BAC Information

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BAC

Clone NameB6Ng01-348N12
Chromosome1 (Build37)
Map Location 128,065,392 - 128,200,782
singlet/doubletdoublet
Overlap geneE030049G20Rik
Upstream geneActr3, Slc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348N12.bB6Ng01-348N12.g
ACCGA130012GA130013
length1,2111,111
definitionB6Ng01-348N12.b B6Ng01-348N12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,065,392 - 128,066,619)(128,199,657 - 128,200,782)
sequence
gaattcagagctacactaccagtcagagtcccagtgatcctcttgtcccc
atctcccaacacagcctgtggttacaggtttgcatggcctcacccagttt
gatatatggatgttgggcatccaagctcaggtcctagtgctacttactac
ccacagtgccttaaagatagtctttaaaaattaagtaatgagcccaactc
aaccttgaaaaatcaaagttaaaggaaaaacaactatttttaggaatagt
cagctatatttattaggctggtctcaaactcattttcttgtctttgcctc
ccaaaagcttgctgggattacagacatgtaccattgtacttaactgaaaa
taattaaaatctattcattctgtctttactagagaatgtagagccaggca
gttaaatctagttgatgtcaggcattcctctttcacccataataagggag
tcacggaagatacctaatgtggtcagccatttctaaagatggaggaggat
ggcatgggcatctgaggtccgagcctgggccaacataggtctcctcatag
acagctgttccagttttgtctcatctaattagggctatgccattcctctt
gtcactggggttggttaacatgctcagggctaaatcaatgagtgcctggc
ttgtctctggccacaagggattgattcaggaaaaaaaccataattgcttc
tggctttagttccctgaaggtaggtatctaggaactgggcctccataggg
attttgaaaaacaaggctctgcagtttttaaattctttctctttggaaaa
aaactttttttattttaaaaatttcctatatttatataataaaataagat
tatatttactctctaactccccacatgttcccaaaaacaggtaccctttc
caacttcccatttatttatttattatttatttatataactcactaaaatg
cagcatccactggaatatgggaaacttaccaatggccatatcctcaaaaa
gaagattgattctccttccccagaaactaccccactgctaacatctcagc
aaagatgggccaagaagttcatctattcatctacgccgagaattgatgtc
ctgatggaggtttctgtcgagtactttaggaaatgtataatgtgcattcg
cttggctgaactgtatcatcatgaggagctttctcaagagatatgtttag
tcaggaaagag

gaattctcttctggcatctctaagcatctacattcatgagcacacaccta
cacagagagacatacacatacacatacttataagaattacaaagtggcat
ttgcatctttaagctctgatactttacttattctatacttagtctctgac
ctgccttagtcaccttccttgattttgataaacacagaagactctgacct
ataagctctccttgcctactgtgccatggatacattcagctcttttccca
gcgtggaggactcagatttgaatttctcatggtaaatgtgatggttcata
ttgatgatcagtgtgacaggatcttgaatcacatagaggtgcacccctag
aagtttatctaaagtttctatatcaggttaattgaggtggggagccctcc
attaaacaacggtggcaccatttcatggctgggttcctggagatattcaa
aaggagaaagtgaatggagcgccgtgaccatccttctgcctcctgacatt
gggcagcatgtgacctgccaatgccatccctttctcatcatgatggactg
tgtcctcacactgtgaaccaatttaacccttattcctttaaatagccttt
gtccggggtattttatcacagcagtaggaaaattaactcctacatgaaat
ttggacattgaattacatacactttgcaatatactgaggtctgtattttg
agaaaatgctttcatacatttccttttgcagtttaaatagattacataag
gattaagaacaaggaagaattatatggtttataatgtggcacagaaaaga
tatcttttcttagtcactaaatccaagttatgtgaaaatgtcaggaactg
gagcttgttttgaaaaatctgtaagccacctacattagaaagaataaatg
ggaaatttgtctaaaagagtagaacatatgtggggaattatatgtgtttt
gatctgcatgggccatgcatgggcagagatagggcagtgcaaagaaggtg
acttgagttataagatcactagccaaatatacaaataatgtatttctaaa
ccaacaggcttcagagtagattggtggttgtggtagcatgtttatgctgt
gatcagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_128065392_128066619
seq2: B6Ng01-348N12.b_46_1256

seq1  GAATTCAGAGCTACACTACCAGTCAGAGTCCCAGTGATCCTCTTGTCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTACACTACCAGTCAGAGTCCCAGTGATCCTCTTGTCCCC  50

seq1  ATCTCCCAACACAGCCTGTGGTTACAGGTTTGCATGGCCTCACCCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAACACAGCCTGTGGTTACAGGTTTGCATGGCCTCACCCAGTTT  100

seq1  GATATATGGATGTTGGGCATCCAAGCTCAGGTCCTAGTGCTACTTACTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATGGATGTTGGGCATCCAAGCTCAGGTCCTAGTGCTACTTACTAC  150

seq1  CCACAGTGCCTTAAAGATAGTCTTTAAAAATTAAGTAATGAGCCCAACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGCCTTAAAGATAGTCTTTAAAAATTAAGTAATGAGCCCAACTC  200

seq1  AACCTTGAAAAATCAAAGTTAAAGGAAAAACAACTATTTTTAGGAATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGAAAAATCAAAGTTAAAGGAAAAACAACTATTTTTAGGAATAGT  250

seq1  CAGCTATATTTATTAGGCTGGTCTCAAACTCATTTTCTTGTCTTTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTATATTTATTAGGCTGGTCTCAAACTCATTTTCTTGTCTTTGCCTC  300

seq1  CCAAAAGCTTGCTGGGATTACAGACATGTACCATTGTACTTAACTGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGCTTGCTGGGATTACAGACATGTACCATTGTACTTAACTGAAAA  350

seq1  TAATTAAAATCTATTCATTCTGTCTTTACTAGAGAATGTAGAGCCAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAATCTATTCATTCTGTCTTTACTAGAGAATGTAGAGCCAGGCA  400

seq1  GTTAAATCTAGTTGATGTCAGGCATTCCTCTTTCACCCATAATAAGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATCTAGTTGATGTCAGGCATTCCTCTTTCACCCATAATAAGGGAG  450

seq1  TCACGGAAGATACCTAATGTGGTCAGCCATTTCTAAAGATGGAGGAGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGAAGATACCTAATGTGGTCAGCCATTTCTAAAGATGGAGGAGGAT  500

seq1  GGCATGGGCATCTGAGGTCCGAGCCTGGGCCAACATAGGTCTCCTCATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGGCATCTGAGGTCCGAGCCTGGGCCAACATAGGTCTCCTCATAG  550

seq1  ACAGCTGTTCCAGTTTTGTCTCATCTAATTAGGGCTATGCCATTCCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGTTCCAGTTTTGTCTCATCTAATTAGGGCTATGCCATTCCTCTT  600

seq1  GTCACTGGGGTTGGTTAACATGCTCAGGGCTAAATCAATGAGTGCCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGGGTTGGTTAACATGCTCAGGGCTAAATCAATGAGTGCCTGGC  650

seq1  TTGTCTCTGGCCACAAGGGATTGATTCAGGAAAAAAACCATAATTGCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCTGGCCACAAGGGATTGATTCAGGAAAAAAACCATAATTGCTTC  700

seq1  TGGCTTTAGTTCCCTGAAGGTAGGTATCTAGGAACTGGGCCTCCATAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTTAGTTCCCTGAAGGTAGGTATCTAGGAACTGGGCCTCCATAGGG  750

seq1  ATTTTGAAAAACAAGGCTCTGCAGTTTTTAAATTCTTTCTCTTTGGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAAAACAAGGCTCTGCAGTTTTTAAATTCTTTCTCTTTGGAAAA  800

seq1  AAACTTTTTTTATTTTAAAAATTTCCTATATTTATATAATAAAATAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTTTATTTTAAAAATTTCCTATATTTATATAATAAAATAAGAT  850

seq1  TATATTTACTCTCTAACTCCCCACATGTTCCCAAAAACAGGTACCCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTACTCTCTAACTCCCCACATGTTCCCAAAAACAGGTACCCTTTC  900

seq1  CAACTTCCCATTTATTTATTTATTTATTTATTTATATAACTCACTAAAAT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAACTTCCCATTTATTTATTTA-TTATTTATTTATATAACTCACTAAAAT  949

seq1  GCAGCATCCACTGGAATATGGGAAACTTACCAATGGCCATATCCTCAAAA  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCAGCATCCACTGGAATATGGGAAACTTACCAATGGCCATATCCTC-AAA  998

seq1  AAGAAGGATTGATTCTCCTTCCCCAGAAACTA-CCCACTGCTAACATCCT  1049
      ||||| |||||||||||||||||||||||||| |||||||||||||| ||
seq2  AAGAA-GATTGATTCTCCTTCCCCAGAAACTACCCCACTGCTAACAT-CT  1046

seq1  CAGCAAAGGATGGGGCCAAG-AGTTCATCTATTCCATCTACGCCGAGATT  1098
      ||||||| ||| |||||||| |||||||||||| |||||||||||||| |
seq2  CAGCAAA-GAT-GGGCCAAGAAGTTCATCTATT-CATCTACGCCGAGAAT  1093

seq1  TGGATTGTCCTGATGGAGGGTTTCCTGTCAGAGTTACTTTAGGAGATGTA  1148
      ||   ||||||||||||||  || ||||| ||| |||||||||| |||||
seq2  TG--ATGTCCTGATGGAGG--TTTCTGTC-GAG-TACTTTAGGAAATGTA  1137

seq1  TAAATGTGCATATCGCTTTGGCTG-ACTGTAGTCATCAATGAAGGAAGCT  1197
      | ||||||||| |||| ||||||| |||||| ||||| ||||  | ||||
seq2  T-AATGTGCAT-TCGC-TTGGCTGAACTGTA-TCATC-ATGA--GGAGCT  1180

seq1  GTCTCAAGAAGTATGTTAATGCAGGAAAGAG  1228
       ||||||||  |||||| |  ||||||||||
seq2  TTCTCAAGAGATATGTTTAGTCAGGAAAGAG  1211


seq1: chr1_128199657_128200782
seq2: B6Ng01-348N12.g_67_1177 (reverse)

seq1  ACACACTTGTACTCACAAGCATAAACATGCCTTACCACA--CA-CAATCT  47
      ||||||   |  |||| |||||||||||||  |||||||  || ||||||
seq2  ACACAC---TGATCAC-AGCATAAACATGC--TACCACAACCACCAATCT  44

seq1  ACTTCTGAAACCCTGTTTGGTTTTAGAAATACAATTTATTTGTATAATTT  97
      || |||| || ||||||  | ||||||||||||  |||||||||| ||||
seq2  AC-TCTG-AAGCCTGTT--GGTTTAGAAATACA--TTATTTGTAT-ATTT  87

seq1  GGCTAAGTGATCCTTAATAAACTCAAAGGTCACCTTTCTTTGCACTGGCC  147
      |||| |||||| ||||   |||||||  |||||| ||||||||||| |||
seq2  GGCT-AGTGAT-CTTA--TAACTCAA--GTCACC-TTCTTTGCACT-GCC  129

seq1  CTATCTCTG-CCATGCATGG-CCATGCAGATCAAAACACATATAATT-CC  194
      ||||||||| |||||||||| |||||||||||||||||||||||||| ||
seq2  CTATCTCTGCCCATGCATGGCCCATGCAGATCAAAACACATATAATTCCC  179

seq1  CACATATGTTCTACTCTTTTTAGAC-AATTTCCATTTTATTCTTTCTAAT  243
      |||||||||||||||| |||||||| |||||||  |||||||||||||||
seq2  CACATATGTTCTACTC-TTTTAGACAAATTTCCCATTTATTCTTTCTAAT  228

seq1  GTAGGTGGCTTACAGATTTTTCAAAACAAGCTCCAGTTCCTGACATTTTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGCTTACAGATTTTTCAAAACAAGCTCCAGTTCCTGACATTTTC  278

seq1  ACATAACTTGGATTTAGTGACTAAGAAAAGATATCTTTTCTGTGCCACAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACTTGGATTTAGTGACTAAGAAAAGATATCTTTTCTGTGCCACAT  328

seq1  TATAAACCATATAATTCTTCCTTGTTCTTAATCCTTATGTAATCTATTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACCATATAATTCTTCCTTGTTCTTAATCCTTATGTAATCTATTTA  378

seq1  AACTGCAAAAGGAAATGTATGAAAGCATTTTCTCAAAATACAGACCTCAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAAAGGAAATGTATGAAAGCATTTTCTCAAAATACAGACCTCAG  428

seq1  TATATTGCAAAGTGTATGTAATTCAATGTCCAAATTTCATGTAGGAGTTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGCAAAGTGTATGTAATTCAATGTCCAAATTTCATGTAGGAGTTA  478

seq1  ATTTTCCTACTGCTGTGATAAAATACCCCGGACAAAGGCTATTTAAAGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTACTGCTGTGATAAAATACCCCGGACAAAGGCTATTTAAAGGA  528

seq1  ATAAGGGTTAAATTGGTTCACAGTGTGAGGACACAGTCCATCATGATGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGTTAAATTGGTTCACAGTGTGAGGACACAGTCCATCATGATGAG  578

seq1  AAAGGGATGGCATTGGCAGGTCACATGCTGCCCAATGTCAGGAGGCAGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGATGGCATTGGCAGGTCACATGCTGCCCAATGTCAGGAGGCAGAA  628

seq1  GGATGGTCACGGCGCTCCATTCACTTTCTCCTTTTGAATATCTCCAGGAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTCACGGCGCTCCATTCACTTTCTCCTTTTGAATATCTCCAGGAA  678

seq1  CCCAGCCATGAAATGGTGCCACCGTTGTTTAATGGAGGGCTCCCCACCTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCATGAAATGGTGCCACCGTTGTTTAATGGAGGGCTCCCCACCTC  728

seq1  AATTAACCTGATATAGAAACTTTAGATAAACTTCTAGGGGTGCACCTCTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACCTGATATAGAAACTTTAGATAAACTTCTAGGGGTGCACCTCTA  778

seq1  TGTGATTCAAGATCCTGTCACACTGATCATCAATATGAACCATCACATTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCAAGATCCTGTCACACTGATCATCAATATGAACCATCACATTT  828

seq1  ACCATGAGAAATTCAAATCTGAGTCCTCCACGCTGGGAAAAGAGCTGAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGAGAAATTCAAATCTGAGTCCTCCACGCTGGGAAAAGAGCTGAAT  878

seq1  GTATCCATGGCACAGTAGGCAAGGAGAGCTTATAGGTCAGAGTCTTCTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCATGGCACAGTAGGCAAGGAGAGCTTATAGGTCAGAGTCTTCTGT  928

seq1  GTTTATCAAAATCAAGGAAGGTGACTAAGGCAGGTCAGAGACTAAGTATA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCAAAATCAAGGAAGGTGACTAAGGCAGGTCAGAGACTAAGTATA  978

seq1  GAATAAGTAAAGTATCAGAGCTTAAAGATGCAAATGCCACTTTGTAATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGTAAAGTATCAGAGCTTAAAGATGCAAATGCCACTTTGTAATTC  1028

seq1  TTATAAGTATGTGTATGTGTATGTCTCTCTGTGTAGGTGTGTGCTCATGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTATGTGTATGTGTATGTCTCTCTGTGTAGGTGTGTGCTCATGA  1078

seq1  ATGTAGATGCTTAGAGATGCCAGAAGAGAATTC  1126
      |||||||||||||||||||||||||||||||||
seq2  ATGTAGATGCTTAGAGATGCCAGAAGAGAATTC  1111


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