BAC Information

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BAC

Clone NameB6Ng01-348E06
Chromosome1 (Build37)
Map Location 103,370,376 - 103,545,331
singlet/doubletdoublet
Overlap genenone
Upstream geneC230078M14Rik, LOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348E06.bB6Ng01-348E06.g
ACCGA129609GA129610
length1,0081,155
definitionB6Ng01-348E06.b B6Ng01-348E06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,544,635 - 103,545,331)(103,370,376 - 103,371,313)
sequence
gaattccaggtgcttgctgcacttgtccttctagagagagaggaagctaa
acctgtaatttattcatcaagctacatgactatttcatgtgtggtagagg
tggactttgccaaggtatgtctactatgacatgcaagcccagaacaggga
aagagtattccttactcctcctggtctcataatggaattttcaaggtttg
gacaggtcgtgacctccttcttcttccaggtccactcccctagttgcact
gttcactttgtcccacaagctagtattgataatgtaagataatactacta
ctgttaaaactccattttccaacatggtctggtgcatagaagggagctct
gtgctgggactgggaacatgattttttcagtaaaatgcttgctgtacaag
tataagggactgtcttagtcagggtttctattcctgcacaaacatcatga
ccaagaagcaagttggggaggaaaggtttattcggcttacacttccatgc
tgctgttcatcaccaaaggaagtcaggactggaactcaagcaggtcagga
agcaggagctgatgcagaggccatggagggatgttctttactagcttgcc
tcccctggcttgctcagcttgctgtcttatagaaccaagactaccagccc
agagatggtcccacccacaagaggcctttcccccttgatcactaattgag
aaaatgccttacagctggatctcatggaggcatttcctcaactgaagctc
ctttctctgtggtaactccagctgtgtcaagttgacacaaaactagccag
cacaggtactatgttcagatcctcaatacatatgtaaagattctgtcatg
gtacatgtctgtattcctgttcaggggaatgttgagggagaaggggaggg
ggtccttggggcccactatgtaagccatctattgtatactgaccattatc
ttataagtattggaaaaagaaatatataaaagatctcagttgtagtctct
aaactcca

gaattctctatgcctgccatctgttggattgttgcatgagttttgagttt
gtagtcttatgaatctgtttgtccctgtgtgtatatgtgtctaatcctat
ctgtactgtaggttatatgagatgttttgtatgtatgtgcatgctgcttg
tccatatgtatgtatatatgagtttgtccctaagaaaaaaagtttactct
atttattggacagcatagaaaatatcacatggtgaagaaatgggatactt
tatgaaagtctttcagaaatatttacaaatgattaaatcactggttccaa
ctgacgccaattgacccagacaacaaatactattttcaaacaatatccat
aaaatgctgttttcatcttttacagtagattttaagaagttgcttttaac
ttttgtatttgttgtgttcagagaagaatacaccatgcaatataaattaa
tcagaagcattggagagtgcataactttagattgcagctacatattatcc
tttgttattaaagttgattacatgagaaatctaagagaagtaagaatggt
tgttacatttttctcttaatgtcaagataagcaaggagtagaataaatgc
tgtaactgaccccaagattattactaacttttcctatgagattcttttca
ccactcccagttaccaacttcccacagaaacccctctctaagctaagcct
ggtccttggcaaatatgactgtgagtttcactatctaactattgtttagt
atttcttaaccatcttaatagtttgtaatttgtatttttatcatctttaa
cagttttcaatagcaactttaaaaaagaccagaagttcatattgcatctt
taagaattatgtcagtacaatacctcaaattaacattaaacacatgcata
tacattatctgcatcaaaaacaacatttaaatttgtgtcaatatacacta
accctataccagtgtacaaaatatcctttaattcttttattaacatacaa
aattctgagcaaatgtagcaaagtataaccttagttttgcatcagaaata
taaagaatattaccaatgtgtggattaatgaatatatatgcttttttgtt
gcttaagagtactcaggatcacctctaattgtctaaattctatgggtgat
atttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_103544635_103545331
seq2: B6Ng01-348E06.b_349_1051 (reverse)

seq1  TGGAGGTTAGAGACTACCACTG-GAGTCTTTCTATATTTC-TTCTACATT  48
      ||||| ||||||||||| |||| ||   ||| |||||||| || | || |
seq2  TGGAGTTTAGAGACTACAACTGAGATCTTTTATATATTTCTTTTTCCAAT  50

seq1  ACTTATGAGAT-ATGGTCAGTATGC-ATAGATGGC-TACATAGTGGACCC  95
      |||||| |||| ||||||||||| | ||||||||| |||||||||| |||
seq2  ACTTATAAGATAATGGTCAGTATACAATAGATGGCTTACATAGTGGGCCC  100

seq1  CAAGGACCCCCTCCCCTTCTCCCTCAACATTCCCCTGAACAGGAATACAG  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACCCCCTCCCCTTCTCCCTCAACATTCCCCTGAACAGGAATACAG  150

seq1  ACATGTACCATGACAGAATC-TTACATATGTATTGAGGATCTGAACATAG  194
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACATGTACCATGACAGAATCTTTACATATGTATTGAGGATCTGAACATAG  200

seq1  TACCTGTGCTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTACCAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGCTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTACCAC  250

seq1  AGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAGCTGTAA  300

seq1  GGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCTCTTGTGGGTGGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCTCTTGTGGGTGGGA  350

seq1  CCATCTCTGGGCTGGTAGTCTTGGTTCTATAAGACAGCAAGCTGAGCAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTGGGCTGGTAGTCTTGGTTCTATAAGACAGCAAGCTGAGCAAG  400

seq1  CCAGGGGAGGCAAGCTAGTAAAGAACATCCCTCCATGGCCTCTGCATCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAGGCAAGCTAGTAAAGAACATCCCTCCATGGCCTCTGCATCAG  450

seq1  CTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGAT  500

seq1  GAACAGCAGCATGGAAGTGTAAGCCGAATAAACCTTTCCTCCCCAACTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCAGCATGGAAGTGTAAGCCGAATAAACCTTTCCTCCCCAACTTG  550

seq1  CTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAGACAGT  600

seq1  CCCTTATACTTGTACAGCAAGCATTTTACTGAAAAAATCATGTTCCCAGT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATACTTGTACAGCAAGCATTTTACTGAAAAAATCATGTTCCCAGT  650

seq1  CCCAGCACAGAGCTCCCTTCTATGCACCAGACCATGTTGGAAAATGGAGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACAGAGCTCCCTTCTATGCACCAGACCATGTTGGAAAATGGAGT  700

seq1  TTT  697
      |||
seq2  TTT  703


seq1: chr1_103370376_103371313
seq2: B6Ng01-348E06.g_276_1218

seq1  GCATAGAAAATATCACATGGTGAAGAAATGGGATACTTTATGAAAGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAAATATCACATGGTGAAGAAATGGGATACTTTATGAAAGTCTT  50

seq1  TCAGAAATATTTACAAATGATTAAATCACTGGTTCCAACTGACGCCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATATTTACAAATGATTAAATCACTGGTTCCAACTGACGCCAATT  100

seq1  GACCCAGACAACAAATACTATTTTCAAACAATATCCATAAAATGCTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGACAACAAATACTATTTTCAAACAATATCCATAAAATGCTGTTT  150

seq1  TCATCTTTTACAGTAGATTTTAAGAAGTTGCTTTTAACTTTTGTATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTTTACAGTAGATTTTAAGAAGTTGCTTTTAACTTTTGTATTTGT  200

seq1  TGTGTTCAGAGAAGAATACACCATGCAATATAAATTAATCAGAAGCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCAGAGAAGAATACACCATGCAATATAAATTAATCAGAAGCATTG  250

seq1  GAGAGTGCATAACTTTAGATTGCAGCTACATATTATCCTTTGTTATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGCATAACTTTAGATTGCAGCTACATATTATCCTTTGTTATTAAA  300

seq1  GTTGATTACATGAGAAATCTAAGAGAAGTAAGAATGGTTGTTACATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTACATGAGAAATCTAAGAGAAGTAAGAATGGTTGTTACATTTTT  350

seq1  CTCTTAATGTCAAGATAAGCAAGGAGTAGAATAAATGCTGTAACTGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATGTCAAGATAAGCAAGGAGTAGAATAAATGCTGTAACTGACCC  400

seq1  CAAGATTATTACTAACTTTTCCTATGAGATTCTTTTCACCACTCCCAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTATTACTAACTTTTCCTATGAGATTCTTTTCACCACTCCCAGTT  450

seq1  ACCAACTTCCCACAGAAACCCCTCTCTAAGCTAAGCCTGGTCCTTGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTTCCCACAGAAACCCCTCTCTAAGCTAAGCCTGGTCCTTGGCAA  500

seq1  ATATGACTGTGAGTTTCACTATCTAACTATTGTTTAGTATTTCTTAACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTGTGAGTTTCACTATCTAACTATTGTTTAGTATTTCTTAACCA  550

seq1  TCTTAATAGTTTGTAATTTGTATTTTTATCATCTTTAACAGTTTTCAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATAGTTTGTAATTTGTATTTTTATCATCTTTAACAGTTTTCAATA  600

seq1  GCAACTTTAAAAAAGACCAGAAGTTCATATTGCATCTTTAAGAATTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTAAAAAAGACCAGAAGTTCATATTGCATCTTTAAGAATTATGT  650

seq1  CAGTACAATACCTCAAATTAACATTAAACACATGCATATACATTATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAATACCTCAAATTAACATTAAACACATGCATATACATTATCTGC  700

seq1  ATC-AAAACAACA-TTAAATTTGTGTCAATATACACTAA-CCTATACCAG  747
      ||| ||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  ATCAAAAACAACATTTAAATTTGTGTCAATATACACTAACCCTATACCAG  750

seq1  TGTACAAAAATATCC-TTAATTC-TTTATTAACATACAAAATTCTGAGCA  795
      ||||| ||||||||| ||||||| ||||||||||||||||||||||||||
seq2  TGTAC-AAAATATCCTTTAATTCTTTTATTAACATACAAAATTCTGAGCA  799

seq1  AATGTAGCAAAGTATAACCTTAGTTTTGCATCAG-AATATAAAGATATTT  844
      |||||||||||||||||||||||||||||||||| ||||||||||   ||
seq2  AATGTAGCAAAGTATAACCTTAGTTTTGCATCAGAAATATAAAGAATATT  849

seq1  ACCAATGTGT-GATT-ATGAATATATATG-TTTTTTGTTGTTTAAGAGTA  891
      |||||||||| |||| ||||||||||||| |||||||||| |||||||||
seq2  ACCAATGTGTGGATTAATGAATATATATGCTTTTTTGTTGCTTAAGAGTA  899

seq1  CTTTCAAGAATCCACCTCTATTTGTCTAATATTCTAT--GTGATATTTC  938
      |  ||| ||   |||||||| |||||||| |||||||  ||||||||||
seq2  C--TCAGGA--TCACCTCTAATTGTCTAA-ATTCTATGGGTGATATTTC  943


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