGTACATCTGTAAGAGTAACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTAATCATTCAGATGTACTCTTGTACATCTGTAAGAGTAACATC  250

seq1  AACTTATAACCAACACCAAATGTAGTGGGCCTCCACATTCTAGCTACAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATAACCAACACCAAATGTAGTGGGCCTCCACATTCTAGCTACAAT  300

seq1  CCTTTCTCCATTGTGCACTGTTTTTTTGCAGTTCTAGAATTTCTTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTCCATTGTGCACTGTTTTTTTGCAGTTCTAGAATTTCTTGTAAA  350

seq1  TTCAGCTTTGGGCCTTCAGAGCAGGTGTACCTTCTGTGTCTTCTCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTTGGGCCTTCAGAGCAGGTGTACCTTCTGTGTCTTCTCAACAC  400

seq1  AATTTTCTTCACTTCATTGTAAGGGATGTTGACTAGAATATTTGCTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTCACTTCATTGTAAGGGATGTTGACTAGAATATTTGCTAACA  450

seq1  AGGAAGTCTCATTGTATCTAGGGGTACATTGGGGTCACCTGAGTTCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCTCATTGTATCTAGGGGTACATTGGGGTCACCTGAGTTCTAGA  500

seq1  GTCAAAGTATGAAGAAGCCTGGCAATAAAGTGGTGCAGTGTGAGAGAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGTATGAAGAAGCCTGGCAATAAAGTGGTGCAGTGTGAGAGAAGG  550

seq1  GCAGAAGAAAGATATCCCTGCATCAGCAGAGAAGTAGCTCCATCCTTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAAAGATATCCCTGCATCAGCAGAGAAGTAGCTCCATCCTTAAC  600

seq1  CTTCTTTCCTAACTTGGAAGTTGAGAGGTGGCTGAATATTTACCAGCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCCTAACTTGGAAGTTGAGAGGTGGCTGAATATTTACCAGCCAA  650

seq1  TAATGATTTGTTTCAGAGTGGATGGAGTGGATGTAGCTGAATTACCTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTGTTTCAGAGTGGATGGAGTGGATGTAGCTGAATTACCTAGA  700

seq1  CAACATTGAGCTTTCTCATCACAGCAGAAACAGACCTCCGTGGTCAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTGAGCTTTCTCATCACAGCAGAAACAGACCTCCGTGGTCAATAT  750

seq1  CTTAATGCTAAACAAAATAGTTAAGTTTCTACACATATGAGATGCAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGCTAAACAAAATAGTTAAGTTTCTACACATATGAGATGCAACAA  800

seq1  AACAGAAATATACATTTGAAAAGAGGATAAAATAATAATAAAATCATGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAATATACATTTGAAAAGAGGATAAAATAATAATAAAATCATGGC  850

seq1  AAACAAGAATATATATATAATATATATATATATGCACATGCACA-CACAC  899
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACAAGAATATATATATAATATATATATATATGCACATGCACATCACAC  900

seq1  ACACACACACACACACACACACACACACACACACACCACACACACACACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACCACACACACACACT  950

seq1  ATAAGAGTAGGCCCTGTTATTAAGTACTTCTGTTTAAATAATTCTATAGT  999
      ||||||||||||||||||| |||||||||||| |||||||| ||||||||
seq2  ATAAGAGTAGGCCCTGTTA-TAAGTACTTCTG-TTAAATAA-TCTATAGT  997

seq1  TTATGGACTTTGCAGCTGAGAATTAATCAAATTGTTGCTG-ATAGTACAC  1048
      ||||||||||||||||||| ||| ||||||||   ||||| ||||||| |
seq2  TTATGGACTTTGCAGCTGAAAATAAATCAAAT--GTGCTGAATAGTACCC  1045

seq1  ATTGAACTATATATATATATATATATATATATATATATATAT-ATA-TAT  1096
      | ||||||| |||||| ||| |||||||||||||| |||||| ||| |||
seq2  A-TGAACTAAATATATTTAT-TATATATATATATA-ATATATAATATTAT  1092

seq1  ATTACC  1102
      ||||||
seq2  ATTACC  1098