BAC Information

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BAC

Clone NameB6Ng01-348N14
Chromosome1 (Build37)
Map Location 36,511,680 - 36,650,214
singlet/doubletdoublet
Overlap geneCnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik
Upstream geneLOC100041544, LOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l
Downstream geneBC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3, Inpp4a, 6330578E17Rik, Unc50, Mgat4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348N14.bB6Ng01-348N14.g
ACCGA130016GA130017
length1,1561,018
definitionB6Ng01-348N14.b B6Ng01-348N14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,511,680 - 36,512,833)(36,649,216 - 36,650,214)
sequence
gaattctaccaaagctatattatcagccccaggtgtctggactttacaca
gatggtctgttttatatcacaggctagccctgtaaagtctcactgtgtcc
caggctagctccttaaggtctcactgtgtaccccaggatggacttaccca
cacaatcctattgcctcagatttctgagtgcggggattataggcctgaac
taccacacctggtaaaaatagtttaaaacttttcttctaaggggcaggat
aaggtgctcaccacctcgcctacacacccgagcttgagccccaagaccca
cacggtgaaaggaaagagctgagtccaaaggttgtcctctaatttctgtg
catgtgccatggtacatgcacatacccagacacacacatgtgcatacaca
tatgcacacacatacacacacacacacacacacacacacatatatatata
tatatatatacatatatgtgcacacacatacacacatgaatacacacaca
cacacacacacagagtctgcttttcaagggaaccaggttctattcccaac
acttgcaaggctgctcacaacggtcagcaactctagtttcaggggtttta
acacctccttctggcctttctggtgcacatgacacacgccggcaaaacag
ccacacacataaaataaaatttagaataaaaaaatttcctgcatctggcc
atggcggcacagacctgtaatcccatttgctaagacaggatggttgcaag
ttcaaggtttgcctgggccaccagcaggcaatttcaaaccaatctgggct
agtaaaaaggggtaagatggggcagggtggccctggggttagagttcaat
ggaggagcacttgcttggtaggtaggaggcactagatgcaatccttaata
tgggtaaatatatacatagcatctgaactacgtgtgtacagacttatctt
gtgaccatcccatattacagctgttaacacagaattgacacatgttagat
gtcaaatattcagagatgctttatggtcagtgagagggggttgacacaat
tgactcaatagtgggatacttttgtagcatgcaggaagctcttgtttgat
acagaagcttcagaagaagagtacggggaggagaggatctaaggaaaata
cacatc
gaattccaagcctctcccccagtgccctctcagcatccttttattttgaa
gtggccaatcaaggaagttcaatctccttgatccctccacaaggagttag
ctgaagacagcagcctgggaggaagggatttcacaatgagcaggtgtgca
cggggaacaaagcagagacaaggtaggtgcagaggggctttccctggacc
ctccccctccctctcccacctcccctccccctccctgctgtgctcttgct
ggctgtgctcctgcagtgtctgcagtgggaccagagggcccacatttgct
tctttcagctccacacaacactcaggttctagctcaggtactgcacctct
tgccactgttcaatgcctccttgcgtccactttagacttacctgccctga
aacggggtggccttgtgaactggagccttgaccccttcaggctcccactc
tgtgggctgctagccagccttttccaggccctcggcaatcccaacaccac
gaacaagcgctgttgaagtgtcccactgccagcaaacggcagtgtctctc
cactcctgcccccacaatgccacttccttcccactagacccctagttcca
tatcttgacagttctttcctggataaggctgcactccagtaccctgcagt
tcttcctggagacccagtccagtctgactgtggctgtcttttttcaagat
gatccatccttttctataggagtgtgaccttcccttccaaacactgtcag
ttcccctctactgaaaatctgttcaggatgggagtgggaggcgcttagag
agatggcacaaaaggttagagtcactgggctgctcttgcacagggcctag
gcttggtagtcccagccacccacacagctttttttttctagtatcagcac
cagaggtcttctgatccgttggaagaacctaagctacatatgtgggcaca
tacattgaaatggtagttcaacacgccttcataccgaaaaaataaaggaa
ttttaaaaaaatttctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_36511680_36512833
seq2: B6Ng01-348N14.b_47_1202

seq1  GAATTCTACCAAAGCTATATTATCAGCCCCAGGTGTCTGGACTTTACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCAAAGCTATATTATCAGCCCCAGGTGTCTGGACTTTACACA  50

seq1  GATGGTCTGTTTTATATCACAGGCTAGCCCTGTAAAGTCTCACTGTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTCTGTTTTATATCACAGGCTAGCCCTGTAAAGTCTCACTGTGTCC  100

seq1  CAGGCTAGCTCCTTAAGGTCTCACTGTGTACCCCAGGATGGACTTACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTAGCTCCTTAAGGTCTCACTGTGTACCCCAGGATGGACTTACCCA  150

seq1  CACAATCCTATTGCCTCAGATTTCTGAGTGCGGGGATTATAGGCCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCCTATTGCCTCAGATTTCTGAGTGCGGGGATTATAGGCCTGAAC  200

seq1  TACCACACCTGGTAAAAATAGTTTAAAACTTTTCTTCTAAGGGGCAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACCTGGTAAAAATAGTTTAAAACTTTTCTTCTAAGGGGCAGGAT  250

seq1  AAGGTGCTCACCACCTCGCCTACACACCCGAGCTTGAGCCCCAAGACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTCACCACCTCGCCTACACACCCGAGCTTGAGCCCCAAGACCCA  300

seq1  CACGGTGAAAGGAAAGAGCTGAGTCCAAAGGTTGTCCTCTAATTTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTGAAAGGAAAGAGCTGAGTCCAAAGGTTGTCCTCTAATTTCTGTG  350

seq1  CATGTGCCATGGTACATGCACATACCCAGACACACACATGTGCATACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCATGGTACATGCACATACCCAGACACACACATGTGCATACACA  400

seq1  TATGCACACACATACACACACACACACACACACACACACATATATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACACACATACACACACACACACACACACACACACATATATATATA  450

seq1  TATATATATACATATATGTGCACACACATACACACATGAATACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATACATATATGTGCACACACATACACACATGAATACACACACA  500

seq1  CACACACACACAGAGTCTGCTTTTCAAGGGAACCAGGTTCTATTCCCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGTCTGCTTTTCAAGGGAACCAGGTTCTATTCCCAAC  550

seq1  ACTTGCAAGGCTGCTCACAACGGTCAGCAACTCTAGTTTCAGGGGTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAAGGCTGCTCACAACGGTCAGCAACTCTAGTTTCAGGGGTTTTA  600

seq1  ACACCTCCTTCTGGCCTTTCTGGTGCACATGACACACGCCGGCAAAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCCTTCTGGCCTTTCTGGTGCACATGACACACGCCGGCAAAACAG  650

seq1  CCACACACATAAAATAAAATTTAGAATAAAAAAATTTCCTGCATCTGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACATAAAATAAAATTTAGAATAAAAAAATTTCCTGCATCTGGCC  700

seq1  ATGGCGGCACAGACCTGTAATCCCATTTGCTAAGACAGGATGGTTGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCGGCACAGACCTGTAATCCCATTTGCTAAGACAGGATGGTTGCAAG  750

seq1  TTCAAGGTTTGCCTGGGCCACCAGCAGGCAATTTCAAACCAATCTGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTTTGCCTGGGCCACCAGCAGGCAATTTCAAACCAATCTGGGCT  800

seq1  AGTAAAAAGGGGTAAGAT-GGGCAGGGTGGCCCTGGGGTTAGAGTTCAAT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGTAAAAAGGGGTAAGATGGGGCAGGGTGGCCCTGGGGTTAGAGTTCAAT  850

seq1  GGAGGAGCACTTGCTTGGTAGGTAGGAGGCACTAGATGCAATCCTTAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGCACTTGCTTGGTAGGTAGGAGGCACTAGATGCAATCCTTAATA  900

seq1  TGGGTAAATATATACATAGCATCTGAACTACGTGTGTACAGACTTATCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAATATATACATAGCATCTGAACTACGTGTGTACAGACTTATCTT  950

seq1  GTGACCATCCCATA-TACAGCTGTTAACACAGAATTGACACCATGTTAGA  998
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GTGACCATCCCATATTACAGCTGTTAACACAGAATTGACA-CATGTTAGA  999

seq1  TGTCAAATATTTCAGAGATGCTTTATGGTCAGTGAGGAGGGGGTTGGACA  1048
      ||||||||| ||||||||||||||||||||||||| ||||||||| ||||
seq2  TGTCAAATA-TTCAGAGATGCTTTATGGTCAGTGA-GAGGGGGTT-GACA  1046

seq1  C-ATTGACTCAATAGTGGGATACTTTTGTAGCATGCAGGAGGCTC-TGTT  1096
      | |||||||||||||||||||||||||||||||||||||| |||| ||||
seq2  CAATTGACTCAATAGTGGGATACTTTTGTAGCATGCAGGAAGCTCTTGTT  1096

seq1  TGATACCAGAGCTTCAG-AGAAGAGAAGGGTGAGGAGAGGATCT-AGGAG  1144
      ||||||   |||||||| ||||||| | || ||||||||||||| |||| 
seq2  TGATACAGAAGCTTCAGAAGAAGAGTACGGGGAGGAGAGGATCTAAGGAA  1146

seq1  AATACACATC  1154
      ||||||||||
seq2  AATACACATC  1156

seq1: chr1_36649216_36650214
seq2: B6Ng01-348N14.g_65_1082 (reverse)

seq1  TAAG-AATTTTTTTAAAAATTCTTTA--TTTTCTGTATGA--GAGTGTTG  45
      |||| ||||||||||||| | |||||  ||||| ||||||  | ||||||
seq2  TAAGAAATTTTTTTAAAATTCCTTTATTTTTTCGGTATGAAGGCGTGTTG  50

seq1  AACCTACATTT-AATGTATGTGCCCACATGTGT-GCTTA-GTTC-TCCAA  91
      |||   ||||| ||||||||||||||||| ||| ||||| |||| |||||
seq2  AACTACCATTTCAATGTATGTGCCCACATATGTAGCTTAGGTTCTTCCAA  100

seq1  CGGATCAGAAGACCTCTGGTGCTGATACTAG--AAAAAAAGCTGTGTGGG  139
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  CGGATCAGAAGACCTCTGGTGCTGATACTAGAAAAAAAAAGCTGTGTGGG  150

seq1  T-GCTGGGAC-ACCAAGCCTAGGCCCTGTGCAAGAGCAG-CCAGTG-CTC  185
      | |||||||| |||||||||||||||||||||||||||| |||||| |||
seq2  TGGCTGGGACTACCAAGCCTAGGCCCTGTGCAAGAGCAGCCCAGTGACTC  200

seq1  TTAACTTTTGTGCCATCTCTCT-AGCGCCT-CCACTCCCATCCTGAACAG  233
      | | |||||||||||||||||| ||||||| |||||||||||||||||||
seq2  TAACCTTTTGTGCCATCTCTCTAAGCGCCTCCCACTCCCATCCTGAACAG  250

seq1  ATTTTCAGTAGA-GGGAACTGACAGTGTTTGGAAGGGAAGGTCACACTCC  282
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTAGAGGGGAACTGACAGTGTTTGGAAGGGAAGGTCACACTCC  300

seq1  TATAG-AAAGGATGGATCATCTTGAAAAAAGACAGCCACAGTCAGACTGG  331
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAAGGATGGATCATCTTGAAAAAAGACAGCCACAGTCAGACTGG  350

seq1  ACTGGGTCTCCAGGAAGAACTGCAGGGTACTGGAGTGCAGCCTTATCCAG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTCTCCAGGAAGAACTGCAGGGTACTGGAGTGCAGCCTTATCCAG  400

seq1  GAAAGAACTGTCAAGATATGGAACTAGGGGTCTAGTGGGAAGGAAGTGGC  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAACTGTCAAGATATGGAACTAGGGGTCTAGTGGGAAGGAAGTGGC  450

seq1  ATTGTGGGGGCAGGAGTGGAGAGACACTGCCGTTTGCTGGCAGTGGGACA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGGGGCAGGAGTGGAGAGACACTGCCGTTTGCTGGCAGTGGGACA  500

seq1  CTTCAACAGCGCTTGTTCGTGGTGTTGGGATTGCCGAGGGCCTGGAAAAG  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACAGCGCTTGTTCGTGGTGTTGGGATTGCCGAGGGCCTGGAAAAG  550

seq1  GCTGGCTAGCAGCCCACAGAGTGGGAGCCTGAAGGGGTCAAGGCTCCAGT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTAGCAGCCCACAGAGTGGGAGCCTGAAGGGGTCAAGGCTCCAGT  600

seq1  TCACAAGGCCACCCCGTTTCAGGGCAGGTAAGTCTAAAGTGGACGCAAGG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGGCCACCCCGTTTCAGGGCAGGTAAGTCTAAAGTGGACGCAAGG  650

seq1  AGGCATTGAACAGTGGCAAGAGGTGCAGTACCTGAGCTAGAACCTGAGTG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGAACAGTGGCAAGAGGTGCAGTACCTGAGCTAGAACCTGAGTG  700

seq1  TTGTGTGGAGCTGAAAGAAGCAAATGTGGGCCCTCTGGTCCCACTGCAGA  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGGAGCTGAAAGAAGCAAATGTGGGCCCTCTGGTCCCACTGCAGA  750

seq1  CACTGCAGGAGCACAGCCAGCAAGAGCACAGCAGGGAGGGGGAGGGGAGG  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGGAGCACAGCCAGCAAGAGCACAGCAGGGAGGGGGAGGGGAGG  800

seq1  AGGGAGAGGGAGGGGGAGGGTCCAGGGAAAGCCCCTCTGCACCTACCTTG  831
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAGGGAGGGGGAGGGTCCAGGGAAAGCCCCTCTGCACCTACCTTG  850

seq1  TCTCTGCTTTGTTCCCCGTGCACACCTGCTCATTGTGAAATCCCTTCCTC  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTTTGTTCCCCGTGCACACCTGCTCATTGTGAAATCCCTTCCTC  900

seq1  CCAGGCTGCTGTCTTCAGCTAACTCCTTGTGGAGGGATCAAGGAGATTGA  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTGCTGTCTTCAGCTAACTCCTTGTGGAGGGATCAAGGAGATTGA  950

seq1  ACTTCCTTGATTGGCCACTTCAAAATAAAAGGATGCTGAGAGGGCACTGG  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGATTGGCCACTTCAAAATAAAAGGATGCTGAGAGGGCACTGG  1000

seq1  GGGAGAGGCTTGGAATTC  999
      ||||||||||||||||||
seq2  GGGAGAGGCTTGGAATTC  1018