BAC Information

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BAC

Clone NameB6Ng01-348O19
Chromosome1 (Build37)
Map Location 30,190,580 - 30,309,048
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-348O19.bB6Ng01-348O19.g
ACCGA130065GA130066
length1,1471,164
definitionB6Ng01-348O19.b B6Ng01-348O19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,307,890 - 30,309,048)(30,190,580 - 30,191,745)
sequence
gaattcttactttgaaattccctaagaaccatacaggtagtgtgagtttg
agttgaaaacccataaagatgggcaaagagttctcaacttctgtgaaata
tactgttttgcaaggtagttttttatgctgttctctctgtgtgtatctct
ctgtctctctgtctctgtctctgtctgtctgtctctcttcctttctttct
ctctcttctcctttcagtttgtttatgtggtggattgattagatagggtg
attttcatatgtcaaacagttcccacttctctggtatgaagcaaagttga
tcatggtggataatctttttgatctgttgttggattctagctatttgtat
cttgtctattcattagccttgtttggatattcacagtgctaacaaactca
ttctataaaatctgtaagaaagatatatttaaaagcagacaggtgggcaa
ccttattcaggcaactgacttcctagatatctttcttgtgcattctatag
cagaaaagtttaaaacaaataactgtgatgatactatgagcctcactttt
ccagaattcataaaaatcctaaagcaccagtaatcagatattagaaagtg
aaacagggagagcccaaggatggtaaagtgaagacagagcacttcaatgg
gcttatttccttatggactctttctctgcttgaattgaatagatggacat
taaaaccatgggtcaaaacttatagtaaaattatcttcagacttccagtg
ttacatttttatcctgaaaccttaatccttcacctgactggatttataag
tagggtctttgaaagataatgacagttaagtaagatatttatttatttat
ttgtatattttctttatttaaatttcaaatgttatcccctttccaagtct
tcccctccagaaacccctatcccatccatctctccctgcttctaataagg
gtgctccccaacccactacccactctgtcttcctgccctggcattctcta
tactgggacattgaaccccacaggacaaggccacttcttccattgatgtc
acaagatcatctctacaatatatgtggcagaagcaccggttctttcatgt
gggacctccaagtggtcctcactttgtatgggtggtccagtctccag

gaattcctatttatcttgtataattttacaaaataccttttaattataat
aatttgcttgcctaaaataaaaatattttcttggatatgtggtttcttga
cactgaaagataaaggaatttctaatttagaaaccatctcaagaaacaat
aaaggaataggagtcattttagttttaaaatgaaatgagtaaggtattat
taatcatatagtagtacttgaaatgaatctccatcaaatgttctatttga
ggttctgatcatgtctaagatgatttgtatgaaaggaagaaagatcattt
attttgaagcaagagcactcatggtagtgtttctgattaatgatgcctca
tctaaaactaactcatattgacaactgtggtacggacataaggatcacac
tcttcagtagcttctgacttctatatattatactctccttaaatcatatt
ttattttcagtttctgatgttagtattaatagatgggtcccttccactag
tttactgtgggttgcaggatgttaagttttctagtacctgggcaacagaa
gatcatactcgtagaagagatttctgcctaggataagttttctccaacag
ctgtaatctaggttagactacagagaagattgaggtcagtgtaataggag
ttaaaataaagacttaccacataatgctcatgtctgagttagctgtcttt
gaagatgaggaacacttcaagggccaagaataaaactgaagtttctaaag
tttagaaaaactcctataggtctaatatgggaactatggttgaatatgta
tttagaataaagttagaattacatagtttagaaaagcaatggtagaagac
tctcctctagcatcattgacctcactagccctagagactatggggagttg
actaggtttccactttttccctcctgttgattgaacaactccttatgcct
gattagacactgttcattatcaccaagatatgtgtgccacttattgtaca
cttaggatatcatggcacagtgacattattatagtttatagttcacaagc
tattaagaggtaatgactactttccttcctttggcagattgtctaagaat
ataatgcctatttggagagctaatctcaagagaaatctttcagttcagat
tcaattgaaattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_30307890_30309048
seq2: B6Ng01-348O19.b_49_1195 (reverse)

seq1  CTGGGGACTGGACCA-CCAAACAAAGTGGAAGGACCACTTGGAGGTCCCA  49
      |||| |||||||||| ||| ||||||||  ||||||||||||||||||||
seq2  CTGGAGACTGGACCACCCATACAAAGTG--AGGACCACTTGGAGGTCCCA  48

seq1  CATGGAAGGACCCGTTGCTCTGGCCACATATATGGTAGAGGATGATCTTG  99
      ||| ||| || ||| ||||   ||||||||||| ||||| ||||||||||
seq2  CAT-GAAAGAACCGGTGCTTCTGCCACATATATTGTAGA-GATGATCTTG  96

seq1  TTGGACATCAATGGGAGGAGTGGCCCTTGGTCCTGTGGGGGTTCAATGTC  149
      |  ||||||||||| || |||||||  | ||||||| |||||||||||||
seq2  T--GACATCAATGGAAGAAGTGGCC--TTGTCCTGT-GGGGTTCAATGTC  141

seq1  CCAGTATAGAGGAATGCCAGGGCAGGAAGACAGGAGTGGGTAGGTGGGTT  199
      |||||||||| ||||||||||||||||||||| ||||||||| |||||||
seq2  CCAGTATAGA-GAATGCCAGGGCAGGAAGACA-GAGTGGGTA-GTGGGTT  188

seq1  GGGGGAGCACCCTTA-TAGAAGCAGGGAGAGATGGGATGGGATAGGGGGT  248
       |||||||||||||| ||||||||||||||||| |||||||||| |||||
seq2  -GGGGAGCACCCTTATTAGAAGCAGGGAGAGAT-GGATGGGATA-GGGGT  235

seq1  TTCTGGAGGGG-AGACTTGGAAAGGGGATAACATTTGAAATTTAAATAAA  297
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGGGGAAGACTTGGAAAGGGGATAACATTTGAAATTTAAATAAA  285

seq1  GAAAATATACAAATAAATAAATAAATATCTTACTTAACTGTCATTATCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATACAAATAAATAAATAAATATCTTACTTAACTGTCATTATCTT  335

seq1  TCAAAGACCCTACTTATAAATCCAGTCAGGTGAAGGATTAAGGTTTCAGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACCCTACTTATAAATCCAGTCAGGTGAAGGATTAAGGTTTCAGG  385

seq1  ATAAAAATGTAACACTGGAAGTCTGAAGATAATTTTACTATAAGTTTTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGTAACACTGGAAGTCTGAAGATAATTTTACTATAAGTTTTGA  435

seq1  CCCATGGTTTTAATGTCCATCTATTCAATTCAAGCAGAGAAAGAGTCCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTTTTAATGTCCATCTATTCAATTCAAGCAGAGAAAGAGTCCAT  485

seq1  AAGGAAATAAGCCCATTGAAGTGCTCTGTCTTCACTTTACCATCCTTGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATAAGCCCATTGAAGTGCTCTGTCTTCACTTTACCATCCTTGGG  535

seq1  CTCTCCCTGTTTCACTTTCTAATATCTGATTACTGGTGCTTTAGGATTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTGTTTCACTTTCTAATATCTGATTACTGGTGCTTTAGGATTTT  585

seq1  TATGAATTCTGGAAAAGTGAGGCTCATAGTATCATCACAGTTATTTGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATTCTGGAAAAGTGAGGCTCATAGTATCATCACAGTTATTTGTTT  635

seq1  TAAACTTTTCTGCTATAGAATGCACAAGAAAGATATCTAGGAAGTCAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTTCTGCTATAGAATGCACAAGAAAGATATCTAGGAAGTCAGTT  685

seq1  GCCTGAATAAGGTTGCCCACCTGTCTGCTTTTAAATATATCTTTCTTACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATAAGGTTGCCCACCTGTCTGCTTTTAAATATATCTTTCTTACA  735

seq1  GATTTTATAGAATGAGTTTGTTAGCACTGTGAATATCCAAACAAGGCTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATAGAATGAGTTTGTTAGCACTGTGAATATCCAAACAAGGCTAA  785

seq1  TGAATAGACAAGATACAAATAGCTAGAATCCAACAACAGATCAAAAAGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGACAAGATACAAATAGCTAGAATCCAACAACAGATCAAAAAGAT  835

seq1  TATCCACCATGATCAACTTTGCTTCATACCAGAGAAGTGGGAACTGTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCACCATGATCAACTTTGCTTCATACCAGAGAAGTGGGAACTGTTTG  885

seq1  ACATATGAAAATCACCCTATCTAATCAATCCACCACATAAACAAACTGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGAAAATCACCCTATCTAATCAATCCACCACATAAACAAACTGAA  935

seq1  AGGAGAAGAGAGAGAAAGAAAGGAAGAGAGACAGACAGACAGAGACAGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGAGAGAGAAAGAAAGGAAGAGAGACAGACAGACAGAGACAGAG  985

seq1  ACAGAGAGACAGAGAGATACACACAGAGAGAACAGCATAAAAAACTACCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGACAGAGAGATACACACAGAGAGAACAGCATAAAAAACTACCT  1035

seq1  TGCAAAACAGTATATTTCACAGAAGTTGAGAACTCTTTGCCCATCTTTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAACAGTATATTTCACAGAAGTTGAGAACTCTTTGCCCATCTTTAT  1085

seq1  GGGTTTTCAACTCAAACTCACACTACCTGTATGGTTCTTAGGGAATTTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCAACTCAAACTCACACTACCTGTATGGTTCTTAGGGAATTTCA  1135

seq1  AAGTAAGAATTC  1159
      ||||||||||||
seq2  AAGTAAGAATTC  1147


seq1: chr1_30190580_30191745
seq2: B6Ng01-348O19.g_68_1231

seq1  GAATTCCTATTTATCTTGTATAATTTTACAAAATACCTTTTAATTATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTATCTTGTATAATTTTACAAAATACCTTTTAATTATAAT  50

seq1  AATTTGCTTGCCTAAAATAAAAATATTTTCTTGGATATGTGGTTTCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTTGCCTAAAATAAAAATATTTTCTTGGATATGTGGTTTCTTGA  100

seq1  CACTGAAAGATAAAGGAATTTCTAATTTAGAAACCATCTCAAGAAACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAAGATAAAGGAATTTCTAATTTAGAAACCATCTCAAGAAACAAT  150

seq1  AAAGGAATAGGAGTCATTTTAGTTTTAAAATGAAATGAGTAAGGTATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATAGGAGTCATTTTAGTTTTAAAATGAAATGAGTAAGGTATTAT  200

seq1  TAATCATATAGTAGTACTTGAAATGAATCTCCATCAAATGTTCTATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATATAGTAGTACTTGAAATGAATCTCCATCAAATGTTCTATTTGA  250

seq1  GGTTCTGATCATGTCTAAGATGATTTGTATGAAAGGAAGAAAGATCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGATCATGTCTAAGATGATTTGTATGAAAGGAAGAAAGATCATTT  300

seq1  ATTTTGAAGCAAGAGCACTCATGGTAGTGTTTCTGATTAATGATGCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAAGCAAGAGCACTCATGGTAGTGTTTCTGATTAATGATGCCTCA  350

seq1  TCTAAAACTAACTCATATTGACAACTGTGGTACGGACATAAGGATCACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACTAACTCATATTGACAACTGTGGTACGGACATAAGGATCACAC  400

seq1  TCTTCAGTAGCTTCTGACTTCTATATATTATACTCTCCTTAAATCATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTAGCTTCTGACTTCTATATATTATACTCTCCTTAAATCATATT  450

seq1  TTATTTTCAGTTTCTGATGTTAGTATTAATAGATGGGTCCCTTCCACTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAGTTTCTGATGTTAGTATTAATAGATGGGTCCCTTCCACTAG  500

seq1  TTTACTGTGGGTTGCAGGATGTTAAGTTTTCTAGTACCTGGGCAACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTGGGTTGCAGGATGTTAAGTTTTCTAGTACCTGGGCAACAGAA  550

seq1  GATCATACTCGTAGAAGAGATTTCTGCCTAGGATAAGTTTTCTCCAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATACTCGTAGAAGAGATTTCTGCCTAGGATAAGTTTTCTCCAACAG  600

seq1  CTGTAATCTAGGTTAGACTACAGAGAAGATTGAGGTCAGTGTAATAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCTAGGTTAGACTACAGAGAAGATTGAGGTCAGTGTAATAGGAG  650

seq1  TTAAAATAAAGACTTACCACATAATGCTCATGTCTGAGTTAGCTGTCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAAGACTTACCACATAATGCTCATGTCTGAGTTAGCTGTCTTT  700

seq1  GAAGATGAGGAACACTTCAAGGGCCAAGAATAAAACTGAAGTTTCTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAGGAACACTTCAAGGGCCAAGAATAAAACTGAAGTTTCTAAAG  750

seq1  TTTAGAAAAACTCCTATAGGTCTAATATGGGAACTATGGTTGAATATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAAACTCCTATAGGTCTAATATGGGAACTATGGTTGAATATGTA  800

seq1  TTTAGAATAAAGTTAGAATTACATAGTTTAGAAAAGCAATGGTAGAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAATAAAGTTAGAATTACATAGTTTAGAAAAGCAATGGTAGAAGAC  850

seq1  CCTCCTCTAGCACCATTGACCTCACTAGCCCTAGAGACTATGGGGAGTTG  900
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCTAGCATCATTGACCTCACTAGCCCTAGAGACTATGGGGAGTTG  900

seq1  ACTAGGTTTCCACTTTTTCCCTCCTGTTGATTGAACAACTCCTTATGCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTTCCACTTTTTCCCTCCTGTTGATTGAACAACTCCTTATGCCT  950

seq1  GATTAGACAACTGTTCATTATCACCAAGATATGTGTGCCAC-TATTGTAC  999
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  GATTAGAC-ACTGTTCATTATCACCAAGATATGTGTGCCACTTATTGTAC  999

seq1  ACTTAGGGATATCATGGCACAGTGACCATTATTATAGTTTATAGGTTTCA  1049
      ||||| ||||||||||||||||||| ||||||||||||||||||  ||||
seq2  ACTTA-GGATATCATGGCACAGTGA-CATTATTATAGTTTATAG--TTCA  1045

seq1  C-AGCTAATTAAGA-GTATTGACTAC-TTCCCTCCCTTGGCAGATTGTCT  1096
      | |||| ||||||| ||| ||||||| |||| ||| ||||||||||||||
seq2  CAAGCT-ATTAAGAGGTAATGACTACTTTCCTTCCTTTGGCAGATTGTCT  1094

seq1  -AGTATATTATG-CTATTATGAGAGCTAATCCTCAAAGAGAAATCTTTCA  1144
       || |||| ||| |||||  |||||||||| ||| |||||||||||||||
seq2  AAGAATATAATGCCTATTTGGAGAGCTAAT-CTC-AAGAGAAATCTTTCA  1142

seq1  GGTCAGATCCAATTTGAATTCT  1166
      | |||||| |||||  ||||||
seq2  GTTCAGATTCAATTGAAATTCT  1164


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