BAC Information

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BAC

Clone NameB6Ng01-348E19
Chromosome1 (Build37)
Map Location 105,323,723 - 105,324,866
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348E19.bB6Ng01-348E19.g
ACCGA129635GA129636
length1,1461,137
definitionB6Ng01-348E19.b B6Ng01-348E19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatagaatacatcaatcatattataatagtagctcgacaagagg
cctgacacctatatagtctggatttaatcattcctaaagccattgcttgg
gtgttcttggtactcaaatgtcctataaacatgtttcaactaaataaatt
agcatgcaatgttgtacctgctagtggaaagggatgttaatagaagggtg
gtacaggcaaatatgaacactcttctgttcttaaagtatgactgagtggt
gtttcatgtctctcacacagaaatattttctttaaaagacagtttatcta
aatcatttctctataccagttcttgggacttcctcaaactttctcttgct
ttcccccagtctttttcaagtcatttgatttgaaaaggtttcttgttctt
ctttctcagctctttgttctcagattctaaatagttggttcacctaaaag
ggaaaaatgtacaacacacacacacacacacacacacacacacacacaca
cacacggaataaaaaataaaagggctgttccttgaacaccaaccaggaaa
ctatatccatacctactttgtagggagacgagtatcaccactttgtgttg
gaagctctttatgtgcttcagacaaagttctaatgattacttttttctat
ttttgaatgatgttcccctcttcttattttgtacttagatactctgtgaa
agggtaagaagcatatatatgtatatatattttagtaaaacaatgaactt
tgtttgctactcctctatcatttgtaatgtttataatataaaaatttgtt
acatagatctgaacaaaacttaagtaacactgggcttttgagttaggata
gatttgatggaattgtgtcaaggaggaaaagagtatttgtggagcacaca
tatgggctgctggaagagaagagagctgaagcttccaacatgcaatgagt
atggtttcctatacacacttcctggaccctaaccacaggtgtctcttttg
aagagtcaatattacagggccttgtttgtgaaatctttacttggcttcat
aattcaccctatctgatgaacttcaagttttatgttttactaaataatag
tctagagaattctttggaattattcatcagaagtgatttatctgcc

gaattctccatggtacacctacacaatggaatactatttggctattaaaa
acaaagatatcaagaaatttgctggcaagtggatgtggcttgaaaatata
tttttgagtgaggtaacacatctgcaacacaatgtgtatggtatgtactc
atttataatctgacattagccataaagtgcaggatagccacgctataatc
cccatacctaaagaaactgggtagtaaggagggcccaaaggaggatgtat
gattcttgctcagaatgggaaacaaaatagatatcagaggtgggtggagt
gaaggcaggtgggggcagtaaggaaggaaaaggaatggctatcaggtaaa
gttgaattttctactttctttggaaatcagttatgtcaaatgatgttttt
tttttcctcccctggggcacataggtaaaaagatgtcttgttaaagcaga
cagaggaaagcatgttttcttgaagctgacataggctaaaggatgttttg
acatagcagacacatgaaaggatctggatgaaggagtataaatatgaccc
aagagacactgggaagacaagccttgatcattggtttggtttgctccatt
tcgttattatttgccgacaacaaccatgtattggctcatcttacatagtt
tttatgaagtcaacttattataaaccagacattgagagaaaattacccat
gaactgctcatgaatattttgtggcagcttgccaattctgctgcctcacc
tcaggctgcatggtgagcctagcagattcttcaggattgaactatagctg
ctggtctgttcctggtgcctaccaaaatgactggactgtgtctgccactt
catgcctggattctgattgactagagaactggtctgcagctactgagttg
tatttgggtgtttgctatgggactgaagttctatcaaagaaaaatcgagt
ttgttcacaaagaactattgcttagcaggtccacttcccgcatatcctat
aactgtttttttccactactctggtgggtggtagctagaagggagaaggt
tggacctttattaaaggtaaggtggcaaatttcagtatttaggatcatgg
acaatctcatgacggctcatagagtggaataccacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105323723_105324866
seq2: B6Ng01-348E19.b_48_1193

seq1  GAATTCCATAGAATACATCAATCATATTATAATAGTAGCTCGACAAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGAATACATCAATCATATTATAATAGTAGCTCGACAAGAGG  50

seq1  CCTGACACCTATATAGTCTGGATTTAATCATTCCTAAAGCCATTGCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACACCTATATAGTCTGGATTTAATCATTCCTAAAGCCATTGCTTGG  100

seq1  GTGTTCTTGGTACTCAAATGTCCTATAAACATGTTTCAACTAAATAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTTGGTACTCAAATGTCCTATAAACATGTTTCAACTAAATAAATT  150

seq1  AGCATGCAATGTTGTACCTGCTAGTGGAAAGGGATGTTAATAGAAGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCAATGTTGTACCTGCTAGTGGAAAGGGATGTTAATAGAAGGGTG  200

seq1  GTACAGGCAAATATGAACACTCTTCTGTTCTTAAAGTATGACTGAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGGCAAATATGAACACTCTTCTGTTCTTAAAGTATGACTGAGTGGT  250

seq1  GTTTCATGTCTCTCACACAGAAATATTTTCTTTAAAAGACAGTTTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATGTCTCTCACACAGAAATATTTTCTTTAAAAGACAGTTTATCTA  300

seq1  AATCATTTCTCTATACCAGTTCTTGGGACTTCCTCAAACTTTCTCTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTCTCTATACCAGTTCTTGGGACTTCCTCAAACTTTCTCTTGCT  350

seq1  TTCCCCCAGTCTTTTTCAAGTCATTTGATTTGAAAAGGTTTCTTGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCCAGTCTTTTTCAAGTCATTTGATTTGAAAAGGTTTCTTGTTCTT  400

seq1  CTTTCTCAGCTCTTTGTTCTCAGATTCTAAATAGTTGGTTCACCTAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCAGCTCTTTGTTCTCAGATTCTAAATAGTTGGTTCACCTAAAAG  450

seq1  GGAAAAATGTACAACACACACACACACACACACACACACACACACACACA  500
      |||||||||||||    |||||||||||||||||||||||||||||||||
seq2  GGAAAAATGTACA----ACACACACACACACACACACACACACACACACA  496

seq1  CACACACACGGAATAAAAAATAAAAGGGCTGTTCCTTGAACACCAACCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACGGAATAAAAAATAAAAGGGCTGTTCCTTGAACACCAACCAG  546

seq1  GAAACTATATCCATACCTACTTTGTAGGGAGACGAGTATCACCACTTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATATCCATACCTACTTTGTAGGGAGACGAGTATCACCACTTTGT  596

seq1  GTTGGAAGCTCTTTATGTGCTTCAGACAAAGTTCTAATGATTACTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAAGCTCTTTATGTGCTTCAGACAAAGTTCTAATGATTACTTTTTT  646

seq1  CTATTTTTGAATGATGTTCCCCTCTTCTTATTTTGTACTTAGATACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTGAATGATGTTCCCCTCTTCTTATTTTGTACTTAGATACTCTG  696

seq1  TGAAAGGGTAAGAAGCATATATATGTATATATATTTTAGTAAAACAATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGTAAGAAGCATATATATGTATATATATTTTAGTAAAACAATGA  746

seq1  ACTTTGTTTGCTACTCCTCTATCATTTGTAATGTTTATAATATAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTTGCTACTCCTCTATCATTTGTAATGTTTATAATATAAAAATT  796

seq1  TGTTACATAGATCTGAACAAAACTTAAGTAACACTGGGCTTTTGAGTTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACATAGATCTGAACAAAACTTAAGTAACACTGGGCTTTTGAGTTAG  846

seq1  GATAGATTTGATGGAATTGTGTCAAGGAGGAAAAGAGTATTTGTGGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATTTGATGGAATTGTGTCAAGGAGGAAAAGAGTATTTGTGGAGCA  896

seq1  CACATAT-GGCTGCTGGAAGAGAAGAGAGCTGAAGCTTCCAACATGCAAT  949
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGGGCTGCTGGAAGAGAAGAGAGCTGAAGCTTCCAACATGCAAT  946

seq1  GAGTATGG-TTCCTATACACACTTTCCTGGACCCTAACCACAGGTGTCTC  998
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  GAGTATGGTTTCCTATACACAC-TTCCTGGACCCTAACCACAGGTGTCTC  995

seq1  TTTTGAAGAGTCAATATTACA-GGCCCTGTTTGTGAAATCTTTTACTTGG  1047
      ||||||||||||||||||||| |||| ||||||||||||| |||||||||
seq2  TTTTGAAGAGTCAATATTACAGGGCCTTGTTTGTGAAATC-TTTACTTGG  1044

seq1  CTTCAT-ATTCACCCTATCTGATGAACTTCAAGTTTTATGTTTTACTAA-  1095
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTCATAATTCACCCTATCTGATGAACTTCAAGTTTTATGTTTTACTAAA  1094

seq1  -TATAGTCTAGAG-ATTCTTTGGAATTA-TCATCAG-AGTGATTTTATCT  1141
        ||||||||||| |||||||||||||| ||||||| ||||| |||||||
seq2  TAATAGTCTAGAGAATTCTTTGGAATTATTCATCAGAAGTGA-TTTATCT  1143

seq1  GCC  1144
      |||
seq2  GCC  1146


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