BAC Information

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BAC

Clone NameB6Ng01-347O03
Chromosome1 (Build37)
Map Location 82,715,165 - 82,826,258
singlet/doubletdoublet
Overlap geneCol4a3, 5230400G24Rik, Tm4sf20, LOC100039491
Upstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4
Downstream geneHrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347O03.bB6Ng01-347O03.g
ACCGA129349GA129350
length1,1911,116
definitionB6Ng01-347O03.b B6Ng01-347O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,715,165 - 82,716,362)(82,825,135 - 82,826,258)
sequence
gaattctgatgaaacacactgaaaatgtaaaataccaataaatgtttata
tatacaaacataaaattgtctttctagaaattctcctcttctacaaggag
gggtgtttctggaataaagtcatctacaatgtttatttaaaaatcccaaa
gcaagtaagtattctattttatccacaatcaatgagtcctttcatttgta
tttatttcagaaaacctattccatcaactgtgaaagctggagacttagag
aaaatcataagccgctgtcaggtgtgcatgaagaaaagacattgacgaaa
tcaaagaaaccagaaccgttttttttttttttttttttttttttgttcct
tcttaagtaacaaagtcatgacttagaacatgaatttacttaggtctttc
tctctaaccttaaagatgtagtagtgcaaagtttcactacacaagaaagc
atttcattcgttagtctgtgatgtgggtctctaaacctgtaggtttcaaa
gttccctgtggaaaggcaacagcttgccacagaatatcgctgaaatcaca
ttccagttgtacccaaagagctgactaaatgttgattgtgtggaacttga
actacaagctaagagaggtctgtcctgtggatgcacggtgtgttccttgt
ctcccactcctgagcaaaggagtgcggttccttccatctcctccctgaca
ccttagacttcaactacagaaggagaagggagtataccatcaagcacacc
gtgaagagaactggagggtcagagctgctgagtggtgtaagggctagaac
acagaataaatgaggccccatgatgtttcagactcatttaaatatgcaca
aggctaggaccaaagaaacttcctgaagcgaatcataacaggcttgtata
taaagtggtaggtttgttttctgttttgttgacgatgtctatttgcttat
tcactgaagctcttttactatgtcaataagattcaaagctggttaaacgt
ttacccttggggaactaggttttactaggatggcatacacattacattgg
aacatttctctttattggtttccaggtacaaggacactgcttactaaatg
tgcacttatcccacctcctatacaacgggcggactaataatttcacaggg
ataatacaaggttacgagcgcaacttttttctttggtctaa
gaattccagcagttaggcagtatgacttttgatacaactttgggtgaact
gaacatcaagtacctctcctgcgccatcagatgagatgggatgggatttg
ttcagaactacagacctggcaccccaataattatgcctgacgttttctgc
tactaggcaccttctgtagagtggcccccattaatctttggctgtaagga
ctaatccttacagcagcctttgtaggtagatcgtattgttatgaccactt
tgcacatgaagaactaaggctccagatgacctgaccactgtgccttgatc
ctaaggctatgaagccagggagctggggttagaagaaaggtggttctttt
tagaggtcatgatttaaccaattgaaccagatgttcaatctggcaggatc
taaaaccgcctaagggacaagcctcggggcgtgtctatgaagtattttct
acgttttgatcattggtgtgggagtagtcacccaaaagtgggcagcgagt
gtcattctatgggctgagatcccagacagagcaaaaagagacaagtgatc
tgagtttaagcatgtttctctctctctctttgcttcccagttatggatac
aactgccctctgctcctgccgcctacctcctgcactgtgatgggtggcac
tttcaaacctcagccaaaataaaccctcctctaaagctactttccccagg
tactctgtgacggccacaagaaaaataagtctacagtccatctgatctct
attgtaacctctttcttggaagtccaaccctgttctgtgtcaaaccagga
aaaggatggtggccaaggtccacgtaagtgtccttcttcccagttcaatc
tggggacaagactgacctgagtgatttgacctgaagcctcctgaaggatg
ctgctgcctttgtgtgctagccagaagactctcacacgaaagtattcaaa
tcaaggaaatcacctgaaatacacacacatacacacacatacacacacac
acacacactcagccccagggggaaaatgccctaaatatctacactgatat
tgctttgctcagtctgtcactggtactggcctgagagatcagagtgaata
gttacacacatgagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_82715165_82716362
seq2: B6Ng01-347O03.b_50_1240

seq1  GAATTCTGATGAAACACACTGAAAATGTAAAATACCAATAAATGTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATGAAACACACTGAAAATGTAAAATACCAATAAATGTTTATA  50

seq1  TATACAAACATAAAATTGTCTTTCTAGAAATTCTCCTCTTCTACAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAACATAAAATTGTCTTTCTAGAAATTCTCCTCTTCTACAAGGAG  100

seq1  GGGTGTTTCTGGAATAAAGTCATCTACAATGTTTATTTAAAAATCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTCTGGAATAAAGTCATCTACAATGTTTATTTAAAAATCCCAAA  150

seq1  GCAAGTAAGTATTCTATTTTATCCACAATCAATGAGTCCTTTCATTTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAAGTATTCTATTTTATCCACAATCAATGAGTCCTTTCATTTGTA  200

seq1  TTTATTTCAGAAAACCTATTCCATCAACTGTGAAAGCTGGAGACTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCAGAAAACCTATTCCATCAACTGTGAAAGCTGGAGACTTAGAG  250

seq1  AAAATCATAAGCCGCTGTCAGGTGTGCATGAAGAAAAGACATTGACGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATAAGCCGCTGTCAGGTGTGCATGAAGAAAAGACATTGACGAAA  300

seq1  TCAAAGAAACCAGAACCGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAACCAGAACCGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCCT  350

seq1  TCTTAAGTAACAAAGTCATGACTTAGAACATGAATTTACTTAGGTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGTAACAAAGTCATGACTTAGAACATGAATTTACTTAGGTCTTTC  400

seq1  TCTCTAACCTTAAAGATGTAGTAGTGCAAAGTTTCACTACACAAGAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACCTTAAAGATGTAGTAGTGCAAAGTTTCACTACACAAGAAAGC  450

seq1  ATTTCATTCGTTAGTCTGTGATGTGGGTCTCTAAACCTGTAGGTTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTCGTTAGTCTGTGATGTGGGTCTCTAAACCTGTAGGTTTCAAA  500

seq1  GTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTGTGGAAAGGCAACAGCTTGCCACAGAATATCGCTGAAATCACA  550

seq1  TTCCAGTTGTACCCAAAGAGCTGACTAAATGTTGATTGTGTGGAACTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTGTACCCAAAGAGCTGACTAAATGTTGATTGTGTGGAACTTGA  600

seq1  ACTACAAGCTAAGAGAGGTCTGTCCTGTGGATGCACGGTGTGTTCCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAGCTAAGAGAGGTCTGTCCTGTGGATGCACGGTGTGTTCCTTGT  650

seq1  CTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCATCTCCTCCCTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTCCTGAGCAAAGGAGTGCGGTTCCTTCCATCTCCTCCCTGACA  700

seq1  CCTTAGACTTCAACTACAGAAGGAGAAGGGAGTATACCATCAAGCACACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGACTTCAACTACAGAAGGAGAAGGGAGTATACCATCAAGCACACC  750

seq1  GTGAAGAGAACTGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAGAACTGGAGGGTCAGAGCTGCTGAGTGGTGTAAGGGCTAGAAC  800

seq1  ACAGAATAAATGAGGCCCCATGATGTTTCAGGACTCATTTAAATATGCAC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACAGAATAAATGAGGCCCCATGATGTTTCA-GACTCATTTAAATATGCAC  849

seq1  AAGGCTAGGACCAAAGGAAACTTCCTGAAGCGAATCATAACAGGCTTGTA  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGGACCAAA-GAAACTTCCTGAAGCGAATCATAACAGGCTTGTA  898

seq1  TATAAAGT-GTAGTTTTGTTTTCTGTTTTGTTGACGATGTCTATTTGCTT  949
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTGGTAGGTTTGTTTTCTGTTTTGTTGACGATGTCTATTTGCTT  948

seq1  ATTCACTG-AGCTCTTTTTACTATGTCAAT-AGATTCAAAGCTGGTAAAA  997
      |||||||| ||||| ||||||||||||||| ||||||||||||||| |||
seq2  ATTCACTGAAGCTC-TTTTACTATGTCAATAAGATTCAAAGCTGGTTAAA  997

seq1  CGTTTACCCTTGGGGAACTAGGTTTTACTAGGATGGCATACACA-TACAT  1046
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CGTTTACCCTTGGGGAACTAGGTTTTACTAGGATGGCATACACATTACAT  1047

seq1  TGAAACATTTCTCTTTATTGTTTTCACAAGTAACAAGGACACTGCTTACT  1096
      || ||||||||||||||||| |||| || || ||||||||||||||||||
seq2  TGGAACATTTCTCTTTATTGGTTTC-CAGGT-ACAAGGACACTGCTTACT  1095

seq1  AAATGTGCACTTTATCCCCACTCCTAT-CAAC--GCCGACCTTAAATAAT  1143
      |||||||||| |||||||  ||||||| ||||  || |||    ||||||
seq2  AAATGTGCAC-TTATCCCACCTCCTATACAACGGGCGGAC---TAATAAT  1141

seq1  TTCACCAGGAAATAAT-CAGGTTTATCCGA-CGCAAACATTTTTTTCTTT  1191
      |||||  ||  ||||| || | |||  ||| ||||   | ||||||||||
seq2  TTCACAGGG--ATAATACAAGGTTA--CGAGCGCA---ACTTTTTTCTTT  1184

seq1  GCTCTAA  1198
      | |||||
seq2  GGTCTAA  1191

seq1: chr1_82825135_82826258
seq2: B6Ng01-347O03.g_68_1183 (reverse)

seq1  ATCTCATGTGTGTACCTATTTCACTCTGATCTCTCAGCACAGTACCAGTG  50
      |||||||||||||| ||| ||||||||||||||||||  |||||||||||
seq2  ATCTCATGTGTGTAACTA-TTCACTCTGATCTCTCAGGCCAGTACCAGTG  49

seq1  ACAGACCTGAGCAAAGCAATTATCAGTGTAGATATTTAGGGCATTTTCCC  100
      ||||| ||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAGA-CTGAGCAAAGCAA-TATCAGTGTAGATATTTAGGGCATTTTCCC  97

seq1  CCTTGGGGGCTGAGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGTG  150
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCT--GGGGCTGAGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGTG  145

seq1  TATTTCAGGTGATTTCCTTGATTTGAATAACTTTTCGTGTGAAGAGTCTT  200
      |||||||||||||||||||||||||||||   ||||||||| ||||||||
seq2  TATTTCAGGTGATTTCCTTGATTTGAATA--CTTTCGTGTG-AGAGTCTT  192

seq1  CTGGCTAGCACACAAAGGCAGCAGCATCCTTCAGGAGGCTTCAGGTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGCACACAAAGGCAGCAGCATCCTTCAGGAGGCTTCAGGTCAAA  242

seq1  TCACTCAGGTCAGTCTTGTCCCCAGATTGAACTGGGAAGAAGGACACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGGTCAGTCTTGTCCCCAGATTGAACTGGGAAGAAGGACACTTA  292

seq1  CGTGGACCTTGGCCACCATCCTTTTCCTGGTTTGACACAGAACAGGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGACCTTGGCCACCATCCTTTTCCTGGTTTGACACAGAACAGGGTTG  342

seq1  GACTTCCAAGAAAGAGGTTACAATAGAGATCAGATGGACTGTAGACTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAAGAAAGAGGTTACAATAGAGATCAGATGGACTGTAGACTTAT  392

seq1  TTTTCTTGTGGCCGTCACAGAGTACCTGGGGAAAGTAGCTTTAGAGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTGGCCGTCACAGAGTACCTGGGGAAAGTAGCTTTAGAGGAGG  442

seq1  GTTTATTTTGGCTGAGGTTTGAAAGTGCCACCCATCACAGTGCAGGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTTGGCTGAGGTTTGAAAGTGCCACCCATCACAGTGCAGGAGGT  492

seq1  AGGCGGCAGGAGCAGAGGGCAGTTGTATCCATAACTGGGAAGCAAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGCAGGAGCAGAGGGCAGTTGTATCCATAACTGGGAAGCAAAGAGA  542

seq1  GAGAGAGAAACATGCTTAAACTCAGATCACTTGTCTCTTTTTGCTCTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAACATGCTTAAACTCAGATCACTTGTCTCTTTTTGCTCTGTC  592

seq1  TGGGATCTCAGCCCATAGAATGACACTCGCTGCCCACTTTTGGGTGACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTCAGCCCATAGAATGACACTCGCTGCCCACTTTTGGGTGACTA  642

seq1  CTCCCACACCAATGATCAAAACGTAGAAAATACTTCATAGACACGCCCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACACCAATGATCAAAACGTAGAAAATACTTCATAGACACGCCCCG  692

seq1  AGGCTTGTCCCTTAGGCGGTTTTAGATCCTGCCAGATTGAACATCTGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGTCCCTTAGGCGGTTTTAGATCCTGCCAGATTGAACATCTGGTT  742

seq1  CAATTGGTTAAATCATGACCTCTAAAAAGAACCACCTTTCTTCTAACCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGTTAAATCATGACCTCTAAAAAGAACCACCTTTCTTCTAACCCC  792

seq1  AGCTCCCTGGCTTCATAGCCTTAGGATCAAGGCACAGTGGTCAGGTCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCTGGCTTCATAGCCTTAGGATCAAGGCACAGTGGTCAGGTCATC  842

seq1  TGGAGCCTTAGTTCTTCATGTGCAAAGTGGTCATAACAATACGATCTACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTTAGTTCTTCATGTGCAAAGTGGTCATAACAATACGATCTACC  892

seq1  TACAAAGGCTGCTGTAAGGATTAGTCCTTACAGCCAAAGATTAATGGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGGCTGCTGTAAGGATTAGTCCTTACAGCCAAAGATTAATGGGGG  942

seq1  CCACTCTACAGAAGGTGCCTAGTAGCAGAAAACGTCAGGCATAATTATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTACAGAAGGTGCCTAGTAGCAGAAAACGTCAGGCATAATTATTG  992

seq1  GGGTGCCAGGTCTGTAGTTCTGAACAAATCCCATCCCATCTCATCTGATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCAGGTCTGTAGTTCTGAACAAATCCCATCCCATCTCATCTGATG  1042

seq1  GCGCAGGAGAGGTACTTGATGTTCAGTTCACCCAAAGTTGTATCAAAAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGGAGAGGTACTTGATGTTCAGTTCACCCAAAGTTGTATCAAAAGT  1092

seq1  CATACTGCCTAACTGCTGGAATTC  1124
      ||||||||||||||||||||||||
seq2  CATACTGCCTAACTGCTGGAATTC  1116